Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08515

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,833,929	+				-1.5
1,833,930	-				-0.2
1,833,931	+				-0.2
1,833,931	+				+0.8
1,833,931	+				+1.0
1,833,985	+		HGI48_RS08510	0.13	-0.7
1,833,985	+		HGI48_RS08510	0.13	+0.2
1,833,986	-		HGI48_RS08510	0.13	+0.3
1,834,103	+				+3.5
1,834,103	+		HGI48_RS08510	0.26	-1.6
1,834,103	+		HGI48_RS08510	0.26	+2.2
1,834,103	+		HGI48_RS08510	0.26	+0.4
1,834,103	+		HGI48_RS08510	0.26	-0.5
1,834,104	-		HGI48_RS08510	0.26	+0.4
1,834,104	-		HGI48_RS08510	0.26	+1.0
1,834,104	-		HGI48_RS08510	0.26	+0.2
1,834,105	+		HGI48_RS08510	0.26	-0.6
1,834,105	+		HGI48_RS08510	0.26	-2.6
1,834,106	-		HGI48_RS08510	0.26	-1.8
1,834,106	-		HGI48_RS08510	0.26	-1.4
1,834,121	+		HGI48_RS08510	0.28	-0.2
1,834,122	-		HGI48_RS08510	0.28	+3.2
1,834,122	-		HGI48_RS08510	0.28	-0.1
1,834,134	-		HGI48_RS08510	0.30	+3.0
1,834,134	-		HGI48_RS08510	0.30	-0.5
1,834,134	-				-0.8
1,834,135	+		HGI48_RS08510	0.30	-0.5
1,834,135	+		HGI48_RS08510	0.30	+0.7
1,834,135	+		HGI48_RS08510	0.30	-1.2
1,834,135	+		HGI48_RS08510	0.30	-2.6
1,834,136	-		HGI48_RS08510	0.30	+1.0
1,834,136	-		HGI48_RS08510	0.30	+1.2
1,834,136	-		HGI48_RS08510	0.30	-0.6
1,834,136	-		HGI48_RS08510	0.30	-0.2
1,834,136	-		HGI48_RS08510	0.30	-0.5
1,834,172	+		HGI48_RS08510	0.34	+1.0
1,834,172	+		HGI48_RS08510	0.34	-0.4
1,834,173	-		HGI48_RS08510	0.34	+0.0
1,834,173	-		HGI48_RS08510	0.34	-0.1
1,834,173	-		HGI48_RS08510	0.34	-0.2
1,834,255	+		HGI48_RS08510	0.43	+0.3
1,834,255	+		HGI48_RS08510	0.43	-1.2
1,834,255	+				+1.8
1,834,266	+		HGI48_RS08510	0.44	-2.0
1,834,266	+		HGI48_RS08510	0.44	+0.2
1,834,266	+		HGI48_RS08510	0.44	+1.1
1,834,266	+		HGI48_RS08510	0.44	-0.5
1,834,266	+		HGI48_RS08510	0.44	-1.8
1,834,267	-		HGI48_RS08510	0.44	+2.6
1,834,267	-		HGI48_RS08510	0.44	+0.4
1,834,267	-		HGI48_RS08510	0.44	+0.2
1,834,352	+		HGI48_RS08510	0.53	-2.2
1,834,353	-		HGI48_RS08510	0.53	-0.6
1,834,399	+		HGI48_RS08510	0.58	+1.2
1,834,498	+		HGI48_RS08510	0.69	-0.5
1,834,499	-		HGI48_RS08510	0.69	+0.1
1,834,520	-		HGI48_RS08510	0.72	-1.6
1,834,535	+		HGI48_RS08510	0.73	-0.6
1,834,535	+		HGI48_RS08510	0.73	-2.5
1,834,535	+				+2.8
1,834,535	+		HGI48_RS08510	0.73	+0.4
1,834,535	+		HGI48_RS08510	0.73	+0.2
1,834,536	-		HGI48_RS08510	0.73	+0.8
1,834,536	-		HGI48_RS08510	0.73	-1.2
1,834,536	-		HGI48_RS08510	0.73	+0.6
1,834,582	+		HGI48_RS08510	0.78	-1.0
1,834,583	-		HGI48_RS08510	0.78	+0.8
1,834,583	-				+0.2
1,834,675	+		HGI48_RS08510	0.88	-0.2
1,834,675	+		HGI48_RS08510	0.88	-0.2
1,834,676	-		HGI48_RS08510	0.89	+1.2
1,834,676	-		HGI48_RS08510	0.89	-0.6
1,834,676	-		HGI48_RS08510	0.89	+0.0
1,834,676	-				+0.8
1,834,686	+		HGI48_RS08510	0.90	-1.6
1,834,686	+		HGI48_RS08510	0.90	-0.0
1,834,686	+		HGI48_RS08510	0.90	+0.3
1,834,687	-		HGI48_RS08510	0.90	+1.1
1,834,696	+				-0.6
1,834,696	+				-1.6
1,834,697	-				+1.0
1,834,697	-				+1.5
1,834,697	-				-2.9
1,834,699	+				-0.6
1,834,699	+				-1.4
1,834,699	+				-2.0
1,834,699	+				-1.6
1,834,700	-				+0.1
1,834,701	+				-0.5
1,834,701	+				-0.8
1,834,701	+				+1.8
1,834,702	-				+0.3
1,834,718	+				+0.1
1,834,748	-				+1.9
1,834,774	+				+0.2
1,834,774	+				+1.2
1,834,774	+				+1.8
1,834,775	-				-0.6
1,834,778	+				+0.8
1,834,778	+				+0.8
1,834,778	+				-1.2
1,834,778	+				-1.4
1,834,779	-				-0.7
1,834,779	-				+0.0
1,834,779	-				+1.0
1,834,833	+				+0.5
1,834,833	+				-0.0
1,834,833	+				+0.0
1,834,833	+				+1.3
1,834,834	-				-0.8
1,834,834	-				-0.5
1,834,834	-				-0.6
1,834,836	-				-2.0
1,834,864	+				-0.8
1,834,878	+				+1.0
1,834,878	+				-0.3
1,834,879	-				-0.6
1,834,910	+				-1.0
1,834,910	+				-1.2
1,834,910	+				+0.8
1,834,911	-				+1.2
1,834,966	-		HGI48_RS08515	0.17	-0.6
1,834,966	-		HGI48_RS08515	0.17	-0.0
1,834,966	-		HGI48_RS08515	0.17	-0.6
1,834,966	-		HGI48_RS08515	0.17	-1.2
1,834,966	-				-0.8
1,834,966	-		HGI48_RS08515	0.17	-0.2
1,834,966	-		HGI48_RS08515	0.17	-0.2
1,835,111	+		HGI48_RS08515	0.80	-0.8
1,835,212	+				-0.3
1,835,256	+		HGI48_RS08520	0.14	-0.7
1,835,256	+		HGI48_RS08520	0.14	-1.9
1,835,257	-		HGI48_RS08520	0.15	-0.7
1,835,257	-		HGI48_RS08520	0.15	-1.8
1,835,262	+		HGI48_RS08520	0.16	+0.3
1,835,262	+		HGI48_RS08520	0.16	+0.4
1,835,262	+				-0.8
1,835,267	+				-0.8
1,835,267	+		HGI48_RS08520	0.18	-1.0
1,835,267	+		HGI48_RS08520	0.18	-0.2
1,835,267	+		HGI48_RS08520	0.18	+1.0
1,835,267	+		HGI48_RS08520	0.18	-0.6
1,835,267	+		HGI48_RS08520	0.18	+0.9
1,835,267	+		HGI48_RS08520	0.18	-1.8
1,835,267	+		HGI48_RS08520	0.18	+0.5
1,835,267	+		HGI48_RS08520	0.18	-0.2
1,835,268	-		HGI48_RS08520	0.18	+1.4
1,835,268	-		HGI48_RS08520	0.18	+0.2
1,835,268	-		HGI48_RS08520	0.18	-1.8
1,835,268	-		HGI48_RS08520	0.18	+0.9
1,835,268	-		HGI48_RS08520	0.18	-0.2
1,835,268	-		HGI48_RS08520	0.18	+0.4
1,835,268	-		HGI48_RS08520	0.18	+2.1
1,835,268	-		HGI48_RS08520	0.18	-1.2
1,835,268	-				-0.2
1,835,271	+		HGI48_RS08520	0.19	-0.6
1,835,271	+		HGI48_RS08520	0.19	-0.0
1,835,271	+		HGI48_RS08520	0.19	-0.2
1,835,271	+		HGI48_RS08520	0.19	-1.2
1,835,271	+		HGI48_RS08520	0.19	-1.2
1,835,272	-		HGI48_RS08520	0.20	-1.6
1,835,272	-		HGI48_RS08520	0.20	-1.9
1,835,272	-		HGI48_RS08520	0.20	+0.4
1,835,272	-		HGI48_RS08520	0.20	+0.3
1,835,272	-		HGI48_RS08520	0.20	+0.4
1,835,272	-		HGI48_RS08520	0.20	-0.1
1,835,272	-		HGI48_RS08520	0.20	+0.8
1,835,299	+		HGI48_RS08520	0.28	-0.2
1,835,299	+		HGI48_RS08520	0.28	-0.7
1,835,299	+		HGI48_RS08520	0.28	+0.1
1,835,300	-		HGI48_RS08520	0.29	+0.3
1,835,300	-				+0.8
1,835,337	-		HGI48_RS08520	0.40	-1.5
1,835,359	-				+0.8
1,835,455	+		HGI48_RS08520	0.78	-1.0
1,835,467	+		HGI48_RS08520	0.82	+0.2
1,835,467	+		HGI48_RS08520	0.82	+0.5
1,835,468	-		HGI48_RS08520	0.82	-1.8
1,835,468	-		HGI48_RS08520	0.82	+6.0
1,835,468	-		HGI48_RS08520	0.82	-0.1
1,835,468	-		HGI48_RS08520	0.82	-0.6
1,835,490	-		HGI48_RS08520	0.89	-0.8
1,835,560	+		HGI48_RS08525	0.14	-3.0
1,835,560	+		HGI48_RS08525	0.14	+2.1
1,835,560	+		HGI48_RS08525	0.14	+0.0
1,835,611	-		HGI48_RS08525	0.32	+0.5
1,835,671	-		HGI48_RS08525	0.53	-0.2
1,835,792	+				-1.2
1,835,792	+				+0.3
1,835,792	+				-1.2
1,835,792	+				-0.3
1,835,792	+				-0.6
1,835,792	+				-0.8
1,835,792	+				+0.6
1,835,792	+				+0.4
1,835,792	+				-1.4
1,835,793	-				-0.5
1,835,793	-				-2.0
1,835,793	-				-0.4
1,835,805	-				-0.1
1,835,907	-				+0.0
1,835,907	-				-0.5
1,835,923	+				-0.1
1,835,923	+				+0.3
1,835,942	+				+0.2
1,835,949	+				-2.1
1,835,949	+				-0.8
1,835,949	+				-0.9
1,835,950	-				-1.6
1,835,950	-				+1.7
1,835,952	+				+0.4
1,835,956	+				+0.2
1,835,956	+				+0.2
1,835,956	+				+0.4
1,835,957	-				-0.2
1,835,957	-				+0.8
1,835,964	+				-0.7
1,835,964	+				+1.0
1,835,964	+				-0.7
1,835,964	+				-1.6
1,835,964	+				+0.8
1,835,965	-				+0.4
1,835,965	-				+0.8
1,835,965	-				-1.2
1,835,965	-				+1.0
1,835,965	-				-0.1
1,835,965	-				-0.2
1,835,968	+				-1.6
1,835,968	+				+0.4
1,835,968	+				+0.4
1,835,968	+				+2.5
1,835,968	+				+0.2
1,835,968	+				+0.4
1,835,968	+				-1.6
1,835,968	+				-1.4
1,835,968	+				-0.4
1,835,968	+				+1.0
1,835,968	+				-0.5
1,835,969	-				+0.1
1,835,969	-				+0.2
1,835,969	-				+0.8
1,835,969	-				+0.2
1,835,969	-				+0.5
1,835,969	-				+0.6
1,835,969	-				+0.3
1,835,971	+				+0.3
1,835,971	+				-1.8
1,835,971	+				+1.8
1,835,972	-				+0.0
1,835,972	-				+0.8
1,835,972	-				+0.3
1,836,012	+				-0.5
1,836,062	-				+1.3
1,836,084	-				+0.5
1,836,110	-				-0.3
1,836,119	+				+0.8
1,836,119	+				-2.1
1,836,120	-				-0.8