Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10370

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,234,737	+		HGI48_RS10365	0.12	+1.3
2,234,737	+		HGI48_RS10365	0.12	+0.4
2,234,738	-		HGI48_RS10365	0.12	+1.3
2,234,738	-		HGI48_RS10365	0.12	-0.1
2,234,739	+		HGI48_RS10365	0.12	+0.2
2,234,739	+		HGI48_RS10365	0.12	+0.4
2,234,739	+		HGI48_RS10365	0.12	+0.7
2,234,740	-		HGI48_RS10365	0.12	+1.0
2,234,740	-		HGI48_RS10365	0.12	+0.9
2,234,740	-		HGI48_RS10365	0.12	-1.1
2,234,740	-		HGI48_RS10365	0.12	+0.4
2,234,743	+		HGI48_RS10365	0.12	+1.8
2,234,786	+		HGI48_RS10365	0.20	-0.4
2,234,786	+		HGI48_RS10365	0.20	-1.3
2,234,786	+		HGI48_RS10365	0.20	-2.6
2,234,817	+		HGI48_RS10365	0.25	-0.2
2,234,910	+		HGI48_RS10365	0.40	+0.7
2,234,910	+		HGI48_RS10365	0.40	+1.1
2,234,925	-		HGI48_RS10365	0.43	+0.5
2,234,991	-				+0.1
2,235,062	+				+0.1
2,235,062	+		HGI48_RS10365	0.66	-1.9
2,235,202	+		HGI48_RS10365	0.89	+0.1
2,235,202	+		HGI48_RS10365	0.89	-0.1
2,235,272	+				-0.6
2,235,273	-				+0.5
2,235,273	-				-0.5
2,235,276	+				+1.4
2,235,276	+				-0.0
2,235,276	+				-0.1
2,235,276	+				+0.9
2,235,276	+				-1.8
2,235,276	+				-0.5
2,235,276	+				-1.3
2,235,276	+				-0.0
2,235,277	-				+1.0
2,235,277	-				+0.7
2,235,277	-				-0.6
2,235,277	-				-2.1
2,235,277	-				+0.4
2,235,306	+				+1.4
2,235,307	-				+2.3
2,235,378	+				-1.9
2,235,383	+				+0.1
2,235,384	-				+0.3
2,235,537	+				+0.3
2,235,537	+				+0.5
2,235,537	+				-1.6
2,235,538	-				+0.5
2,235,538	-				-0.1
2,235,538	-				+0.4
2,235,543	+				-0.1
2,235,544	-				+0.4
2,235,544	-				-1.3
2,235,544	-				-1.6
2,235,546	+				-1.1
2,235,547	-				-2.4
2,235,609	+				-0.4
2,235,609	+				-0.1
2,235,834	+				+2.0
2,235,898	+				+0.7
2,235,899	-				+0.3
2,235,979	+				-0.9
2,235,979	+				-0.3
2,235,980	-				-1.3
2,236,076	+		HGI48_RS10370	0.13	-1.6
2,236,077	-		HGI48_RS10370	0.13	+0.4
2,236,077	-		HGI48_RS10370	0.13	-1.9
2,236,077	-		HGI48_RS10370	0.13	+1.1
2,236,089	-		HGI48_RS10370	0.14	-1.4
2,236,098	+		HGI48_RS10370	0.14	+0.7
2,236,170	+		HGI48_RS10370	0.17	+0.3
2,236,170	+		HGI48_RS10370	0.17	+0.0
2,236,171	-		HGI48_RS10370	0.17	+0.3
2,236,187	-		HGI48_RS10370	0.17	-0.9
2,236,353	+		HGI48_RS10370	0.23	+0.5
2,236,413	+		HGI48_RS10370	0.26	-0.9
2,236,414	-		HGI48_RS10370	0.26	-1.5
2,236,414	-		HGI48_RS10370	0.26	-0.5
2,236,434	-		HGI48_RS10370	0.26	-0.5
2,236,434	-		HGI48_RS10370	0.26	-1.6
2,236,438	-		HGI48_RS10370	0.27	+0.4
2,236,438	-		HGI48_RS10370	0.27	-0.9
2,236,549	-				+3.8
2,236,678	+		HGI48_RS10370	0.35	+1.0
2,236,678	+		HGI48_RS10370	0.35	+0.3
2,236,678	+		HGI48_RS10370	0.35	+0.0
2,236,679	-				+0.7
2,236,679	-		HGI48_RS10370	0.36	+1.0
2,236,679	-		HGI48_RS10370	0.36	-0.1
2,236,679	-				-0.9
2,236,680	+		HGI48_RS10370	0.36	-2.1
2,236,680	+		HGI48_RS10370	0.36	+0.0
2,236,680	+		HGI48_RS10370	0.36	+1.2
2,236,680	+		HGI48_RS10370	0.36	-1.1
2,236,684	+		HGI48_RS10370	0.36	+1.0
2,236,684	+		HGI48_RS10370	0.36	+1.8
2,236,685	-		HGI48_RS10370	0.36	+0.5
2,236,685	-		HGI48_RS10370	0.36	-0.3
2,236,685	-		HGI48_RS10370	0.36	-0.0
2,236,685	-		HGI48_RS10370	0.36	-1.6
2,236,746	+		HGI48_RS10370	0.38	-1.6
2,236,746	+		HGI48_RS10370	0.38	+0.4
2,236,746	+		HGI48_RS10370	0.38	-1.3
2,236,747	-		HGI48_RS10370	0.38	-0.5
2,236,747	-		HGI48_RS10370	0.38	-1.6
2,236,747	-		HGI48_RS10370	0.38	-1.6
2,236,875	-		HGI48_RS10370	0.43	-0.5
2,236,924	+		HGI48_RS10370	0.45	-2.3
2,236,924	+		HGI48_RS10370	0.45	-1.9
2,236,924	+		HGI48_RS10370	0.45	-0.0
2,236,924	+		HGI48_RS10370	0.45	+0.2
2,236,925	-		HGI48_RS10370	0.45	+0.4
2,236,925	-		HGI48_RS10370	0.45	-0.3
2,236,925	-		HGI48_RS10370	0.45	+0.8
2,236,925	-		HGI48_RS10370	0.45	+0.3
2,237,071	+		HGI48_RS10370	0.50	-0.5
2,237,071	+		HGI48_RS10370	0.50	+0.6
2,237,071	+				+0.7
2,237,071	+				-0.9
2,237,071	+				+0.7
2,237,072	-		HGI48_RS10370	0.50	-1.3
2,237,072	-		HGI48_RS10370	0.50	+0.7
2,237,072	-		HGI48_RS10370	0.50	+1.3
2,237,188	+		HGI48_RS10370	0.54	-0.7
2,237,230	+				+0.7
2,237,230	+		HGI48_RS10370	0.56	+0.6
2,237,230	+		HGI48_RS10370	0.56	-0.6
2,237,231	-		HGI48_RS10370	0.56	-0.9
2,237,231	-		HGI48_RS10370	0.56	-0.9
2,237,231	-				+1.1
2,237,231	-		HGI48_RS10370	0.56	-1.1
2,237,307	+		HGI48_RS10370	0.59	-1.1
2,237,307	+		HGI48_RS10370	0.59	+1.0
2,237,308	-		HGI48_RS10370	0.59	-0.0
2,237,308	-		HGI48_RS10370	0.59	+0.4
2,237,338	+		HGI48_RS10370	0.60	-1.9
2,237,391	+		HGI48_RS10370	0.62	+0.0
2,237,577	-		HGI48_RS10370	0.69	-0.3
2,237,646	+		HGI48_RS10370	0.71	-1.3
2,237,647	-		HGI48_RS10370	0.71	+0.1
2,237,689	+		HGI48_RS10370	0.73	-1.6
2,237,814	+		HGI48_RS10370	0.78	-1.2
2,237,826	-		HGI48_RS10370	0.78	+0.7
2,237,964	-		HGI48_RS10370	0.83	-0.0
2,238,022	+		HGI48_RS10370	0.85	-1.3
2,238,023	-		HGI48_RS10370	0.85	-1.6
2,238,112	+		HGI48_RS10370	0.89	+0.7
2,238,142	+		HGI48_RS10370	0.90	+0.7
2,238,142	+		HGI48_RS10370	0.90	-1.8
2,238,143	-		HGI48_RS10370	0.90	-0.1
2,238,192	+				-1.1
2,238,192	+				-1.3
2,238,192	+				-1.0
2,238,192	+				-0.9
2,238,192	+				+0.1
2,238,192	+				-0.9
2,238,193	-				-0.3
2,238,193	-				-2.3
2,238,193	-				+0.4
2,238,193	-				-1.9
2,238,282	-				+2.1
2,238,432	+				-0.3
2,238,432	+				+0.2
2,238,433	-				+0.4
2,238,433	-				+0.2
2,238,433	-				-0.2
2,238,433	-				-1.3
2,238,434	+				-0.7
2,238,440	+				+0.4
2,238,482	+				+0.7
2,238,483	-				-0.3
2,238,483	-				-1.6
2,238,483	-				-1.1
2,238,486	+				+0.4
2,238,486	+				-1.9
2,238,486	+				-0.9
2,238,489	+				+0.3
2,238,490	-				+0.2
2,238,490	-				+0.7
2,238,652	+				+0.3
2,238,793	-				+0.7
2,238,795	+				-0.5
2,238,795	+				+0.7
2,238,795	+				-0.5
2,238,795	+				+0.5
2,238,795	+				+0.2
2,238,795	+				-0.8
2,238,795	+				-1.6
2,238,796	-				-0.1
2,238,847	+				+0.7
2,238,848	-				+0.5
2,238,848	-				-1.6
2,238,885	-				-0.3
2,238,889	+				-0.9
2,238,894	+				-0.5
2,238,894	+				+0.1
2,238,894	+				+0.7
2,238,895	-				+0.1
2,238,923	+				-0.8
2,238,923	+				+0.3
2,238,924	-				+1.3
2,238,948	+				+2.7
2,238,949	-				-0.2
2,239,032	+		HGI48_RS10375	0.10	-0.6
2,239,059	+		HGI48_RS10375	0.14	-1.0
2,239,059	+		HGI48_RS10375	0.14	-1.6
2,239,062	+		HGI48_RS10375	0.15	+0.7
2,239,062	+		HGI48_RS10375	0.15	-1.6
2,239,063	-		HGI48_RS10375	0.15	-2.6
2,239,063	-		HGI48_RS10375	0.15	-2.3
2,239,063	-		HGI48_RS10375	0.15	+0.1
2,239,240	-		HGI48_RS10375	0.42	-0.6
2,239,240	-		HGI48_RS10375	0.42	-2.9
2,239,273	-		HGI48_RS10375	0.47	-1.1