Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01625 and HGI48_RS01630 are separated by 11 nucleotides HGI48_RS01630 and HGI48_RS01635 are separated by 176 nucleotides HGI48_RS01635 and HGI48_RS01640 are separated by 420 nucleotides
HGI48_RS01625: HGI48_RS01625 - glutathionylspermidine synthase family protein, at 358,244 to 359,404
_RS01625
HGI48_RS01630: HGI48_RS01630 - DUF1190 family protein, at 359,416 to 360,168
_RS01630
HGI48_RS01635: HGI48_RS01635 - outer membrane channel protein TolC, at 360,345 to 361,757
_RS01635
HGI48_RS01640: HGI48_RS01640 - ADP-ribose diphosphatase, at 362,178 to 362,819
_RS01640
Position (kb) 360
361
362 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 359.349 kb on + strand at 359.395 kb on + strand at 359.395 kb on + strand at 359.395 kb on + strand at 359.395 kb on + strand at 359.396 kb on - strand at 359.396 kb on - strand at 359.502 kb on + strand at 359.503 kb on - strand, within HGI48_RS01630 at 359.601 kb on + strand, within HGI48_RS01630 at 359.646 kb on + strand, within HGI48_RS01630 at 359.687 kb on + strand, within HGI48_RS01630 at 359.687 kb on + strand, within HGI48_RS01630 at 359.687 kb on + strand, within HGI48_RS01630 at 359.688 kb on - strand, within HGI48_RS01630 at 359.688 kb on - strand, within HGI48_RS01630 at 359.711 kb on + strand at 359.711 kb on + strand, within HGI48_RS01630 at 359.711 kb on + strand, within HGI48_RS01630 at 359.711 kb on + strand, within HGI48_RS01630 at 359.711 kb on + strand, within HGI48_RS01630 at 359.712 kb on - strand, within HGI48_RS01630 at 359.712 kb on - strand, within HGI48_RS01630 at 359.712 kb on - strand, within HGI48_RS01630 at 359.712 kb on - strand, within HGI48_RS01630 at 359.712 kb on - strand at 359.712 kb on - strand, within HGI48_RS01630 at 359.712 kb on - strand at 359.730 kb on + strand, within HGI48_RS01630 at 359.731 kb on - strand, within HGI48_RS01630 at 359.733 kb on + strand, within HGI48_RS01630 at 359.799 kb on + strand, within HGI48_RS01630 at 359.927 kb on + strand, within HGI48_RS01630 at 359.927 kb on + strand, within HGI48_RS01630 at 359.927 kb on + strand, within HGI48_RS01630 at 359.968 kb on - strand, within HGI48_RS01630 at 359.968 kb on - strand, within HGI48_RS01630 at 359.969 kb on + strand, within HGI48_RS01630 at 359.969 kb on + strand, within HGI48_RS01630 at 359.969 kb on + strand, within HGI48_RS01630 at 359.969 kb on + strand, within HGI48_RS01630 at 359.970 kb on - strand, within HGI48_RS01630 at 359.970 kb on - strand, within HGI48_RS01630 at 359.979 kb on + strand, within HGI48_RS01630 at 359.980 kb on - strand, within HGI48_RS01630 at 360.040 kb on + strand, within HGI48_RS01630 at 360.076 kb on - strand, within HGI48_RS01630 at 360.217 kb on + strand at 360.217 kb on + strand at 360.217 kb on + strand at 360.218 kb on - strand at 360.218 kb on - strand at 360.218 kb on - strand at 360.219 kb on + strand at 360.220 kb on - strand at 360.220 kb on - strand at 360.220 kb on - strand at 360.230 kb on + strand at 360.236 kb on + strand at 360.237 kb on - strand at 360.237 kb on - strand at 360.258 kb on + strand at 360.258 kb on + strand at 360.259 kb on - strand at 360.306 kb on + strand at 360.307 kb on - strand at 360.343 kb on + strand at 360.343 kb on + strand at 360.343 kb on + strand at 360.343 kb on + strand at 360.343 kb on + strand at 360.344 kb on - strand at 360.344 kb on - strand at 360.344 kb on - strand at 360.344 kb on - strand at 360.346 kb on + strand at 360.347 kb on - strand at 360.347 kb on - strand at 360.481 kb on - strand at 360.523 kb on + strand, within HGI48_RS01635 at 360.658 kb on - strand, within HGI48_RS01635 at 360.823 kb on + strand, within HGI48_RS01635 at 360.868 kb on + strand, within HGI48_RS01635 at 360.868 kb on + strand, within HGI48_RS01635 at 360.869 kb on - strand, within HGI48_RS01635 at 360.869 kb on - strand, within HGI48_RS01635 at 360.878 kb on + strand, within HGI48_RS01635 at 360.879 kb on - strand, within HGI48_RS01635 at 361.318 kb on + strand, within HGI48_RS01635 at 361.344 kb on + strand, within HGI48_RS01635 at 361.355 kb on - strand, within HGI48_RS01635 at 361.549 kb on + strand, within HGI48_RS01635 at 361.567 kb on - strand, within HGI48_RS01635 at 361.810 kb on + strand at 361.810 kb on + strand at 361.810 kb on + strand at 361.811 kb on - strand at 361.811 kb on - strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.812 kb on + strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.813 kb on - strand at 361.826 kb on - strand at 361.826 kb on - strand at 361.847 kb on + strand at 361.847 kb on + strand at 361.847 kb on + strand at 361.848 kb on - strand at 361.899 kb on + strand at 361.900 kb on - strand at 361.900 kb on - strand at 361.995 kb on - strand at 362.024 kb on - strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.078 kb on - strand at 362.078 kb on - strand at 362.163 kb on - strand at 362.177 kb on + strand at 362.177 kb on + strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.178 kb on - strand at 362.196 kb on - strand at 362.211 kb on - strand at 362.217 kb on - strand at 362.217 kb on - strand at 362.238 kb on - strand at 362.238 kb on - strand at 362.256 kb on + strand, within HGI48_RS01640 at 362.257 kb on - strand, within HGI48_RS01640 at 362.407 kb on + strand, within HGI48_RS01640 at 362.407 kb on + strand, within HGI48_RS01640 at 362.407 kb on + strand, within HGI48_RS01640 at 362.407 kb on + strand, within HGI48_RS01640 at 362.407 kb on + strand, within HGI48_RS01640 at 362.408 kb on - strand at 362.408 kb on - strand at 362.408 kb on - strand, within HGI48_RS01640 at 362.408 kb on - strand, within HGI48_RS01640 at 362.408 kb on - strand, within HGI48_RS01640 at 362.572 kb on - strand, within HGI48_RS01640 at 362.648 kb on + strand, within HGI48_RS01640 at 362.686 kb on + strand, within HGI48_RS01640 at 362.712 kb on + strand, within HGI48_RS01640 at 362.712 kb on + strand at 362.712 kb on + strand, within HGI48_RS01640 at 362.712 kb on + strand, within HGI48_RS01640 at 362.735 kb on + strand, within HGI48_RS01640 at 362.736 kb on - strand, within HGI48_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 359,349 + -0.1 359,395 + +0.2 359,395 + +2.7 359,395 + +0.4 359,395 + +1.1 359,396 - -0.7 359,396 - +0.3 359,502 + +0.6 359,503 - HGI48_RS01630 0.12 -0.9 359,601 + HGI48_RS01630 0.25 -0.4 359,646 + HGI48_RS01630 0.31 -1.4 359,687 + HGI48_RS01630 0.36 -0.7 359,687 + HGI48_RS01630 0.36 +0.2 359,687 + HGI48_RS01630 0.36 +2.2 359,688 - HGI48_RS01630 0.36 -1.1 359,688 - HGI48_RS01630 0.36 +0.2 359,711 + +1.2 359,711 + HGI48_RS01630 0.39 +2.8 359,711 + HGI48_RS01630 0.39 +0.2 359,711 + HGI48_RS01630 0.39 +0.6 359,711 + HGI48_RS01630 0.39 +2.0 359,712 - HGI48_RS01630 0.39 +0.9 359,712 - HGI48_RS01630 0.39 -1.6 359,712 - HGI48_RS01630 0.39 -0.8 359,712 - HGI48_RS01630 0.39 -1.4 359,712 - +3.3 359,712 - HGI48_RS01630 0.39 -0.1 359,712 - +2.6 359,730 + HGI48_RS01630 0.42 -1.1 359,731 - HGI48_RS01630 0.42 -0.1 359,733 + HGI48_RS01630 0.42 -0.1 359,799 + HGI48_RS01630 0.51 -0.4 359,927 + HGI48_RS01630 0.68 -0.8 359,927 + HGI48_RS01630 0.68 +1.0 359,927 + HGI48_RS01630 0.68 -1.2 359,968 - HGI48_RS01630 0.73 -0.1 359,968 - HGI48_RS01630 0.73 -0.1 359,969 + HGI48_RS01630 0.73 -0.8 359,969 + HGI48_RS01630 0.73 -1.1 359,969 + HGI48_RS01630 0.73 +0.2 359,969 + HGI48_RS01630 0.73 -0.6 359,970 - HGI48_RS01630 0.74 -1.9 359,970 - HGI48_RS01630 0.74 +0.6 359,979 + HGI48_RS01630 0.75 +3.7 359,980 - HGI48_RS01630 0.75 -0.6 360,040 + HGI48_RS01630 0.83 -0.8 360,076 - HGI48_RS01630 0.88 +0.1 360,217 + +0.8 360,217 + +1.2 360,217 + -0.4 360,218 - +2.0 360,218 - -0.9 360,218 - +0.4 360,219 + -0.7 360,220 - -1.4 360,220 - +1.6 360,220 - -0.2 360,230 + +0.6 360,236 + -0.2 360,237 - -0.4 360,237 - +1.2 360,258 + +0.9 360,258 + +1.6 360,259 - +1.8 360,306 + -0.4 360,307 - +0.0 360,343 + -0.8 360,343 + -0.3 360,343 + +0.2 360,343 + -1.9 360,343 + -1.8 360,344 - +0.2 360,344 - -0.8 360,344 - +0.1 360,344 - -1.0 360,346 + -0.4 360,347 - +0.5 360,347 - -0.4 360,481 - -0.8 360,523 + HGI48_RS01635 0.13 -2.4 360,658 - HGI48_RS01635 0.22 +1.0 360,823 + HGI48_RS01635 0.34 -4.5 360,868 + HGI48_RS01635 0.37 -1.1 360,868 + HGI48_RS01635 0.37 +0.5 360,869 - HGI48_RS01635 0.37 -1.4 360,869 - HGI48_RS01635 0.37 +0.5 360,878 + HGI48_RS01635 0.38 -0.1 360,879 - HGI48_RS01635 0.38 +0.8 361,318 + HGI48_RS01635 0.69 -1.1 361,344 + HGI48_RS01635 0.71 -0.2 361,355 - HGI48_RS01635 0.71 -2.1 361,549 + HGI48_RS01635 0.85 -0.3 361,567 - HGI48_RS01635 0.86 -1.1 361,810 + -0.9 361,810 + -0.8 361,810 + -1.8 361,811 - -0.4 361,811 - +1.6 361,812 + -0.9 361,812 + +0.2 361,812 + -1.6 361,812 + -0.8 361,812 + -0.6 361,812 + -0.8 361,812 + -0.8 361,813 - -0.8 361,813 - +0.8 361,813 - -0.2 361,813 - +0.6 361,813 - -0.5 361,813 - -0.4 361,813 - -0.2 361,813 - +0.4 361,826 - +1.5 361,826 - +1.1 361,847 + -1.4 361,847 + -0.3 361,847 + -1.4 361,848 - +0.2 361,899 + -1.1 361,900 - +0.2 361,900 - -0.8 361,995 - +4.3 362,024 - +0.5 362,077 + -1.1 362,077 + -0.4 362,078 - +1.2 362,078 - +2.2 362,163 - +0.2 362,177 + +0.7 362,177 + -0.4 362,178 - +0.5 362,178 - +0.2 362,178 - +1.8 362,178 - -0.6 362,178 - -1.1 362,178 - -0.8 362,178 - -1.6 362,196 - -0.6 362,211 - -1.1 362,217 - -1.6 362,217 - -0.4 362,238 - -0.4 362,238 - +2.2 362,256 + HGI48_RS01640 0.12 +0.0 362,257 - HGI48_RS01640 0.12 -0.8 362,407 + HGI48_RS01640 0.36 -1.1 362,407 + HGI48_RS01640 0.36 +0.2 362,407 + HGI48_RS01640 0.36 +0.4 362,407 + HGI48_RS01640 0.36 -0.8 362,407 + HGI48_RS01640 0.36 +0.2 362,408 - +2.2 362,408 - +2.2 362,408 - HGI48_RS01640 0.36 +1.1 362,408 - HGI48_RS01640 0.36 +0.6 362,408 - HGI48_RS01640 0.36 +0.8 362,572 - HGI48_RS01640 0.61 +0.7 362,648 + HGI48_RS01640 0.73 -0.8 362,686 + HGI48_RS01640 0.79 +0.8 362,712 + HGI48_RS01640 0.83 +1.2 362,712 + -0.4 362,712 + HGI48_RS01640 0.83 -0.8 362,712 + HGI48_RS01640 0.83 -1.9 362,735 + HGI48_RS01640 0.87 +0.2 362,736 - HGI48_RS01640 0.87 -0.4
Or see this region's nucleotide sequence