Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07905

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,689,047	+				-2.2
1,689,245	+		HGI48_RS07895	0.53	+0.3
1,689,245	+		HGI48_RS07895	0.53	-1.5
1,689,245	+		HGI48_RS07895	0.53	-0.6
1,689,245	+		HGI48_RS07895	0.53	-1.4
1,689,245	+		HGI48_RS07895	0.53	-0.5
1,689,246	-		HGI48_RS07895	0.53	-0.5
1,689,246	-		HGI48_RS07895	0.53	-1.2
1,689,246	-		HGI48_RS07895	0.53	+0.4
1,689,246	-		HGI48_RS07895	0.53	+0.2
1,689,322	-		HGI48_RS07895	0.78	-1.2
1,689,322	-		HGI48_RS07895	0.78	+0.1
1,689,327	+		HGI48_RS07895	0.80	-0.1
1,689,327	+		HGI48_RS07895	0.80	-1.8
1,689,327	+		HGI48_RS07895	0.80	-1.8
1,689,327	+		HGI48_RS07895	0.80	+0.3
1,689,328	-		HGI48_RS07895	0.80	+1.4
1,689,328	-		HGI48_RS07895	0.80	-1.8
1,689,328	-		HGI48_RS07895	0.80	+0.8
1,689,328	-		HGI48_RS07895	0.80	-0.2
1,689,328	-		HGI48_RS07895	0.80	-0.2
1,689,328	-				-0.2
1,689,329	+		HGI48_RS07895	0.80	-1.2
1,689,329	+		HGI48_RS07895	0.80	-0.3
1,689,329	+		HGI48_RS07895	0.80	+0.1
1,689,330	-		HGI48_RS07895	0.81	+0.6
1,689,502	+		HGI48_RS07900	0.28	+0.5
1,689,502	+		HGI48_RS07900	0.28	+0.4
1,689,502	+		HGI48_RS07900	0.28	-2.9
1,689,502	+		HGI48_RS07900	0.28	+0.2
1,689,503	-				-0.2
1,689,579	+				+0.8
1,689,579	+		HGI48_RS07900	0.46	-1.5
1,689,579	+		HGI48_RS07900	0.46	-1.3
1,689,579	+		HGI48_RS07900	0.46	+0.6
1,689,579	+		HGI48_RS07900	0.46	-0.6
1,689,579	+		HGI48_RS07900	0.46	-0.1
1,689,579	+		HGI48_RS07900	0.46	-0.0
1,689,579	+		HGI48_RS07900	0.46	-1.5
1,689,579	+		HGI48_RS07900	0.46	-2.5
1,689,580	-		HGI48_RS07900	0.46	-1.2
1,689,580	-		HGI48_RS07900	0.46	-1.2
1,689,580	-		HGI48_RS07900	0.46	+0.5
1,689,580	-		HGI48_RS07900	0.46	+0.7
1,689,580	-		HGI48_RS07900	0.46	-1.0
1,689,580	-		HGI48_RS07900	0.46	-0.8
1,689,580	-				+1.8
1,689,580	-		HGI48_RS07900	0.46	+0.5
1,689,580	-		HGI48_RS07900	0.46	-0.2
1,689,580	-		HGI48_RS07900	0.46	-0.3
1,689,603	+		HGI48_RS07900	0.52	+0.5
1,689,739	-		HGI48_RS07900	0.84	+1.0
1,689,739	-		HGI48_RS07900	0.84	-1.2
1,689,768	-				+0.8
1,689,780	+				-0.3
1,689,781	-				-0.4
1,689,795	-				+1.1
1,689,803	+				-0.0
1,689,804	-				+0.3
1,689,815	-				-0.8
1,689,815	-				-0.6
1,689,837	+				+1.4
1,689,837	+				+0.2
1,689,837	+				-0.3
1,689,837	+				-0.8
1,689,837	+				+0.2
1,689,837	+				+1.6
1,689,838	-				-0.6
1,689,838	-				+1.6
1,689,846	-				+0.4
1,689,849	+				+0.1
1,689,861	+				+0.2
1,689,875	-				+0.1
1,689,902	-				-1.5
1,689,903	+				-1.5
1,689,903	+				-0.3
1,689,904	-				+0.6
1,689,955	-				+0.4
1,689,988	-				+0.1
1,690,171	+		HGI48_RS07905	0.11	+1.3
1,690,270	+		HGI48_RS07905	0.19	+0.7
1,690,270	+		HGI48_RS07905	0.19	-0.7
1,690,270	+		HGI48_RS07905	0.19	+0.8
1,690,271	-		HGI48_RS07905	0.19	-1.2
1,690,271	-		HGI48_RS07905	0.19	-1.0
1,690,299	+		HGI48_RS07905	0.21	+0.4
1,690,299	+				+0.8
1,690,300	-		HGI48_RS07905	0.21	+0.1
1,690,307	-				+1.8
1,690,372	-		HGI48_RS07905	0.27	+0.4
1,690,372	-		HGI48_RS07905	0.27	-1.5
1,690,377	+		HGI48_RS07905	0.27	+0.5
1,690,378	-		HGI48_RS07905	0.27	+0.3
1,690,491	-		HGI48_RS07905	0.36	-0.5
1,690,517	-		HGI48_RS07905	0.38	-0.6
1,690,621	-		HGI48_RS07905	0.46	-0.0
1,690,762	+		HGI48_RS07905	0.56	-2.0
1,690,762	+		HGI48_RS07905	0.56	-0.0
1,690,762	+		HGI48_RS07905	0.56	+0.0
1,690,763	-		HGI48_RS07905	0.56	-0.0
1,690,896	+		HGI48_RS07905	0.67	-1.0
1,690,984	-		HGI48_RS07905	0.73	-1.6
1,690,984	-		HGI48_RS07905	0.73	+0.0
1,691,307	+				+0.2
1,691,307	+				-0.5
1,691,308	-				+0.0
1,691,325	+				-0.9
1,691,325	+				-1.6
1,691,326	-				-1.3
1,691,326	-				-0.8
1,691,336	+				+0.3
1,691,336	+				-1.5
1,691,346	+				+2.6
1,691,346	+				-0.3
1,691,347	-				+0.0
1,691,347	-				+0.7
1,691,347	-				-1.8
1,691,347	-				+0.6
1,691,405	-				-0.5
1,691,405	-				-0.2
1,691,448	+				-0.6
1,691,449	-				+0.8
1,691,455	+				-0.2
1,691,455	+				-0.1
1,691,456	-				-0.8
1,691,586	+		HGI48_RS07910	0.26	+1.8
1,691,586	+				+0.8
1,691,587	-		HGI48_RS07910	0.26	-0.2
1,691,600	+		HGI48_RS07910	0.27	+0.8
1,691,600	+		HGI48_RS07910	0.27	+2.0
1,691,600	+		HGI48_RS07910	0.27	+0.6
1,691,601	-		HGI48_RS07910	0.27	+2.1
1,691,601	-		HGI48_RS07910	0.27	-2.6
1,691,635	-		HGI48_RS07910	0.32	+0.0
1,691,635	-		HGI48_RS07910	0.32	+0.3
1,691,698	+		HGI48_RS07910	0.39	-0.2
1,691,698	+		HGI48_RS07910	0.39	-1.5
1,691,699	-		HGI48_RS07910	0.40	-2.2
1,691,699	-		HGI48_RS07910	0.40	-1.2
1,691,753	+		HGI48_RS07910	0.46	-1.1
1,691,753	+		HGI48_RS07910	0.46	+1.0
1,691,754	-		HGI48_RS07910	0.46	-0.5
1,691,765	+		HGI48_RS07910	0.48	+0.2
1,691,765	+		HGI48_RS07910	0.48	+0.1
1,691,766	-				-0.8
1,691,766	-		HGI48_RS07910	0.48	+1.9
1,691,766	-		HGI48_RS07910	0.48	-2.3
1,691,766	-		HGI48_RS07910	0.48	+0.6
1,691,766	-		HGI48_RS07910	0.48	+0.5
1,691,851	+		HGI48_RS07910	0.58	+0.2
1,691,851	+		HGI48_RS07910	0.58	+1.1
1,691,852	-				+0.8
1,691,865	+				-0.8
1,691,872	+		HGI48_RS07910	0.61	+0.8
1,691,872	+		HGI48_RS07910	0.61	-0.2
1,691,872	+		HGI48_RS07910	0.61	-0.3
1,691,872	+		HGI48_RS07910	0.61	+0.5
1,691,873	-		HGI48_RS07910	0.61	-0.3
1,691,950	-		HGI48_RS07910	0.71	-1.7
1,692,026	-		HGI48_RS07910	0.80	-0.2
1,692,026	-		HGI48_RS07910	0.80	-0.8
1,692,026	-		HGI48_RS07910	0.80	+1.0
1,692,026	-		HGI48_RS07910	0.80	+1.4
1,692,140	-				-1.8
1,692,140	-				-1.1
1,692,140	-				+1.2
1,692,140	-				+1.3
1,692,140	-				-0.5
1,692,207	+				-1.5
1,692,229	+				+0.4
1,692,230	-				+0.1
1,692,230	-				+0.0
1,692,230	-				+0.9
1,692,234	-				+1.3
1,692,240	-				-0.7
1,692,290	+				+2.0
1,692,290	+				+0.4
1,692,290	+				+0.1
1,692,290	+				+5.6
1,692,290	+				+0.1
1,692,290	+				+0.3
1,692,290	+				-1.2
1,692,291	-				+0.8
1,692,291	-				+0.4