Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11000

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,384,613	+		HGI48_RS10995	0.45	+0.9
2,384,613	+		HGI48_RS10995	0.45	-1.5
2,384,613	+		HGI48_RS10995	0.45	-0.3
2,384,613	+		HGI48_RS10995	0.45	+1.5
2,385,142	+				+0.9
2,385,172	+				-0.0
2,385,172	+				-0.8
2,385,320	-				-0.1
2,385,324	+				-0.1
2,385,324	+				-1.3
2,385,373	+				+1.1
2,385,374	-				-0.9
2,385,374	-				+1.4
2,385,392	+				-1.7
2,385,393	-				+0.7
2,385,412	+				-0.0
2,385,412	+				+0.2
2,385,415	-				-0.9
2,385,415	-				+0.0
2,385,450	+				+0.9
2,385,451	-				-1.0
2,385,465	-				+0.7
2,385,465	-				-0.3
2,385,477	-				+0.5
2,385,581	-				-0.2
2,385,604	+				+0.1
2,385,689	+		HGI48_RS11000	0.17	+2.1
2,385,689	+		HGI48_RS11000	0.17	-0.5
2,385,776	+		HGI48_RS11000	0.25	+0.1
2,385,846	-		HGI48_RS11000	0.30	-0.3
2,385,846	-		HGI48_RS11000	0.30	+0.9
2,385,846	-		HGI48_RS11000	0.30	-0.1
2,385,878	+				+1.7
2,385,896	+				+2.7
2,385,896	+		HGI48_RS11000	0.35	+1.0
2,385,897	-		HGI48_RS11000	0.35	-0.7
2,385,897	-				+1.1
2,385,919	-		HGI48_RS11000	0.36	+0.9
2,385,931	+		HGI48_RS11000	0.37	-1.3
2,386,089	+		HGI48_RS11000	0.51	+1.1
2,386,090	-		HGI48_RS11000	0.51	-1.5
2,386,165	-		HGI48_RS11000	0.57	+0.1
2,386,165	-		HGI48_RS11000	0.57	+1.5
2,386,304	+		HGI48_RS11000	0.68	-0.0
2,386,304	+		HGI48_RS11000	0.68	+0.1
2,386,364	-		HGI48_RS11000	0.73	-1.6
2,386,389	+		HGI48_RS11000	0.75	-2.7
2,386,389	+				+0.7
2,386,512	+		HGI48_RS11000	0.86	+0.2
2,386,512	+		HGI48_RS11000	0.86	-2.3
2,386,513	-		HGI48_RS11000	0.86	+0.6
2,386,513	-		HGI48_RS11000	0.86	+0.1
2,386,566	+				-1.3
2,386,566	+				-0.3
2,386,636	-				+0.7
2,386,735	+				-1.2
2,386,736	-				-1.0
2,386,745	+				-0.3
2,386,772	+				+0.2
2,386,772	+				+0.1
2,386,773	-				+0.2
2,386,773	-				+0.7
2,386,809	+				+1.4
2,386,809	+				+0.7
2,386,810	-				+1.4
2,386,810	-				+2.2
2,386,820	-				+1.1
2,386,820	-				-0.5
2,386,820	-				+1.1
2,386,820	-				+1.2
2,386,820	-				-1.0
2,386,820	-				+0.2
2,386,824	+				-0.3
2,386,824	+				-0.7
2,386,825	-				+0.7
2,386,843	+				+0.3
2,386,843	+				-0.0
2,386,843	+				-0.3
2,386,843	+				-1.0
2,386,844	-				+0.9
2,386,844	-				-1.9
2,386,844	-				+0.8
2,386,854	-				+0.3
2,386,876	+				-1.5
2,386,876	+				-0.3
2,386,877	-				+0.1
2,386,912	+				-0.3
2,386,912	+				-0.9
2,386,913	-				+0.8
2,386,913	-				+0.7
2,386,913	-				-0.3
2,386,913	-				+0.7
2,386,919	+				+0.8
2,386,940	+				-1.7
2,386,940	+				+0.7
2,386,940	+				-0.6
2,386,941	-				+0.1
2,386,941	-				-0.9
2,386,941	-				+0.4
2,386,989	+				-0.8
2,386,990	-				+1.2
2,386,990	-				-0.9
2,386,990	-				-0.3
2,387,015	-				+0.2
2,387,028	+		HGI48_RS11005	0.10	-1.7
2,387,028	+		HGI48_RS11005	0.10	-0.1
2,387,029	-		HGI48_RS11005	0.10	+1.0
2,387,029	-		HGI48_RS11005	0.10	-0.1
2,387,029	-				+0.1
2,387,063	-		HGI48_RS11005	0.12	+0.2
2,387,063	-		HGI48_RS11005	0.12	+2.4
2,387,073	-		HGI48_RS11005	0.13	-1.7
2,387,171	+		HGI48_RS11005	0.19	-0.0
2,387,172	-		HGI48_RS11005	0.19	-1.3
2,387,175	+				+0.7
2,387,191	+		HGI48_RS11005	0.20	+0.2
2,387,193	+		HGI48_RS11005	0.20	-0.7
2,387,193	+		HGI48_RS11005	0.20	-0.3
2,387,193	+		HGI48_RS11005	0.20	-0.3
2,387,194	-		HGI48_RS11005	0.20	+1.2
2,387,194	-		HGI48_RS11005	0.20	-0.6
2,387,194	-		HGI48_RS11005	0.20	-1.3
2,387,197	+		HGI48_RS11005	0.20	-0.7
2,387,197	+		HGI48_RS11005	0.20	+0.7
2,387,198	-		HGI48_RS11005	0.20	-1.3
2,387,198	-		HGI48_RS11005	0.20	+0.9
2,387,215	+		HGI48_RS11005	0.21	-0.6
2,387,342	+		HGI48_RS11005	0.28	-0.9
2,387,410	+		HGI48_RS11005	0.32	+0.8
2,387,411	-		HGI48_RS11005	0.32	+0.4
2,387,457	+		HGI48_RS11005	0.35	-3.3
2,387,457	+		HGI48_RS11005	0.35	-1.7
2,387,457	+		HGI48_RS11005	0.35	+0.2
2,387,457	+		HGI48_RS11005	0.35	+0.5
2,387,458	-		HGI48_RS11005	0.35	+0.1
2,387,458	-		HGI48_RS11005	0.35	+0.5
2,387,458	-				+0.1
2,387,499	+		HGI48_RS11005	0.37	-0.3
2,387,499	+		HGI48_RS11005	0.37	+0.4
2,387,499	+		HGI48_RS11005	0.37	+0.5
2,387,499	+		HGI48_RS11005	0.37	+1.3
2,387,499	+		HGI48_RS11005	0.37	-1.3
2,387,500	-		HGI48_RS11005	0.37	+1.1
2,387,500	-				-0.9
2,387,500	-		HGI48_RS11005	0.37	-0.9
2,387,589	+		HGI48_RS11005	0.42	-1.3
2,387,589	+		HGI48_RS11005	0.42	-0.3
2,387,589	+				-0.3
2,387,590	-				+1.7
2,387,590	-		HGI48_RS11005	0.43	+1.7
2,387,590	-				+0.7
2,387,590	-		HGI48_RS11005	0.43	-0.9
2,387,590	-		HGI48_RS11005	0.43	+1.2
2,387,590	-				+0.1
2,387,590	-		HGI48_RS11005	0.43	-0.7
2,387,605	-				+0.7
2,387,612	+		HGI48_RS11005	0.44	+0.9
2,387,613	-		HGI48_RS11005	0.44	-1.0
2,387,613	-		HGI48_RS11005	0.44	-0.7
2,387,613	-		HGI48_RS11005	0.44	-0.0
2,387,653	-		HGI48_RS11005	0.46	-0.3
2,387,679	+		HGI48_RS11005	0.48	+1.4
2,387,679	+		HGI48_RS11005	0.48	-0.6
2,387,679	+		HGI48_RS11005	0.48	+0.2
2,387,679	+		HGI48_RS11005	0.48	-1.5
2,387,681	+		HGI48_RS11005	0.48	+0.4
2,387,681	+		HGI48_RS11005	0.48	+0.0
2,387,681	+		HGI48_RS11005	0.48	-1.5
2,387,681	+		HGI48_RS11005	0.48	+0.3
2,387,681	+		HGI48_RS11005	0.48	+0.7
2,387,682	-		HGI48_RS11005	0.48	-0.2
2,387,682	-		HGI48_RS11005	0.48	-1.3