Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02405

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02400 and HGI48_RS02405 are separated by 359 nucleotidesHGI48_RS02405 and HGI48_RS02410 are separated by 130 nucleotidesHGI48_RS02410 and HGI48_RS02415 are separated by 39 nucleotides HGI48_RS02400: HGI48_RS02400 - peptide chain release factor 3, at 519,953 to 521,542 _RS02400 HGI48_RS02405: HGI48_RS02405 - molecular chaperone OsmY, at 521,902 to 522,540 _RS02405 HGI48_RS02410: HGI48_RS02410 - stress-response protein, at 522,671 to 522,859 _RS02410 HGI48_RS02415: HGI48_RS02415 - TatD family hydrolase, at 522,899 to 523,738 _RS02415 Position (kb) 521 522 523Strain fitness (log2 ratio) -2 -1 0 1 2 3at 521.459 kb on + strandat 521.524 kb on + strandat 521.540 kb on + strandat 521.540 kb on + strandat 521.721 kb on + strandat 521.721 kb on + strandat 521.721 kb on + strandat 521.721 kb on + strandat 521.722 kb on - strandat 521.722 kb on - strandat 521.722 kb on - strandat 521.722 kb on - strandat 521.725 kb on + strandat 521.725 kb on + strandat 521.726 kb on - strandat 521.753 kb on + strandat 521.754 kb on - strandat 521.754 kb on - strandat 521.783 kb on + strandat 521.783 kb on + strandat 521.783 kb on + strandat 521.783 kb on + strandat 521.784 kb on - strandat 521.802 kb on + strandat 521.814 kb on + strandat 521.814 kb on + strandat 521.815 kb on - strandat 521.815 kb on - strandat 521.834 kb on - strandat 521.834 kb on - strandat 521.882 kb on + strandat 521.897 kb on + strandat 521.897 kb on + strandat 521.922 kb on - strandat 521.932 kb on - strandat 521.932 kb on - strandat 521.936 kb on - strandat 521.936 kb on - strandat 521.936 kb on - strandat 521.936 kb on - strandat 521.957 kb on + strandat 521.958 kb on - strandat 521.968 kb on - strand, within HGI48_RS02405at 522.031 kb on - strand, within HGI48_RS02405at 522.085 kb on + strand, within HGI48_RS02405at 522.085 kb on + strand, within HGI48_RS02405at 522.085 kb on + strand, within HGI48_RS02405at 522.085 kb on + strand, within HGI48_RS02405at 522.085 kb on + strand, within HGI48_RS02405at 522.086 kb on - strand, within HGI48_RS02405at 522.086 kb on - strand, within HGI48_RS02405at 522.086 kb on - strandat 522.086 kb on - strand, within HGI48_RS02405at 522.086 kb on - strand, within HGI48_RS02405at 522.086 kb on - strand, within HGI48_RS02405at 522.105 kb on + strandat 522.279 kb on + strand, within HGI48_RS02405at 522.280 kb on - strand, within HGI48_RS02405at 522.280 kb on - strand, within HGI48_RS02405at 522.297 kb on + strandat 522.298 kb on - strand, within HGI48_RS02405at 522.325 kb on + strand, within HGI48_RS02405at 522.325 kb on + strand, within HGI48_RS02405at 522.325 kb on + strand, within HGI48_RS02405at 522.325 kb on + strand, within HGI48_RS02405at 522.325 kb on + strandat 522.325 kb on + strand, within HGI48_RS02405at 522.325 kb on + strand, within HGI48_RS02405at 522.325 kb on + strand, within HGI48_RS02405at 522.326 kb on - strand, within HGI48_RS02405at 522.326 kb on - strand, within HGI48_RS02405at 522.326 kb on - strand, within HGI48_RS02405at 522.326 kb on - strand, within HGI48_RS02405at 522.326 kb on - strand, within HGI48_RS02405at 522.326 kb on - strand, within HGI48_RS02405at 522.326 kb on - strand, within HGI48_RS02405at 522.363 kb on + strand, within HGI48_RS02405at 522.364 kb on - strandat 522.364 kb on - strand, within HGI48_RS02405at 522.368 kb on + strand, within HGI48_RS02405at 522.368 kb on + strandat 522.402 kb on + strand, within HGI48_RS02405at 522.403 kb on - strandat 522.403 kb on - strand, within HGI48_RS02405at 522.407 kb on + strand, within HGI48_RS02405at 522.408 kb on - strand, within HGI48_RS02405at 522.408 kb on - strand, within HGI48_RS02405at 522.505 kb on - strandat 522.505 kb on - strandat 522.577 kb on - strandat 522.594 kb on - strandat 522.594 kb on - strandat 522.604 kb on + strandat 522.604 kb on + strandat 522.604 kb on + strandat 522.604 kb on + strandat 522.604 kb on + strandat 522.605 kb on - strandat 522.605 kb on - strandat 522.605 kb on - strandat 522.605 kb on - strandat 522.605 kb on - strandat 522.799 kb on - strand, within HGI48_RS02410at 522.799 kb on - strand, within HGI48_RS02410at 522.806 kb on + strand, within HGI48_RS02410at 522.807 kb on - strand, within HGI48_RS02410at 522.807 kb on - strand, within HGI48_RS02410at 522.831 kb on + strand, within HGI48_RS02410at 522.832 kb on - strand, within HGI48_RS02410at 522.832 kb on - strand, within HGI48_RS02410at 522.885 kb on + strandat 522.886 kb on - strandat 522.886 kb on - strandat 522.886 kb on - strandat 523.065 kb on - strand, within HGI48_RS02415at 523.109 kb on + strandat 523.109 kb on + strand, within HGI48_RS02415at 523.110 kb on - strand, within HGI48_RS02415at 523.136 kb on + strand, within HGI48_RS02415at 523.136 kb on + strand, within HGI48_RS02415at 523.136 kb on + strand, within HGI48_RS02415at 523.136 kb on + strand, within HGI48_RS02415at 523.136 kb on + strand, within HGI48_RS02415at 523.137 kb on - strand, within HGI48_RS02415at 523.137 kb on - strand, within HGI48_RS02415at 523.139 kb on - strandat 523.238 kb on + strand, within HGI48_RS02415at 523.238 kb on + strand, within HGI48_RS02415at 523.238 kb on + strand, within HGI48_RS02415at 523.238 kb on + strand, within HGI48_RS02415at 523.238 kb on + strand, within HGI48_RS02415at 523.238 kb on + strand, within HGI48_RS02415at 523.238 kb on + strand, within HGI48_RS02415at 523.238 kb on + strandat 523.238 kb on + strand, within HGI48_RS02415at 523.239 kb on - strand, within HGI48_RS02415at 523.239 kb on - strand, within HGI48_RS02415at 523.291 kb on + strand, within HGI48_RS02415at 523.291 kb on + strand, within HGI48_RS02415at 523.291 kb on + strand, within HGI48_RS02415at 523.292 kb on - strand, within HGI48_RS02415at 523.292 kb on - strand, within HGI48_RS02415at 523.292 kb on - strand, within HGI48_RS02415at 523.340 kb on - strand, within HGI48_RS02415at 523.363 kb on - strand, within HGI48_RS02415at 523.418 kb on + strand, within HGI48_RS02415at 523.419 kb on - strand, within HGI48_RS02415at 523.451 kb on + strand, within HGI48_RS02415at 523.451 kb on + strand, within HGI48_RS02415at 523.451 kb on + strand, within HGI48_RS02415at 523.452 kb on - strand, within HGI48_RS02415at 523.454 kb on + strand, within HGI48_RS02415at 523.454 kb on + strand, within HGI48_RS02415at 523.454 kb on + strand, within HGI48_RS02415at 523.454 kb on + strand, within HGI48_RS02415at 523.454 kb on + strand, within HGI48_RS02415at 523.454 kb on + strand, within HGI48_RS02415at 523.454 kb on + strand, within HGI48_RS02415at 523.454 kb on + strand, within HGI48_RS02415at 523.455 kb on - strand, within HGI48_RS02415at 523.455 kb on - strand, within HGI48_RS02415at 523.455 kb on - strand, within HGI48_RS02415at 523.455 kb on - strand, within HGI48_RS02415at 523.455 kb on - strand, within HGI48_RS02415at 523.455 kb on - strand, within HGI48_RS02415at 523.477 kb on + strand, within HGI48_RS02415at 523.478 kb on - strand, within HGI48_RS02415at 523.478 kb on - strandat 523.478 kb on - strand, within HGI48_RS02415at 523.482 kb on - strand, within HGI48_RS02415

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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521,459 + +1.8
521,524 + -0.4
521,540 + -0.4
521,540 + +0.4
521,721 + -1.0
521,721 + +2.6
521,721 + +0.6
521,721 + +0.7
521,722 - -0.2
521,722 - -0.4
521,722 - +0.1
521,722 - -0.8
521,725 + -1.6
521,725 + -0.4
521,726 - +0.2
521,753 + +2.4
521,754 - +1.6
521,754 - -0.7
521,783 + +0.8
521,783 + +0.2
521,783 + -0.1
521,783 + -0.1
521,784 - +0.2
521,802 + +1.0
521,814 + -0.4
521,814 + -0.1
521,815 - -0.3
521,815 - +0.4
521,834 - -2.0
521,834 - -2.0
521,882 + -0.4
521,897 + -0.0
521,897 + +0.3
521,922 - -2.0
521,932 - +0.8
521,932 - +2.2
521,936 - +0.8
521,936 - +0.2
521,936 - -0.8
521,936 - -0.8
521,957 + +0.3
521,958 - +0.2
521,968 - HGI48_RS02405 0.10 -0.6
522,031 - HGI48_RS02405 0.20 -1.6
522,085 + HGI48_RS02405 0.29 +0.2
522,085 + HGI48_RS02405 0.29 +0.4
522,085 + HGI48_RS02405 0.29 -0.4
522,085 + HGI48_RS02405 0.29 -1.5
522,085 + HGI48_RS02405 0.29 +0.2
522,086 - HGI48_RS02405 0.29 +0.8
522,086 - HGI48_RS02405 0.29 +1.9
522,086 - +1.6
522,086 - HGI48_RS02405 0.29 -1.4
522,086 - HGI48_RS02405 0.29 +0.2
522,086 - HGI48_RS02405 0.29 +0.0
522,105 + +0.6
522,279 + HGI48_RS02405 0.59 -1.9
522,280 - HGI48_RS02405 0.59 -1.0
522,280 - HGI48_RS02405 0.59 -0.0
522,297 + -0.4
522,298 - HGI48_RS02405 0.62 +1.0
522,325 + HGI48_RS02405 0.66 -1.1
522,325 + HGI48_RS02405 0.66 -1.1
522,325 + HGI48_RS02405 0.66 -0.6
522,325 + HGI48_RS02405 0.66 +1.7
522,325 + +0.6
522,325 + HGI48_RS02405 0.66 -0.4
522,325 + HGI48_RS02405 0.66 -1.4
522,325 + HGI48_RS02405 0.66 +0.2
522,326 - HGI48_RS02405 0.66 +0.2
522,326 - HGI48_RS02405 0.66 -1.4
522,326 - HGI48_RS02405 0.66 +0.8
522,326 - HGI48_RS02405 0.66 -0.0
522,326 - HGI48_RS02405 0.66 +0.2
522,326 - HGI48_RS02405 0.66 +0.8
522,326 - HGI48_RS02405 0.66 +0.8
522,363 + HGI48_RS02405 0.72 +1.2
522,364 - +0.2
522,364 - HGI48_RS02405 0.72 -0.6
522,368 + HGI48_RS02405 0.73 +0.2
522,368 + +1.2
522,402 + HGI48_RS02405 0.78 -0.5
522,403 - +0.6
522,403 - HGI48_RS02405 0.78 +0.6
522,407 + HGI48_RS02405 0.79 -0.4
522,408 - HGI48_RS02405 0.79 -2.1
522,408 - HGI48_RS02405 0.79 -0.1
522,505 - +0.7
522,505 - -1.1
522,577 - -0.8
522,594 - +2.0
522,594 - +1.2
522,604 + +0.9
522,604 + +0.1
522,604 + -0.8
522,604 + -2.1
522,604 + +0.6
522,605 - +2.2
522,605 - -0.6
522,605 - -0.2
522,605 - -1.1
522,605 - +0.4
522,799 - HGI48_RS02410 0.68 -0.8
522,799 - HGI48_RS02410 0.68 -1.3
522,806 + HGI48_RS02410 0.71 +1.9
522,807 - HGI48_RS02410 0.72 +0.9
522,807 - HGI48_RS02410 0.72 -1.4
522,831 + HGI48_RS02410 0.85 +0.5
522,832 - HGI48_RS02410 0.85 -0.8
522,832 - HGI48_RS02410 0.85 +0.9
522,885 + -0.5
522,886 - -1.4
522,886 - -2.0
522,886 - -0.4
523,065 - HGI48_RS02415 0.20 +0.7
523,109 + -0.4
523,109 + HGI48_RS02415 0.25 -0.3
523,110 - HGI48_RS02415 0.25 -0.3
523,136 + HGI48_RS02415 0.28 -0.2
523,136 + HGI48_RS02415 0.28 -0.8
523,136 + HGI48_RS02415 0.28 +0.4
523,136 + HGI48_RS02415 0.28 +0.5
523,136 + HGI48_RS02415 0.28 -2.3
523,137 - HGI48_RS02415 0.28 -0.4
523,137 - HGI48_RS02415 0.28 -1.0
523,139 - -0.4
523,238 + HGI48_RS02415 0.40 +1.2
523,238 + HGI48_RS02415 0.40 -1.1
523,238 + HGI48_RS02415 0.40 -1.6
523,238 + HGI48_RS02415 0.40 +0.9
523,238 + HGI48_RS02415 0.40 -1.1
523,238 + HGI48_RS02415 0.40 -1.6
523,238 + HGI48_RS02415 0.40 -0.1
523,238 + -0.4
523,238 + HGI48_RS02415 0.40 +0.1
523,239 - HGI48_RS02415 0.40 -1.2
523,239 - HGI48_RS02415 0.40 +0.7
523,291 + HGI48_RS02415 0.47 -0.4
523,291 + HGI48_RS02415 0.47 +0.4
523,291 + HGI48_RS02415 0.47 -1.1
523,292 - HGI48_RS02415 0.47 -0.2
523,292 - HGI48_RS02415 0.47 +0.4
523,292 - HGI48_RS02415 0.47 -1.4
523,340 - HGI48_RS02415 0.53 +0.3
523,363 - HGI48_RS02415 0.55 +0.1
523,418 + HGI48_RS02415 0.62 -0.8
523,419 - HGI48_RS02415 0.62 -0.0
523,451 + HGI48_RS02415 0.66 -2.1
523,451 + HGI48_RS02415 0.66 +0.3
523,451 + HGI48_RS02415 0.66 +1.6
523,452 - HGI48_RS02415 0.66 -0.8
523,454 + HGI48_RS02415 0.66 +0.2
523,454 + HGI48_RS02415 0.66 -0.6
523,454 + HGI48_RS02415 0.66 -1.0
523,454 + HGI48_RS02415 0.66 +0.7
523,454 + HGI48_RS02415 0.66 +0.2
523,454 + HGI48_RS02415 0.66 -1.0
523,454 + HGI48_RS02415 0.66 -1.8
523,454 + HGI48_RS02415 0.66 +3.2
523,455 - HGI48_RS02415 0.66 -0.8
523,455 - HGI48_RS02415 0.66 +0.2
523,455 - HGI48_RS02415 0.66 -1.4
523,455 - HGI48_RS02415 0.66 +0.5
523,455 - HGI48_RS02415 0.66 +0.4
523,455 - HGI48_RS02415 0.66 +0.6
523,477 + HGI48_RS02415 0.69 +0.1
523,478 - HGI48_RS02415 0.69 -0.4
523,478 - +0.2
523,478 - HGI48_RS02415 0.69 -0.2
523,482 - HGI48_RS02415 0.69 -0.2

Or see this region's nucleotide sequence