Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02430 and HGI48_RS02435 are separated by 405 nucleotides HGI48_RS02435 and HGI48_RS02440 are separated by 31 nucleotides HGI48_RS02440 and HGI48_RS02445 are separated by 261 nucleotides
HGI48_RS02430: HGI48_RS02430 - Tar ligand binding domain-containing protein, at 525,944 to 527,662
_RS02430
HGI48_RS02435: HGI48_RS02435 - amidohydrolase, at 528,068 to 529,237
_RS02435
HGI48_RS02440: HGI48_RS02440 - hypothetical protein, at 529,269 to 529,511
_RS02440
HGI48_RS02445: HGI48_RS02445 - ATP-binding cassette domain-containing protein, at 529,773 to 530,309
_RS02445
Position (kb) 528
529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 527.232 kb on + strand at 527.232 kb on + strand, within HGI48_RS02430 at 527.232 kb on + strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand, within HGI48_RS02430 at 527.233 kb on - strand at 527.413 kb on + strand, within HGI48_RS02430 at 527.413 kb on + strand, within HGI48_RS02430 at 527.413 kb on + strand at 527.420 kb on - strand, within HGI48_RS02430 at 527.420 kb on - strand, within HGI48_RS02430 at 527.696 kb on + strand at 527.702 kb on + strand at 527.702 kb on + strand at 527.703 kb on - strand at 527.703 kb on - strand at 527.703 kb on - strand at 527.747 kb on - strand at 527.780 kb on + strand at 527.781 kb on - strand at 527.781 kb on - strand at 527.815 kb on - strand at 527.846 kb on + strand at 527.847 kb on - strand at 527.847 kb on - strand at 527.848 kb on + strand at 527.849 kb on - strand at 527.851 kb on + strand at 527.851 kb on + strand at 527.852 kb on - strand at 527.862 kb on + strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.863 kb on - strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.906 kb on + strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.907 kb on - strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.921 kb on + strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.922 kb on - strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.935 kb on + strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.936 kb on - strand at 527.958 kb on + strand at 527.959 kb on - strand at 527.959 kb on - strand at 528.092 kb on - strand at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.349 kb on + strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.350 kb on - strand, within HGI48_RS02435 at 528.404 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.438 kb on + strand, within HGI48_RS02435 at 528.439 kb on - strand, within HGI48_RS02435 at 528.529 kb on + strand, within HGI48_RS02435 at 528.529 kb on + strand at 528.529 kb on + strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.530 kb on - strand, within HGI48_RS02435 at 528.533 kb on + strand at 528.534 kb on - strand, within HGI48_RS02435 at 528.534 kb on - strand, within HGI48_RS02435 at 528.811 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand, within HGI48_RS02435 at 528.881 kb on + strand at 528.882 kb on - strand, within HGI48_RS02435 at 528.882 kb on - strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.912 kb on + strand, within HGI48_RS02435 at 528.913 kb on - strand at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand, within HGI48_RS02435 at 529.064 kb on + strand at 529.065 kb on - strand, within HGI48_RS02435 at 529.065 kb on - strand, within HGI48_RS02435 at 529.072 kb on - strand, within HGI48_RS02435 at 529.072 kb on - strand, within HGI48_RS02435 at 529.091 kb on + strand, within HGI48_RS02435 at 529.091 kb on + strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.092 kb on - strand, within HGI48_RS02435 at 529.148 kb on + strand at 529.157 kb on - strand at 529.238 kb on + strand at 529.239 kb on - strand at 529.239 kb on - strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.266 kb on + strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.267 kb on - strand at 529.270 kb on + strand at 529.271 kb on - strand at 529.281 kb on - strand at 529.281 kb on - strand at 529.525 kb on + strand at 529.525 kb on + strand at 529.525 kb on + strand at 529.526 kb on - strand at 529.526 kb on - strand at 529.526 kb on - strand at 529.537 kb on + strand at 529.538 kb on - strand at 529.538 kb on - strand at 529.538 kb on - strand at 529.550 kb on - strand at 529.550 kb on - strand at 529.638 kb on + strand at 529.638 kb on + strand at 529.638 kb on + strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.639 kb on - strand at 529.710 kb on + strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.711 kb on - strand at 529.714 kb on + strand at 529.715 kb on - strand at 529.804 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.813 kb on + strand at 529.814 kb on - strand at 529.814 kb on - strand at 529.814 kb on - strand at 529.831 kb on + strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.832 kb on - strand, within HGI48_RS02445 at 529.840 kb on + strand at 529.841 kb on - strand, within HGI48_RS02445 at 529.849 kb on + strand at 529.849 kb on + strand at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand, within HGI48_RS02445 at 529.849 kb on + strand at 529.849 kb on + strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.850 kb on - strand, within HGI48_RS02445 at 529.858 kb on + strand at 529.867 kb on + strand, within HGI48_RS02445 at 529.867 kb on + strand, within HGI48_RS02445 at 529.867 kb on + strand, within HGI48_RS02445 at 529.868 kb on - strand, within HGI48_RS02445 at 529.868 kb on - strand, within HGI48_RS02445 at 529.876 kb on + strand, within HGI48_RS02445 at 529.991 kb on + strand, within HGI48_RS02445 at 529.992 kb on - strand, within HGI48_RS02445 at 529.992 kb on - strand, within HGI48_RS02445 at 530.051 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.054 kb on - strand, within HGI48_RS02445 at 530.189 kb on + strand, within HGI48_RS02445
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 527,232 + -0.4 527,232 + HGI48_RS02430 0.75 -0.4 527,232 + HGI48_RS02430 0.75 -0.1 527,233 - HGI48_RS02430 0.75 -0.4 527,233 - HGI48_RS02430 0.75 -1.6 527,233 - HGI48_RS02430 0.75 -0.4 527,233 - HGI48_RS02430 0.75 +0.2 527,233 - HGI48_RS02430 0.75 -0.2 527,233 - +1.2 527,413 + HGI48_RS02430 0.85 +0.3 527,413 + HGI48_RS02430 0.85 +2.3 527,413 + +0.2 527,420 - HGI48_RS02430 0.86 -0.3 527,420 - HGI48_RS02430 0.86 +0.2 527,696 + -0.3 527,702 + +1.4 527,702 + -1.4 527,703 - +1.2 527,703 - -1.1 527,703 - -0.1 527,747 - -0.1 527,780 + +1.0 527,781 - +0.2 527,781 - -2.0 527,815 - -1.4 527,846 + +0.0 527,847 - -0.4 527,847 - -1.5 527,848 + +0.0 527,849 - +0.3 527,851 + -0.0 527,851 + -1.3 527,852 - -1.7 527,862 + +0.4 527,863 - -0.2 527,863 - +0.6 527,863 - -0.4 527,863 - +0.6 527,863 - -1.1 527,906 + -0.2 527,906 + -0.6 527,906 + +0.6 527,906 + -0.3 527,907 - +0.2 527,907 - +1.2 527,907 - -0.1 527,907 - +0.4 527,921 + +0.6 527,921 + +1.0 527,921 + -0.1 527,921 + -0.0 527,921 + -0.3 527,921 + -2.0 527,921 + -0.2 527,922 - -0.1 527,922 - +0.1 527,922 - +1.2 527,922 - +1.8 527,935 + -0.8 527,935 + -1.1 527,935 + +1.2 527,935 + -0.7 527,935 + +0.6 527,935 + -0.4 527,936 - +1.2 527,936 - +0.8 527,936 - +1.2 527,936 - +0.9 527,936 - +1.8 527,936 - -0.7 527,936 - +2.2 527,936 - -2.0 527,958 + +1.9 527,959 - -0.8 527,959 - +1.2 528,092 - +0.1 528,349 + HGI48_RS02435 0.24 -0.8 528,349 + HGI48_RS02435 0.24 -0.8 528,349 + HGI48_RS02435 0.24 -0.1 528,349 + HGI48_RS02435 0.24 -0.2 528,349 + HGI48_RS02435 0.24 -2.5 528,349 + HGI48_RS02435 0.24 +0.2 528,349 + HGI48_RS02435 0.24 -0.6 528,349 + HGI48_RS02435 0.24 +0.8 528,349 + HGI48_RS02435 0.24 -1.6 528,349 + HGI48_RS02435 0.24 -0.6 528,350 - HGI48_RS02435 0.24 +0.2 528,350 - HGI48_RS02435 0.24 +0.4 528,350 - HGI48_RS02435 0.24 -1.1 528,350 - HGI48_RS02435 0.24 -1.1 528,350 - HGI48_RS02435 0.24 +0.8 528,404 + HGI48_RS02435 0.29 -0.8 528,438 + HGI48_RS02435 0.32 +1.2 528,438 + HGI48_RS02435 0.32 +0.2 528,438 + HGI48_RS02435 0.32 +0.3 528,439 - HGI48_RS02435 0.32 -0.4 528,529 + HGI48_RS02435 0.39 +1.4 528,529 + -0.4 528,529 + HGI48_RS02435 0.39 +0.3 528,530 - HGI48_RS02435 0.39 -1.6 528,530 - HGI48_RS02435 0.39 -1.6 528,530 - HGI48_RS02435 0.39 -1.8 528,533 + +0.6 528,534 - HGI48_RS02435 0.40 -1.0 528,534 - HGI48_RS02435 0.40 -1.1 528,811 + HGI48_RS02435 0.64 -0.0 528,881 + HGI48_RS02435 0.69 -0.1 528,881 + HGI48_RS02435 0.69 -2.3 528,881 + -0.4 528,882 - HGI48_RS02435 0.70 -0.1 528,882 - HGI48_RS02435 0.70 +0.2 528,912 + HGI48_RS02435 0.72 +0.2 528,912 + HGI48_RS02435 0.72 -0.6 528,912 + HGI48_RS02435 0.72 -0.0 528,912 + HGI48_RS02435 0.72 -0.2 528,913 - +1.9 529,064 + HGI48_RS02435 0.85 +0.1 529,064 + HGI48_RS02435 0.85 -0.8 529,064 + HGI48_RS02435 0.85 +0.9 529,064 + +3.2 529,065 - HGI48_RS02435 0.85 +1.2 529,065 - HGI48_RS02435 0.85 -0.5 529,072 - HGI48_RS02435 0.86 +1.0 529,072 - HGI48_RS02435 0.86 -0.8 529,091 + HGI48_RS02435 0.87 +0.5 529,091 + HGI48_RS02435 0.87 +1.8 529,092 - HGI48_RS02435 0.88 +0.9 529,092 - HGI48_RS02435 0.88 -0.6 529,092 - HGI48_RS02435 0.88 -1.6 529,148 + +0.4 529,157 - -3.3 529,238 + -0.5 529,239 - -0.8 529,239 - +1.0 529,266 + +0.5 529,266 + +0.1 529,266 + +0.0 529,266 + +1.0 529,266 + -1.4 529,266 + -0.4 529,266 + +0.3 529,266 + -0.8 529,266 + -1.6 529,266 + -0.8 529,266 + -0.4 529,267 - -0.8 529,267 - +0.9 529,267 - -0.0 529,267 - -0.0 529,267 - +4.8 529,267 - -0.6 529,270 + -1.1 529,271 - +0.2 529,281 - -0.4 529,281 - +0.1 529,525 + +1.4 529,525 + +0.6 529,525 + -0.6 529,526 - -0.8 529,526 - +1.8 529,526 - -0.8 529,537 + +0.2 529,538 - -0.6 529,538 - -2.0 529,538 - +0.3 529,550 - -1.0 529,550 - -0.6 529,638 + +0.5 529,638 + -1.4 529,638 + -0.4 529,639 - +1.3 529,639 - +0.4 529,639 - +0.0 529,639 - +0.3 529,710 + +0.7 529,711 - +0.4 529,711 - +0.8 529,711 - +0.9 529,711 - -1.0 529,711 - -0.8 529,714 + -0.1 529,715 - -0.4 529,804 + +3.2 529,813 + +1.2 529,813 + +0.7 529,813 + -0.8 529,813 + -1.1 529,814 - -0.0 529,814 - -0.6 529,814 - -0.1 529,831 + HGI48_RS02445 0.11 +1.4 529,832 - HGI48_RS02445 0.11 -0.6 529,832 - HGI48_RS02445 0.11 -1.8 529,832 - HGI48_RS02445 0.11 +0.2 529,832 - HGI48_RS02445 0.11 -0.3 529,832 - HGI48_RS02445 0.11 +1.5 529,832 - HGI48_RS02445 0.11 +0.3 529,832 - HGI48_RS02445 0.11 -0.0 529,832 - HGI48_RS02445 0.11 -0.0 529,832 - HGI48_RS02445 0.11 +0.4 529,840 + +1.2 529,841 - HGI48_RS02445 0.13 +0.2 529,849 + -0.4 529,849 + -0.4 529,849 + HGI48_RS02445 0.14 -0.5 529,849 + HGI48_RS02445 0.14 -1.4 529,849 + HGI48_RS02445 0.14 +0.1 529,849 + +1.2 529,849 + HGI48_RS02445 0.14 -0.7 529,850 - HGI48_RS02445 0.14 -0.2 529,850 - HGI48_RS02445 0.14 +0.4 529,850 - HGI48_RS02445 0.14 +1.0 529,850 - HGI48_RS02445 0.14 -0.6 529,858 + +1.2 529,867 + HGI48_RS02445 0.18 -0.8 529,867 + HGI48_RS02445 0.18 -0.6 529,867 + HGI48_RS02445 0.18 -0.8 529,868 - HGI48_RS02445 0.18 -0.4 529,868 - HGI48_RS02445 0.18 +0.8 529,876 + HGI48_RS02445 0.19 +0.9 529,991 + HGI48_RS02445 0.41 +0.0 529,992 - HGI48_RS02445 0.41 +1.8 529,992 - HGI48_RS02445 0.41 +0.5 530,051 - HGI48_RS02445 0.52 -1.1 530,054 - +2.2 530,054 - HGI48_RS02445 0.52 -1.6 530,054 - HGI48_RS02445 0.52 -0.1 530,054 - HGI48_RS02445 0.52 -0.0 530,054 - HGI48_RS02445 0.52 +0.6 530,054 - HGI48_RS02445 0.52 -0.1 530,189 + HGI48_RS02445 0.77 +2.0
Or see this region's nucleotide sequence