Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12045

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,628,432	+				-1.6
2,628,432	+				-0.0
2,628,432	+				-0.0
2,628,432	+				-0.8
2,628,433	-				+0.3
2,628,433	-				-0.3
2,628,433	-				+1.1
2,628,433	-				-0.9
2,628,433	-				+0.7
2,628,531	-		HGI48_RS12040	0.15	-0.9
2,628,746	-		HGI48_RS12040	0.48	+0.5
2,628,926	+		HGI48_RS12040	0.76	+1.0
2,628,926	+		HGI48_RS12040	0.76	+2.5
2,628,927	-				-0.9
2,628,927	-		HGI48_RS12040	0.76	+0.7
2,628,927	-				-0.9
2,628,927	-				-0.9
2,628,927	-		HGI48_RS12040	0.76	-0.7
2,628,929	+		HGI48_RS12040	0.77	-0.6
2,628,930	-				+0.1
2,628,990	-		HGI48_RS12040	0.86	-1.5
2,629,213	-				-0.3
2,629,230	+				+0.1
2,629,230	+				-0.6
2,629,230	+				+1.5
2,629,231	-				+1.5
2,629,231	-				+0.1
2,629,231	-				+0.7
2,629,232	+				-0.9
2,629,285	-				-0.6
2,629,303	+				-1.3
2,629,308	-				-0.2
2,629,318	-				+0.3
2,629,329	-				+0.7
2,629,411	-				+0.6
2,629,411	-				+0.6
2,629,411	-				-0.0
2,629,447	+				-2.5
2,629,447	+				+0.4
2,629,447	+				-1.2
2,629,447	+				-1.0
2,629,447	+				-2.5
2,629,447	+				+1.4
2,629,447	+				+0.1
2,629,447	+				-1.6
2,629,448	-				-1.6
2,629,448	-				-1.2
2,629,448	-				-0.9
2,629,448	-				+0.7
2,629,448	-				+0.4
2,629,448	-				+1.4
2,629,448	-				+0.7
2,629,459	+				+0.5
2,629,459	+				+0.9
2,629,459	+				-0.5
2,629,460	-				+0.0
2,629,469	+				-1.1
2,629,469	+				+1.0
2,629,469	+				+0.0
2,629,470	-				-0.6
2,629,470	-				-0.3
2,629,470	-				-0.6
2,629,470	-				+0.2
2,629,470	-				+0.9
2,629,470	-				-0.6
2,629,473	+				-2.6
2,629,473	+				-1.3
2,629,473	+				-0.5
2,629,473	+				+2.5
2,629,473	+				+0.1
2,629,473	+				-0.0
2,629,473	+				+0.6
2,629,473	+				-1.3
2,629,473	+				-1.5
2,629,473	+				+0.1
2,629,473	+				+1.1
2,629,473	+				-0.9
2,629,473	+				-0.9
2,629,473	+				+0.2
2,629,473	+				+2.3
2,629,473	+				-0.1
2,629,474	-				-2.1
2,629,474	-				-0.6
2,629,474	-				-0.3
2,629,474	-				+0.3
2,629,474	-				-0.6
2,629,474	-				-1.9
2,629,474	-				-1.2
2,629,474	-				-0.1
2,629,474	-				-1.7
2,629,478	-				-1.5
2,629,478	-				-0.0
2,629,478	-				+0.7
2,629,582	+		HGI48_RS12045	0.15	-0.3
2,629,582	+		HGI48_RS12045	0.15	-0.3
2,629,637	+		HGI48_RS12045	0.19	-0.7
2,629,642	-				+1.7
2,629,642	-		HGI48_RS12045	0.20	-0.7
2,629,642	-		HGI48_RS12045	0.20	+0.4
2,629,642	-		HGI48_RS12045	0.20	+0.4
2,629,648	+		HGI48_RS12045	0.20	+0.9
2,629,660	-		HGI48_RS12045	0.21	-2.1
2,629,660	-		HGI48_RS12045	0.21	-0.6
2,629,756	+		HGI48_RS12045	0.29	-0.2
2,629,756	+		HGI48_RS12045	0.29	-0.6
2,629,757	-		HGI48_RS12045	0.29	-0.8
2,629,794	-		HGI48_RS12045	0.32	-0.1
2,629,794	-		HGI48_RS12045	0.32	-0.9
2,629,801	+		HGI48_RS12045	0.32	-0.6
2,629,801	+				+0.1
2,629,802	-		HGI48_RS12045	0.32	+0.5
2,629,802	-		HGI48_RS12045	0.32	-0.9
2,629,827	+				-0.9
2,629,844	+		HGI48_RS12045	0.36	-0.6
2,629,924	+		HGI48_RS12045	0.42	+0.3
2,629,958	+		HGI48_RS12045	0.45	+0.3
2,630,005	+		HGI48_RS12045	0.48	+0.5
2,630,006	-		HGI48_RS12045	0.49	+0.4
2,630,042	+		HGI48_RS12045	0.51	-0.5
2,630,042	+		HGI48_RS12045	0.51	+0.0
2,630,042	+		HGI48_RS12045	0.51	+0.2
2,630,042	+		HGI48_RS12045	0.51	-2.1
2,630,042	+				+1.1
2,630,043	-				+1.7
2,630,045	-				+0.7
2,630,056	+		HGI48_RS12045	0.52	-1.4
2,630,056	+		HGI48_RS12045	0.52	+0.3
2,630,057	-		HGI48_RS12045	0.53	-1.6
2,630,122	+		HGI48_RS12045	0.58	+0.3
2,630,172	+		HGI48_RS12045	0.62	-1.3
2,630,172	+		HGI48_RS12045	0.62	-1.3
2,630,181	+		HGI48_RS12045	0.62	+0.3
2,630,181	+		HGI48_RS12045	0.62	+2.6
2,630,200	-		HGI48_RS12045	0.64	+1.1
2,630,215	-		HGI48_RS12045	0.65	+0.9
2,630,235	+		HGI48_RS12045	0.67	+0.3
2,630,236	-		HGI48_RS12045	0.67	+6.0
2,630,257	+		HGI48_RS12045	0.68	+1.0
2,630,258	-		HGI48_RS12045	0.68	-0.0
2,630,528	-		HGI48_RS12045	0.90	-0.0
2,630,567	+				+0.3
2,630,568	-				-0.6
2,630,568	-				-0.3
2,630,700	+				+0.5
2,630,706	+				-0.1
2,630,706	+				-0.5
2,630,707	-				-2.3
2,630,729	+				-0.1
2,630,745	-				+1.6
2,630,759	+				-1.1
2,630,759	+				-0.1
2,630,759	+				+0.2
2,630,759	+				-2.1
2,630,759	+				+1.0
2,630,759	+				+1.0
2,630,759	+				-0.1
2,630,759	+				-0.0
2,630,759	+				-0.9
2,630,760	-				-0.3
2,630,760	-				+0.1
2,630,760	-				-1.9
2,630,760	-				+0.3
2,630,760	-				-2.1
2,630,760	-				+0.3
2,630,760	-				+1.0
2,630,760	-				-1.8
2,630,760	-				+0.2
2,630,760	-				-0.9
2,630,761	+				-1.1
2,630,762	-				+0.0
2,630,762	-				+1.0
2,630,765	+				+0.8
2,630,766	-				+0.3
2,630,766	-				+1.4
2,630,863	-				+1.7
2,630,863	-				-1.6
2,630,878	+				+1.2
2,630,878	+				+1.4
2,630,879	-				-0.4
2,630,879	-				+0.1
2,630,905	-				-0.1
2,630,905	-				+0.3
2,631,033	-		HGI48_RS12050	0.14	+3.5
2,631,054	+		HGI48_RS12050	0.16	-1.2
2,631,055	-		HGI48_RS12050	0.16	-0.3
2,631,135	+				-0.9
2,631,148	+				+1.1
2,631,149	-		HGI48_RS12050	0.25	-0.9
2,631,149	-		HGI48_RS12050	0.25	-0.2
2,631,154	-		HGI48_RS12050	0.25	+1.0
2,631,211	+		HGI48_RS12050	0.30	+0.4
2,631,211	+		HGI48_RS12050	0.30	-0.6
2,631,211	+		HGI48_RS12050	0.30	-2.3
2,631,211	+		HGI48_RS12050	0.30	-0.9
2,631,211	+		HGI48_RS12050	0.30	+0.5
2,631,211	+		HGI48_RS12050	0.30	-1.9
2,631,211	+		HGI48_RS12050	0.30	+0.5
2,631,211	+		HGI48_RS12050	0.30	-0.3
2,631,211	+		HGI48_RS12050	0.30	-0.4
2,631,212	-		HGI48_RS12050	0.31	-0.3
2,631,212	-		HGI48_RS12050	0.31	+0.5
2,631,212	-		HGI48_RS12050	0.31	+1.1
2,631,212	-		HGI48_RS12050	0.31	-1.0
2,631,212	-		HGI48_RS12050	0.31	-0.6
2,631,212	-		HGI48_RS12050	0.31	+0.5
2,631,430	-		HGI48_RS12050	0.51	-0.9
2,631,537	+		HGI48_RS12050	0.61	-0.5