Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03630 and HGI48_RS03635 are separated by 453 nucleotides HGI48_RS03635 and HGI48_RS03640 are separated by 141 nucleotides HGI48_RS03640 and HGI48_RS03645 are separated by 101 nucleotides
HGI48_RS03630: HGI48_RS03630 - MFS transporter, at 768,922 to 770,448
_RS03630
HGI48_RS03635: HGI48_RS03635 - helix-turn-helix transcriptional regulator, at 770,902 to 771,111
_RS03635
HGI48_RS03640: HGI48_RS03640 - fructuronate reductase, at 771,253 to 772,749
_RS03640
HGI48_RS03645: HGI48_RS03645 - DHA2 family efflux MFS transporter permease subunit, at 772,851 to 774,455
_RS03645
Position (kb) 771
772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 770.253 kb on - strand, within HGI48_RS03630 at 770.253 kb on - strand, within HGI48_RS03630 at 770.268 kb on + strand, within HGI48_RS03630 at 770.345 kb on + strand at 770.345 kb on + strand at 770.345 kb on + strand at 770.345 kb on + strand at 770.345 kb on + strand at 770.346 kb on - strand at 770.346 kb on - strand at 770.351 kb on + strand at 770.351 kb on + strand at 770.351 kb on + strand at 770.351 kb on + strand at 770.351 kb on + strand at 770.352 kb on - strand at 770.352 kb on - strand at 770.352 kb on - strand at 770.352 kb on - strand at 770.352 kb on - strand at 770.357 kb on - strand at 770.434 kb on - strand at 770.434 kb on - strand at 770.434 kb on - strand at 770.498 kb on + strand at 770.526 kb on + strand at 770.533 kb on - strand at 770.537 kb on + strand at 770.537 kb on + strand at 770.538 kb on - strand at 770.538 kb on - strand at 770.538 kb on - strand at 770.562 kb on + strand at 770.562 kb on + strand at 770.563 kb on - strand at 770.563 kb on - strand at 770.563 kb on - strand at 770.617 kb on + strand at 770.628 kb on - strand at 770.668 kb on - strand at 770.700 kb on + strand at 770.700 kb on + strand at 770.701 kb on - strand at 770.701 kb on - strand at 770.701 kb on - strand at 770.701 kb on - strand at 770.724 kb on + strand at 770.725 kb on - strand at 770.725 kb on - strand at 770.725 kb on - strand at 770.725 kb on - strand at 770.725 kb on - strand at 770.733 kb on + strand at 770.733 kb on + strand at 770.733 kb on + strand at 770.734 kb on - strand at 770.734 kb on - strand at 770.772 kb on + strand at 770.839 kb on + strand at 770.840 kb on - strand at 770.840 kb on - strand at 770.861 kb on + strand at 770.861 kb on + strand at 770.861 kb on + strand at 770.861 kb on + strand at 770.862 kb on - strand at 770.862 kb on - strand at 770.862 kb on - strand at 770.862 kb on - strand at 770.862 kb on - strand at 770.862 kb on - strand at 770.880 kb on + strand at 770.880 kb on + strand at 770.880 kb on + strand at 770.881 kb on - strand at 770.881 kb on - strand at 770.885 kb on + strand at 770.885 kb on + strand at 770.885 kb on + strand at 770.885 kb on + strand at 770.886 kb on - strand at 770.891 kb on + strand at 770.891 kb on + strand at 770.891 kb on + strand at 771.039 kb on + strand, within HGI48_RS03635 at 771.039 kb on + strand at 771.040 kb on - strand, within HGI48_RS03635 at 771.040 kb on - strand, within HGI48_RS03635 at 771.040 kb on - strand, within HGI48_RS03635 at 771.053 kb on + strand, within HGI48_RS03635 at 771.053 kb on + strand, within HGI48_RS03635 at 771.053 kb on + strand, within HGI48_RS03635 at 771.053 kb on + strand, within HGI48_RS03635 at 771.054 kb on - strand, within HGI48_RS03635 at 771.054 kb on - strand, within HGI48_RS03635 at 771.054 kb on - strand, within HGI48_RS03635 at 771.054 kb on - strand, within HGI48_RS03635 at 771.094 kb on + strand at 771.094 kb on + strand at 771.094 kb on + strand at 771.094 kb on + strand at 771.095 kb on - strand at 771.311 kb on + strand at 771.311 kb on + strand at 771.312 kb on - strand at 771.312 kb on - strand at 771.501 kb on - strand, within HGI48_RS03640 at 771.501 kb on - strand, within HGI48_RS03640 at 771.501 kb on - strand, within HGI48_RS03640 at 771.664 kb on + strand, within HGI48_RS03640 at 771.664 kb on + strand, within HGI48_RS03640 at 771.665 kb on - strand, within HGI48_RS03640 at 771.665 kb on - strand at 771.677 kb on + strand, within HGI48_RS03640 at 771.677 kb on + strand, within HGI48_RS03640 at 771.678 kb on - strand, within HGI48_RS03640 at 771.700 kb on + strand, within HGI48_RS03640 at 771.700 kb on + strand, within HGI48_RS03640 at 771.701 kb on - strand, within HGI48_RS03640 at 771.756 kb on - strand, within HGI48_RS03640 at 771.772 kb on - strand, within HGI48_RS03640 at 771.772 kb on - strand, within HGI48_RS03640 at 771.772 kb on - strand, within HGI48_RS03640 at 771.772 kb on - strand at 771.783 kb on + strand, within HGI48_RS03640 at 771.783 kb on + strand at 771.784 kb on - strand, within HGI48_RS03640 at 771.784 kb on - strand, within HGI48_RS03640 at 771.803 kb on + strand, within HGI48_RS03640 at 771.812 kb on + strand, within HGI48_RS03640 at 771.813 kb on - strand, within HGI48_RS03640 at 771.813 kb on - strand, within HGI48_RS03640 at 771.930 kb on + strand, within HGI48_RS03640 at 771.930 kb on + strand, within HGI48_RS03640 at 771.930 kb on + strand, within HGI48_RS03640 at 772.279 kb on + strand, within HGI48_RS03640 at 772.280 kb on - strand, within HGI48_RS03640 at 772.280 kb on - strand, within HGI48_RS03640 at 772.280 kb on - strand, within HGI48_RS03640 at 772.329 kb on - strand, within HGI48_RS03640 at 772.540 kb on + strand, within HGI48_RS03640 at 772.540 kb on + strand, within HGI48_RS03640 at 772.541 kb on - strand, within HGI48_RS03640 at 772.639 kb on + strand at 772.639 kb on + strand at 772.639 kb on + strand at 772.639 kb on + strand at 772.639 kb on + strand at 772.639 kb on + strand at 772.639 kb on + strand at 772.639 kb on + strand at 772.640 kb on - strand at 772.640 kb on - strand at 772.640 kb on - strand at 772.640 kb on - strand at 772.749 kb on + strand at 772.749 kb on + strand at 772.750 kb on - strand at 772.822 kb on - strand at 773.017 kb on + strand, within HGI48_RS03645 at 773.017 kb on + strand, within HGI48_RS03645 at 773.018 kb on - strand, within HGI48_RS03645 at 773.018 kb on - strand, within HGI48_RS03645 at 773.481 kb on + strand, within HGI48_RS03645 at 773.482 kb on - strand, within HGI48_RS03645 at 773.482 kb on - strand, within HGI48_RS03645 at 773.482 kb on - strand, within HGI48_RS03645 at 773.539 kb on + strand, within HGI48_RS03645 at 773.573 kb on + strand at 773.573 kb on + strand, within HGI48_RS03645 at 773.573 kb on + strand, within HGI48_RS03645 at 773.573 kb on + strand, within HGI48_RS03645 at 773.574 kb on - strand, within HGI48_RS03645 at 773.574 kb on - strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.575 kb on + strand, within HGI48_RS03645 at 773.576 kb on - strand, within HGI48_RS03645 at 773.576 kb on - strand, within HGI48_RS03645 at 773.576 kb on - strand, within HGI48_RS03645 at 773.576 kb on - strand, within HGI48_RS03645 at 773.576 kb on - strand, within HGI48_RS03645 at 773.576 kb on - strand, within HGI48_RS03645 at 773.576 kb on - strand, within HGI48_RS03645 at 773.576 kb on - strand, within HGI48_RS03645 at 773.576 kb on - strand, within HGI48_RS03645 at 773.576 kb on - strand, within HGI48_RS03645 at 773.587 kb on + strand, within HGI48_RS03645 at 773.587 kb on + strand, within HGI48_RS03645 at 773.587 kb on + strand, within HGI48_RS03645 at 773.588 kb on - strand, within HGI48_RS03645 at 773.588 kb on - strand, within HGI48_RS03645 at 773.588 kb on - strand, within HGI48_RS03645 at 773.588 kb on - strand, within HGI48_RS03645
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 770,253 - HGI48_RS03630 0.87 +0.8 770,253 - HGI48_RS03630 0.87 -1.5 770,268 + HGI48_RS03630 0.88 -0.3 770,345 + -0.2 770,345 + -1.5 770,345 + -0.2 770,345 + +1.1 770,345 + +0.2 770,346 - +0.2 770,346 - +1.3 770,351 + -3.0 770,351 + +1.5 770,351 + +0.1 770,351 + +2.1 770,351 + +1.4 770,352 - -0.1 770,352 - +0.6 770,352 - +0.5 770,352 - -0.2 770,352 - +0.2 770,357 - -1.5 770,434 - +0.4 770,434 - +0.4 770,434 - -0.3 770,498 + -0.9 770,526 + -1.6 770,533 - -0.5 770,537 + -0.1 770,537 + -0.9 770,538 - +0.3 770,538 - +0.8 770,538 - +0.4 770,562 + -0.5 770,562 + +2.0 770,563 - +1.1 770,563 - +1.6 770,563 - +0.2 770,617 + +0.7 770,628 - +0.5 770,668 - -0.3 770,700 + +1.1 770,700 + -1.0 770,701 - -1.5 770,701 - +0.9 770,701 - +2.1 770,701 - -0.6 770,724 + -0.2 770,725 - +1.7 770,725 - +1.1 770,725 - +0.6 770,725 - +0.9 770,725 - +0.6 770,733 + +0.5 770,733 + -0.8 770,733 + -0.6 770,734 - +2.2 770,734 - +0.4 770,772 + -0.2 770,839 + +0.5 770,840 - +0.1 770,840 - -0.5 770,861 + +0.5 770,861 + -0.2 770,861 + +0.2 770,861 + +0.1 770,862 - -0.3 770,862 - -0.1 770,862 - +0.7 770,862 - -2.1 770,862 - -0.2 770,862 - -2.1 770,880 + -1.7 770,880 + +0.1 770,880 + +0.7 770,881 - -0.3 770,881 - -1.2 770,885 + -0.7 770,885 + +3.5 770,885 + -1.1 770,885 + -0.5 770,886 - -0.5 770,891 + +1.1 770,891 + -1.5 770,891 + +1.5 771,039 + HGI48_RS03635 0.65 +1.6 771,039 + +1.1 771,040 - HGI48_RS03635 0.66 -1.1 771,040 - HGI48_RS03635 0.66 +0.6 771,040 - HGI48_RS03635 0.66 -1.7 771,053 + HGI48_RS03635 0.72 -1.2 771,053 + HGI48_RS03635 0.72 +0.2 771,053 + HGI48_RS03635 0.72 -1.8 771,053 + HGI48_RS03635 0.72 -1.6 771,054 - HGI48_RS03635 0.72 -0.2 771,054 - HGI48_RS03635 0.72 -0.3 771,054 - HGI48_RS03635 0.72 +0.7 771,054 - HGI48_RS03635 0.72 -2.2 771,094 + -0.5 771,094 + +0.2 771,094 + +1.5 771,094 + -0.9 771,095 - -0.6 771,311 + +1.1 771,311 + +0.3 771,312 - -0.3 771,312 - +0.9 771,501 - HGI48_RS03640 0.17 +1.5 771,501 - HGI48_RS03640 0.17 +0.8 771,501 - HGI48_RS03640 0.17 +2.1 771,664 + HGI48_RS03640 0.27 -0.6 771,664 + HGI48_RS03640 0.27 -1.5 771,665 - HGI48_RS03640 0.28 -0.2 771,665 - +0.5 771,677 + HGI48_RS03640 0.28 -0.5 771,677 + HGI48_RS03640 0.28 +1.4 771,678 - HGI48_RS03640 0.28 +1.4 771,700 + HGI48_RS03640 0.30 -0.7 771,700 + HGI48_RS03640 0.30 -0.2 771,701 - HGI48_RS03640 0.30 -0.4 771,756 - HGI48_RS03640 0.34 -0.4 771,772 - HGI48_RS03640 0.35 -1.2 771,772 - HGI48_RS03640 0.35 -0.2 771,772 - HGI48_RS03640 0.35 -0.9 771,772 - +1.1 771,783 + HGI48_RS03640 0.35 -0.4 771,783 + +1.1 771,784 - HGI48_RS03640 0.35 -2.1 771,784 - HGI48_RS03640 0.35 +0.1 771,803 + HGI48_RS03640 0.37 +0.2 771,812 + HGI48_RS03640 0.37 -1.5 771,813 - HGI48_RS03640 0.37 -0.2 771,813 - HGI48_RS03640 0.37 -0.1 771,930 + HGI48_RS03640 0.45 +0.9 771,930 + HGI48_RS03640 0.45 -1.2 771,930 + HGI48_RS03640 0.45 +0.2 772,279 + HGI48_RS03640 0.69 +0.8 772,280 - HGI48_RS03640 0.69 +1.4 772,280 - HGI48_RS03640 0.69 +0.4 772,280 - HGI48_RS03640 0.69 +0.4 772,329 - HGI48_RS03640 0.72 -0.9 772,540 + HGI48_RS03640 0.86 +0.9 772,540 + HGI48_RS03640 0.86 +1.8 772,541 - HGI48_RS03640 0.86 -1.2 772,639 + +0.1 772,639 + -0.5 772,639 + +1.3 772,639 + +1.0 772,639 + -0.3 772,639 + +0.8 772,639 + -1.2 772,639 + +0.4 772,640 - -0.5 772,640 - -0.1 772,640 - -0.9 772,640 - +2.1 772,749 + +0.0 772,749 + -1.1 772,750 - -1.1 772,822 - -1.2 773,017 + HGI48_RS03645 0.10 -0.2 773,017 + HGI48_RS03645 0.10 +0.5 773,018 - HGI48_RS03645 0.10 -1.0 773,018 - HGI48_RS03645 0.10 +0.1 773,481 + HGI48_RS03645 0.39 +0.6 773,482 - HGI48_RS03645 0.39 +0.8 773,482 - HGI48_RS03645 0.39 -0.2 773,482 - HGI48_RS03645 0.39 -0.0 773,539 + HGI48_RS03645 0.43 -1.2 773,573 + -0.5 773,573 + HGI48_RS03645 0.45 +0.3 773,573 + HGI48_RS03645 0.45 -0.9 773,573 + HGI48_RS03645 0.45 -1.9 773,574 - HGI48_RS03645 0.45 -0.0 773,574 - HGI48_RS03645 0.45 +0.1 773,575 + HGI48_RS03645 0.45 -0.7 773,575 + HGI48_RS03645 0.45 +0.1 773,575 + HGI48_RS03645 0.45 -2.1 773,575 + HGI48_RS03645 0.45 -0.5 773,575 + HGI48_RS03645 0.45 +1.4 773,575 + HGI48_RS03645 0.45 +1.1 773,575 + HGI48_RS03645 0.45 -0.9 773,575 + HGI48_RS03645 0.45 -0.9 773,575 + HGI48_RS03645 0.45 -0.5 773,575 + HGI48_RS03645 0.45 +0.3 773,575 + HGI48_RS03645 0.45 +0.8 773,575 + HGI48_RS03645 0.45 +0.2 773,575 + HGI48_RS03645 0.45 -0.9 773,575 + HGI48_RS03645 0.45 -0.6 773,576 - HGI48_RS03645 0.45 -0.7 773,576 - HGI48_RS03645 0.45 +0.3 773,576 - HGI48_RS03645 0.45 -1.0 773,576 - HGI48_RS03645 0.45 +0.1 773,576 - HGI48_RS03645 0.45 +1.7 773,576 - HGI48_RS03645 0.45 +0.6 773,576 - HGI48_RS03645 0.45 -0.2 773,576 - HGI48_RS03645 0.45 -0.9 773,576 - HGI48_RS03645 0.45 -0.7 773,576 - HGI48_RS03645 0.45 +0.8 773,587 + HGI48_RS03645 0.46 +0.5 773,587 + HGI48_RS03645 0.46 -0.1 773,587 + HGI48_RS03645 0.46 -0.6 773,588 - HGI48_RS03645 0.46 +0.4 773,588 - HGI48_RS03645 0.46 +0.2 773,588 - HGI48_RS03645 0.46 -2.7 773,588 - HGI48_RS03645 0.46 +0.2
Or see this region's nucleotide sequence