Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02840

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02835 and HGI48_RS02840 are separated by 146 nucleotidesHGI48_RS02840 and HGI48_RS02845 overlap by 1 nucleotides HGI48_RS02835: HGI48_RS02835 - pectate lyase, at 611,139 to 612,086 _RS02835 HGI48_RS02840: HGI48_RS02840 - transcriptional regulator UhpA, at 612,233 to 612,823 _RS02840 HGI48_RS02845: HGI48_RS02845 - signal transduction histidine-protein kinase/phosphatase UhpB, at 612,823 to 614,334 _RS02845 Position (kb) 612 613Strain fitness (log2 ratio) -2 -1 0 1 2 3at 611.301 kb on - strand, within HGI48_RS02835at 611.448 kb on - strand, within HGI48_RS02835at 611.502 kb on - strand, within HGI48_RS02835at 611.522 kb on + strand, within HGI48_RS02835at 611.523 kb on - strand, within HGI48_RS02835at 611.523 kb on - strand, within HGI48_RS02835at 611.543 kb on + strand, within HGI48_RS02835at 611.543 kb on + strand, within HGI48_RS02835at 611.543 kb on + strand, within HGI48_RS02835at 611.543 kb on + strand, within HGI48_RS02835at 611.578 kb on - strand, within HGI48_RS02835at 611.688 kb on + strand, within HGI48_RS02835at 611.724 kb on + strand, within HGI48_RS02835at 611.724 kb on + strand, within HGI48_RS02835at 611.725 kb on - strand, within HGI48_RS02835at 611.735 kb on + strand, within HGI48_RS02835at 611.736 kb on - strand, within HGI48_RS02835at 611.736 kb on - strand, within HGI48_RS02835at 611.736 kb on - strand, within HGI48_RS02835at 611.736 kb on - strand, within HGI48_RS02835at 611.736 kb on - strand, within HGI48_RS02835at 611.736 kb on - strand, within HGI48_RS02835at 611.739 kb on + strand, within HGI48_RS02835at 611.739 kb on + strand, within HGI48_RS02835at 611.739 kb on + strand, within HGI48_RS02835at 611.740 kb on - strand, within HGI48_RS02835at 611.740 kb on - strand, within HGI48_RS02835at 611.740 kb on - strand, within HGI48_RS02835at 611.772 kb on + strandat 611.772 kb on + strand, within HGI48_RS02835at 611.773 kb on - strandat 611.773 kb on - strand, within HGI48_RS02835at 611.775 kb on + strandat 611.785 kb on - strand, within HGI48_RS02835at 611.785 kb on - strand, within HGI48_RS02835at 611.785 kb on - strand, within HGI48_RS02835at 611.787 kb on - strand, within HGI48_RS02835at 611.787 kb on - strand, within HGI48_RS02835at 611.806 kb on - strand, within HGI48_RS02835at 611.838 kb on - strand, within HGI48_RS02835at 611.853 kb on + strand, within HGI48_RS02835at 611.855 kb on + strand, within HGI48_RS02835at 611.855 kb on + strand, within HGI48_RS02835at 611.855 kb on + strand, within HGI48_RS02835at 611.856 kb on - strand, within HGI48_RS02835at 611.859 kb on + strand, within HGI48_RS02835at 611.859 kb on + strand, within HGI48_RS02835at 611.859 kb on + strand, within HGI48_RS02835at 611.860 kb on - strand, within HGI48_RS02835at 611.860 kb on - strand, within HGI48_RS02835at 611.882 kb on + strand, within HGI48_RS02835at 611.903 kb on + strand, within HGI48_RS02835at 611.994 kb on + strandat 611.994 kb on + strandat 611.995 kb on - strandat 611.995 kb on - strandat 612.000 kb on + strandat 612.000 kb on + strandat 612.001 kb on - strandat 612.001 kb on - strandat 612.045 kb on + strandat 612.046 kb on - strandat 612.046 kb on - strandat 612.119 kb on + strandat 612.126 kb on + strandat 612.126 kb on + strandat 612.126 kb on + strandat 612.127 kb on - strandat 612.127 kb on - strandat 612.127 kb on - strandat 612.127 kb on - strandat 612.127 kb on - strandat 612.127 kb on - strandat 612.127 kb on - strandat 612.133 kb on + strandat 612.134 kb on - strandat 612.148 kb on + strandat 612.148 kb on + strandat 612.148 kb on + strandat 612.148 kb on + strandat 612.148 kb on + strandat 612.148 kb on + strandat 612.148 kb on + strandat 612.157 kb on - strandat 612.157 kb on - strandat 612.197 kb on + strandat 612.202 kb on + strandat 612.202 kb on + strandat 612.203 kb on - strandat 612.203 kb on - strandat 612.203 kb on - strandat 612.203 kb on - strandat 612.203 kb on - strandat 612.203 kb on - strandat 612.203 kb on - strandat 612.239 kb on - strandat 612.265 kb on + strandat 612.266 kb on - strandat 612.266 kb on - strandat 612.266 kb on - strandat 612.266 kb on - strandat 612.312 kb on + strand, within HGI48_RS02840at 612.312 kb on + strand, within HGI48_RS02840at 612.312 kb on + strand, within HGI48_RS02840at 612.312 kb on + strand, within HGI48_RS02840at 612.312 kb on + strand, within HGI48_RS02840at 612.312 kb on + strandat 612.312 kb on + strand, within HGI48_RS02840at 612.313 kb on - strand, within HGI48_RS02840at 612.313 kb on - strand, within HGI48_RS02840at 612.313 kb on - strandat 612.313 kb on - strand, within HGI48_RS02840at 612.313 kb on - strand, within HGI48_RS02840at 612.313 kb on - strand, within HGI48_RS02840at 612.385 kb on + strandat 612.385 kb on + strand, within HGI48_RS02840at 612.385 kb on + strandat 612.385 kb on + strand, within HGI48_RS02840at 612.385 kb on + strand, within HGI48_RS02840at 612.385 kb on + strand, within HGI48_RS02840at 612.385 kb on + strand, within HGI48_RS02840at 612.386 kb on - strand, within HGI48_RS02840at 612.394 kb on + strandat 612.460 kb on + strandat 612.460 kb on + strand, within HGI48_RS02840at 612.460 kb on + strandat 612.460 kb on + strand, within HGI48_RS02840at 612.460 kb on + strand, within HGI48_RS02840at 612.461 kb on - strand, within HGI48_RS02840at 612.461 kb on - strand, within HGI48_RS02840at 612.461 kb on - strand, within HGI48_RS02840at 612.461 kb on - strandat 612.461 kb on - strand, within HGI48_RS02840at 612.461 kb on - strand, within HGI48_RS02840at 612.492 kb on + strand, within HGI48_RS02840at 612.493 kb on - strand, within HGI48_RS02840at 612.493 kb on - strand, within HGI48_RS02840at 612.493 kb on - strand, within HGI48_RS02840at 612.593 kb on + strand, within HGI48_RS02840at 612.594 kb on - strand, within HGI48_RS02840at 612.835 kb on - strandat 612.835 kb on - strandat 612.837 kb on + strandat 612.837 kb on + strandat 612.838 kb on - strandat 612.838 kb on - strandat 612.838 kb on - strandat 612.870 kb on + strandat 612.870 kb on + strandat 612.871 kb on - strandat 612.871 kb on - strandat 613.079 kb on + strand, within HGI48_RS02845at 613.079 kb on + strand, within HGI48_RS02845at 613.080 kb on - strand, within HGI48_RS02845at 613.094 kb on + strand, within HGI48_RS02845at 613.094 kb on + strand, within HGI48_RS02845at 613.303 kb on + strand, within HGI48_RS02845at 613.303 kb on + strand, within HGI48_RS02845at 613.303 kb on + strand, within HGI48_RS02845at 613.303 kb on + strand, within HGI48_RS02845at 613.303 kb on + strand, within HGI48_RS02845at 613.304 kb on - strand, within HGI48_RS02845at 613.304 kb on - strand, within HGI48_RS02845at 613.304 kb on - strand, within HGI48_RS02845at 613.304 kb on - strand, within HGI48_RS02845at 613.304 kb on - strand, within HGI48_RS02845at 613.387 kb on + strand, within HGI48_RS02845at 613.387 kb on + strandat 613.388 kb on - strand, within HGI48_RS02845at 613.388 kb on - strand, within HGI48_RS02845at 613.388 kb on - strand, within HGI48_RS02845at 613.388 kb on - strand, within HGI48_RS02845at 613.453 kb on - strand, within HGI48_RS02845at 613.498 kb on + strand, within HGI48_RS02845at 613.638 kb on + strand, within HGI48_RS02845at 613.639 kb on - strand, within HGI48_RS02845at 613.639 kb on - strand, within HGI48_RS02845at 613.660 kb on - strand, within HGI48_RS02845at 613.729 kb on + strand, within HGI48_RS02845at 613.729 kb on + strand, within HGI48_RS02845at 613.729 kb on + strand, within HGI48_RS02845at 613.729 kb on + strandat 613.729 kb on + strandat 613.730 kb on - strand, within HGI48_RS02845at 613.730 kb on - strand, within HGI48_RS02845at 613.730 kb on - strand, within HGI48_RS02845at 613.806 kb on + strand, within HGI48_RS02845at 613.807 kb on - strand, within HGI48_RS02845

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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611,301 - HGI48_RS02835 0.17 -1.9
611,448 - HGI48_RS02835 0.33 -1.9
611,502 - HGI48_RS02835 0.38 -0.4
611,522 + HGI48_RS02835 0.40 +0.5
611,523 - HGI48_RS02835 0.41 +0.5
611,523 - HGI48_RS02835 0.41 -0.7
611,543 + HGI48_RS02835 0.43 +0.4
611,543 + HGI48_RS02835 0.43 -0.9
611,543 + HGI48_RS02835 0.43 -0.3
611,543 + HGI48_RS02835 0.43 -0.3
611,578 - HGI48_RS02835 0.46 -0.9
611,688 + HGI48_RS02835 0.58 +0.9
611,724 + HGI48_RS02835 0.62 +1.0
611,724 + HGI48_RS02835 0.62 -0.5
611,725 - HGI48_RS02835 0.62 -0.2
611,735 + HGI48_RS02835 0.63 -1.4
611,736 - HGI48_RS02835 0.63 -0.9
611,736 - HGI48_RS02835 0.63 -1.4
611,736 - HGI48_RS02835 0.63 -1.9
611,736 - HGI48_RS02835 0.63 +0.4
611,736 - HGI48_RS02835 0.63 +1.0
611,736 - HGI48_RS02835 0.63 +0.9
611,739 + HGI48_RS02835 0.63 -1.1
611,739 + HGI48_RS02835 0.63 +1.7
611,739 + HGI48_RS02835 0.63 -0.7
611,740 - HGI48_RS02835 0.63 +2.3
611,740 - HGI48_RS02835 0.63 +1.1
611,740 - HGI48_RS02835 0.63 +0.1
611,772 + -0.4
611,772 + HGI48_RS02835 0.67 -1.3
611,773 - +1.1
611,773 - HGI48_RS02835 0.67 +0.1
611,775 + +0.6
611,785 - HGI48_RS02835 0.68 -1.9
611,785 - HGI48_RS02835 0.68 -0.2
611,785 - HGI48_RS02835 0.68 +1.4
611,787 - HGI48_RS02835 0.68 -0.1
611,787 - HGI48_RS02835 0.68 +0.6
611,806 - HGI48_RS02835 0.70 +0.1
611,838 - HGI48_RS02835 0.74 -1.2
611,853 + HGI48_RS02835 0.75 -0.2
611,855 + HGI48_RS02835 0.76 +0.1
611,855 + HGI48_RS02835 0.76 -0.0
611,855 + HGI48_RS02835 0.76 -0.6
611,856 - HGI48_RS02835 0.76 +0.1
611,859 + HGI48_RS02835 0.76 -2.0
611,859 + HGI48_RS02835 0.76 +0.9
611,859 + HGI48_RS02835 0.76 +0.1
611,860 - HGI48_RS02835 0.76 +0.1
611,860 - HGI48_RS02835 0.76 -0.7
611,882 + HGI48_RS02835 0.78 +0.2
611,903 + HGI48_RS02835 0.81 -0.4
611,994 + -1.0
611,994 + -0.8
611,995 - -1.2
611,995 - -1.4
612,000 + -1.7
612,000 + -0.4
612,001 - +0.1
612,001 - -0.9
612,045 + -1.2
612,046 - -0.4
612,046 - -0.8
612,119 + -2.7
612,126 + +1.9
612,126 + +0.1
612,126 + +1.1
612,127 - -1.2
612,127 - -0.4
612,127 - +1.1
612,127 - +0.6
612,127 - -1.9
612,127 - +0.9
612,127 - +0.6
612,133 + -2.0
612,134 - +1.9
612,148 + +2.5
612,148 + -0.3
612,148 + -0.3
612,148 + +0.7
612,148 + +3.0
612,148 + -0.1
612,148 + +0.4
612,157 - -1.1
612,157 - -2.4
612,197 + -0.0
612,202 + -0.4
612,202 + +0.1
612,203 - +0.3
612,203 - -0.4
612,203 - -0.0
612,203 - -2.2
612,203 - -0.4
612,203 - -1.0
612,203 - +0.1
612,239 - -0.9
612,265 + +0.7
612,266 - +0.4
612,266 - +0.4
612,266 - +1.1
612,266 - -1.7
612,312 + HGI48_RS02840 0.13 -1.4
612,312 + HGI48_RS02840 0.13 -0.7
612,312 + HGI48_RS02840 0.13 -0.4
612,312 + HGI48_RS02840 0.13 +0.1
612,312 + HGI48_RS02840 0.13 +0.5
612,312 + +0.1
612,312 + HGI48_RS02840 0.13 -1.6
612,313 - HGI48_RS02840 0.14 +0.1
612,313 - HGI48_RS02840 0.14 +0.1
612,313 - -0.4
612,313 - HGI48_RS02840 0.14 +0.0
612,313 - HGI48_RS02840 0.14 +1.0
612,313 - HGI48_RS02840 0.14 -1.7
612,385 + -0.4
612,385 + HGI48_RS02840 0.26 -2.0
612,385 + +0.1
612,385 + HGI48_RS02840 0.26 -0.7
612,385 + HGI48_RS02840 0.26 +0.4
612,385 + HGI48_RS02840 0.26 -0.5
612,385 + HGI48_RS02840 0.26 -0.1
612,386 - HGI48_RS02840 0.26 -0.9
612,394 + -0.4
612,460 + +0.6
612,460 + HGI48_RS02840 0.38 -1.0
612,460 + +0.6
612,460 + HGI48_RS02840 0.38 -0.4
612,460 + HGI48_RS02840 0.38 -0.2
612,461 - HGI48_RS02840 0.39 -1.4
612,461 - HGI48_RS02840 0.39 -1.4
612,461 - HGI48_RS02840 0.39 -0.4
612,461 - +1.1
612,461 - HGI48_RS02840 0.39 +1.9
612,461 - HGI48_RS02840 0.39 +1.4
612,492 + HGI48_RS02840 0.44 -0.1
612,493 - HGI48_RS02840 0.44 -1.6
612,493 - HGI48_RS02840 0.44 +0.3
612,493 - HGI48_RS02840 0.44 -0.4
612,593 + HGI48_RS02840 0.61 -2.2
612,594 - HGI48_RS02840 0.61 -0.3
612,835 - -0.4
612,835 - -0.0
612,837 + -1.3
612,837 + -0.1
612,838 - +0.3
612,838 - -1.2
612,838 - +2.1
612,870 + -0.6
612,870 + +0.6
612,871 - -0.1
612,871 - -0.1
613,079 + HGI48_RS02845 0.17 -1.2
613,079 + HGI48_RS02845 0.17 -0.0
613,080 - HGI48_RS02845 0.17 +1.0
613,094 + HGI48_RS02845 0.18 +1.0
613,094 + HGI48_RS02845 0.18 -0.1
613,303 + HGI48_RS02845 0.32 +0.3
613,303 + HGI48_RS02845 0.32 +0.1
613,303 + HGI48_RS02845 0.32 -0.1
613,303 + HGI48_RS02845 0.32 -1.0
613,303 + HGI48_RS02845 0.32 -1.4
613,304 - HGI48_RS02845 0.32 -0.2
613,304 - HGI48_RS02845 0.32 -1.0
613,304 - HGI48_RS02845 0.32 +0.1
613,304 - HGI48_RS02845 0.32 -0.8
613,304 - HGI48_RS02845 0.32 -1.0
613,387 + HGI48_RS02845 0.37 -2.1
613,387 + +0.1
613,388 - HGI48_RS02845 0.37 -0.4
613,388 - HGI48_RS02845 0.37 -0.1
613,388 - HGI48_RS02845 0.37 -0.7
613,388 - HGI48_RS02845 0.37 -0.7
613,453 - HGI48_RS02845 0.42 +0.3
613,498 + HGI48_RS02845 0.45 -1.4
613,638 + HGI48_RS02845 0.54 +0.1
613,639 - HGI48_RS02845 0.54 +1.1
613,639 - HGI48_RS02845 0.54 +0.1
613,660 - HGI48_RS02845 0.55 -1.7
613,729 + HGI48_RS02845 0.60 -0.3
613,729 + HGI48_RS02845 0.60 -0.3
613,729 + HGI48_RS02845 0.60 +0.8
613,729 + +0.6
613,729 + +2.5
613,730 - HGI48_RS02845 0.60 +0.6
613,730 - HGI48_RS02845 0.60 -1.7
613,730 - HGI48_RS02845 0.60 +0.5
613,806 + HGI48_RS02845 0.65 +0.6
613,807 - HGI48_RS02845 0.65 -0.1

Or see this region's nucleotide sequence