Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03300 and HGI48_RS03305 overlap by 14 nucleotides HGI48_RS03305 and HGI48_RS03310 are separated by 283 nucleotides HGI48_RS03310 and HGI48_RS03315 are separated by 62 nucleotides
HGI48_RS03300: HGI48_RS03300 - N-acetyltransferase, at 697,099 to 697,602
_RS03300
HGI48_RS03305: HGI48_RS03305 - GIY-YIG nuclease family protein, at 697,589 to 697,891
_RS03305
HGI48_RS03310: HGI48_RS03310 - deoxyribose-phosphate aldolase, at 698,175 to 698,954
_RS03310
HGI48_RS03315: HGI48_RS03315 - thymidine phosphorylase, at 699,017 to 700,348
_RS03315
Position (kb) 698
699 Strain fitness (log2 ratio) -2
-1
0
1
2 at 697.259 kb on + strand, within HGI48_RS03300 at 697.259 kb on + strand, within HGI48_RS03300 at 697.259 kb on + strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.265 kb on - strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.379 kb on - strand, within HGI48_RS03300 at 697.379 kb on - strand at 697.444 kb on + strand, within HGI48_RS03300 at 697.444 kb on + strand, within HGI48_RS03300 at 697.445 kb on - strand, within HGI48_RS03300 at 697.445 kb on - strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.448 kb on - strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.528 kb on + strand, within HGI48_RS03300 at 697.577 kb on - strand at 697.622 kb on - strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand at 697.830 kb on + strand at 697.830 kb on + strand, within HGI48_RS03305 at 697.830 kb on + strand, within HGI48_RS03305 at 697.831 kb on - strand, within HGI48_RS03305 at 697.831 kb on - strand, within HGI48_RS03305 at 697.860 kb on + strand, within HGI48_RS03305 at 697.860 kb on + strand, within HGI48_RS03305 at 697.861 kb on - strand at 697.871 kb on + strand at 697.921 kb on + strand at 697.926 kb on + strand at 697.926 kb on + strand at 697.935 kb on - strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.954 kb on - strand at 697.954 kb on - strand at 697.981 kb on + strand at 697.981 kb on + strand at 697.982 kb on - strand at 698.000 kb on + strand at 698.001 kb on - strand at 698.001 kb on - strand at 698.001 kb on - strand at 698.039 kb on - strand at 698.058 kb on + strand at 698.059 kb on - strand at 698.059 kb on - strand at 698.066 kb on + strand at 698.080 kb on + strand at 698.108 kb on + strand at 698.109 kb on - strand at 698.109 kb on - strand at 698.109 kb on - strand at 698.124 kb on + strand at 698.125 kb on - strand at 698.130 kb on + strand at 698.130 kb on + strand at 698.131 kb on - strand at 698.174 kb on + strand at 698.175 kb on - strand at 698.175 kb on - strand at 698.175 kb on - strand at 698.186 kb on - strand at 698.225 kb on - strand at 698.225 kb on - strand at 698.283 kb on - strand, within HGI48_RS03310 at 698.315 kb on + strand, within HGI48_RS03310 at 698.315 kb on + strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.576 kb on - strand, within HGI48_RS03310 at 698.775 kb on - strand, within HGI48_RS03310 at 698.792 kb on - strand at 698.817 kb on + strand, within HGI48_RS03310 at 698.818 kb on - strand, within HGI48_RS03310 at 698.838 kb on - strand, within HGI48_RS03310 at 698.838 kb on - strand, within HGI48_RS03310 at 698.993 kb on - strand at 698.999 kb on + strand at 698.999 kb on + strand at 698.999 kb on + strand at 698.999 kb on + strand at 699.000 kb on - strand at 699.166 kb on + strand, within HGI48_RS03315 at 699.166 kb on + strand, within HGI48_RS03315 at 699.167 kb on - strand, within HGI48_RS03315 at 699.338 kb on + strand, within HGI48_RS03315 at 699.339 kb on - strand, within HGI48_RS03315 at 699.339 kb on - strand, within HGI48_RS03315 at 699.452 kb on - strand, within HGI48_RS03315 at 699.518 kb on + strand, within HGI48_RS03315 at 699.656 kb on + strand, within HGI48_RS03315 at 699.656 kb on + strand, within HGI48_RS03315 at 699.656 kb on + strand, within HGI48_RS03315 at 699.656 kb on + strand, within HGI48_RS03315 at 699.657 kb on - strand, within HGI48_RS03315 at 699.657 kb on - strand, within HGI48_RS03315 at 699.657 kb on - strand, within HGI48_RS03315 at 699.657 kb on - strand, within HGI48_RS03315 at 699.783 kb on + strand at 699.951 kb on + strand, within HGI48_RS03315 at 699.951 kb on + strand, within HGI48_RS03315 at 699.951 kb on + strand, within HGI48_RS03315
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 697,259 + HGI48_RS03300 0.32 +0.2 697,259 + HGI48_RS03300 0.32 +0.8 697,259 + HGI48_RS03300 0.32 +2.0 697,260 - HGI48_RS03300 0.32 -0.1 697,260 - HGI48_RS03300 0.32 +1.5 697,260 - HGI48_RS03300 0.32 -0.5 697,260 - HGI48_RS03300 0.32 +0.9 697,265 - HGI48_RS03300 0.33 +1.0 697,378 + HGI48_RS03300 0.55 -0.3 697,378 + HGI48_RS03300 0.55 +0.8 697,378 + HGI48_RS03300 0.55 +0.5 697,379 - HGI48_RS03300 0.56 -2.1 697,379 - -0.5 697,444 + HGI48_RS03300 0.68 +1.8 697,444 + HGI48_RS03300 0.68 +1.1 697,445 - HGI48_RS03300 0.69 +0.3 697,445 - HGI48_RS03300 0.69 +2.0 697,447 + HGI48_RS03300 0.69 +1.3 697,447 + HGI48_RS03300 0.69 +0.7 697,447 + HGI48_RS03300 0.69 -0.2 697,448 - HGI48_RS03300 0.69 -0.5 697,489 + HGI48_RS03300 0.77 +1.8 697,489 + HGI48_RS03300 0.77 +0.3 697,489 + HGI48_RS03300 0.77 -0.2 697,489 + HGI48_RS03300 0.77 -0.2 697,490 - HGI48_RS03300 0.78 +0.4 697,490 - HGI48_RS03300 0.78 -1.1 697,490 - HGI48_RS03300 0.78 +1.3 697,528 + HGI48_RS03300 0.85 +0.7 697,577 - +1.3 697,622 - HGI48_RS03305 0.11 +0.5 697,731 + HGI48_RS03305 0.47 +0.5 697,731 + HGI48_RS03305 0.47 +1.9 697,731 + HGI48_RS03305 0.47 -1.5 697,731 + HGI48_RS03305 0.47 -1.5 697,731 + HGI48_RS03305 0.47 -0.7 697,731 + +0.5 697,732 - HGI48_RS03305 0.47 +1.1 697,732 - HGI48_RS03305 0.47 +0.1 697,732 - HGI48_RS03305 0.47 -0.2 697,732 - +1.5 697,830 + +2.1 697,830 + HGI48_RS03305 0.80 -2.1 697,830 + HGI48_RS03305 0.80 -0.6 697,831 - HGI48_RS03305 0.80 +0.4 697,831 - HGI48_RS03305 0.80 +0.8 697,860 + HGI48_RS03305 0.89 -1.7 697,860 + HGI48_RS03305 0.89 -0.9 697,861 - +1.5 697,871 + -0.7 697,921 + -1.4 697,926 + -0.5 697,926 + -0.6 697,935 - -0.9 697,948 + -1.9 697,948 + -0.2 697,948 + +0.5 697,948 + -1.4 697,948 + +0.8 697,949 - +0.3 697,949 - -0.5 697,949 - -2.1 697,949 - -0.2 697,954 - +0.4 697,954 - -1.9 697,981 + -0.4 697,981 + -0.5 697,982 - +0.5 698,000 + +0.0 698,001 - -0.1 698,001 - -0.2 698,001 - -0.7 698,039 - -1.1 698,058 + -2.1 698,059 - -1.5 698,059 - -1.1 698,066 + -0.6 698,080 + -0.0 698,108 + +0.5 698,109 - +0.7 698,109 - -1.1 698,109 - +1.5 698,124 + +0.8 698,125 - -0.5 698,130 + -1.7 698,130 + -1.7 698,131 - -0.2 698,174 + -0.7 698,175 - +0.3 698,175 - -0.5 698,175 - -1.5 698,186 - +1.3 698,225 - +1.1 698,225 - +0.9 698,283 - HGI48_RS03310 0.14 -0.2 698,315 + HGI48_RS03310 0.18 +0.0 698,315 + HGI48_RS03310 0.18 -0.2 698,316 - HGI48_RS03310 0.18 +0.3 698,316 - HGI48_RS03310 0.18 +0.1 698,316 - HGI48_RS03310 0.18 -0.7 698,316 - HGI48_RS03310 0.18 -0.2 698,319 + HGI48_RS03310 0.18 +0.7 698,319 + HGI48_RS03310 0.18 -0.4 698,319 + HGI48_RS03310 0.18 +1.1 698,576 - HGI48_RS03310 0.51 -0.2 698,775 - HGI48_RS03310 0.77 -0.0 698,792 - -0.5 698,817 + HGI48_RS03310 0.82 -1.1 698,818 - HGI48_RS03310 0.82 +2.0 698,838 - HGI48_RS03310 0.85 +0.8 698,838 - HGI48_RS03310 0.85 +0.1 698,993 - +0.3 698,999 + +0.5 698,999 + -0.7 698,999 + -1.7 698,999 + +0.6 699,000 - -1.2 699,166 + HGI48_RS03315 0.11 -2.1 699,166 + HGI48_RS03315 0.11 -0.4 699,167 - HGI48_RS03315 0.11 -0.1 699,338 + HGI48_RS03315 0.24 -0.5 699,339 - HGI48_RS03315 0.24 +0.7 699,339 - HGI48_RS03315 0.24 -1.2 699,452 - HGI48_RS03315 0.33 -0.9 699,518 + HGI48_RS03315 0.38 +1.7 699,656 + HGI48_RS03315 0.48 +0.1 699,656 + HGI48_RS03315 0.48 -0.0 699,656 + HGI48_RS03315 0.48 +2.1 699,656 + HGI48_RS03315 0.48 +0.7 699,657 - HGI48_RS03315 0.48 -1.5 699,657 - HGI48_RS03315 0.48 -0.4 699,657 - HGI48_RS03315 0.48 -0.3 699,657 - HGI48_RS03315 0.48 +0.1 699,783 + +0.5 699,951 + HGI48_RS03315 0.70 -0.2 699,951 + HGI48_RS03315 0.70 -1.5 699,951 + HGI48_RS03315 0.70 +0.0
Or see this region's nucleotide sequence