Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01395

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS01385 and HGI48_RS01390 are separated by 337 nucleotidesHGI48_RS01390 and HGI48_RS01395 are separated by 31 nucleotidesHGI48_RS01395 and HGI48_RS01400 are separated by 13 nucleotides HGI48_RS01385: HGI48_RS01385 - HTH-type transcriptional activator AaeR, at 310,574 to 311,518 _RS01385 HGI48_RS01390: HGI48_RS01390 - AaeX family protein, at 311,856 to 312,059 _RS01390 HGI48_RS01395: HGI48_RS01395 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 312,091 to 313,014 _RS01395 HGI48_RS01400: HGI48_RS01400 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 313,028 to 314,977 _RS01400 Position (kb) 312 313 314Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 311.134 kb on + strand, within HGI48_RS01385at 311.134 kb on + strand, within HGI48_RS01385at 311.135 kb on - strand, within HGI48_RS01385at 311.191 kb on + strand, within HGI48_RS01385at 311.191 kb on + strand, within HGI48_RS01385at 311.191 kb on + strand, within HGI48_RS01385at 311.191 kb on + strand, within HGI48_RS01385at 311.191 kb on + strand, within HGI48_RS01385at 311.192 kb on - strand, within HGI48_RS01385at 311.192 kb on - strand, within HGI48_RS01385at 311.195 kb on - strand, within HGI48_RS01385at 311.243 kb on - strand, within HGI48_RS01385at 311.268 kb on + strandat 311.268 kb on + strand, within HGI48_RS01385at 311.268 kb on + strand, within HGI48_RS01385at 311.268 kb on + strand, within HGI48_RS01385at 311.268 kb on + strand, within HGI48_RS01385at 311.268 kb on + strandat 311.268 kb on + strand, within HGI48_RS01385at 311.269 kb on - strand, within HGI48_RS01385at 311.269 kb on - strand, within HGI48_RS01385at 311.269 kb on - strandat 311.269 kb on - strand, within HGI48_RS01385at 311.269 kb on - strandat 311.269 kb on - strand, within HGI48_RS01385at 311.269 kb on - strandat 311.269 kb on - strand, within HGI48_RS01385at 311.270 kb on + strand, within HGI48_RS01385at 311.270 kb on + strand, within HGI48_RS01385at 311.270 kb on + strand, within HGI48_RS01385at 311.271 kb on - strand, within HGI48_RS01385at 311.271 kb on - strand, within HGI48_RS01385at 311.271 kb on - strand, within HGI48_RS01385at 311.271 kb on - strand, within HGI48_RS01385at 311.271 kb on - strand, within HGI48_RS01385at 311.325 kb on + strand, within HGI48_RS01385at 311.325 kb on + strand, within HGI48_RS01385at 311.325 kb on + strand, within HGI48_RS01385at 311.325 kb on + strand, within HGI48_RS01385at 311.325 kb on + strandat 311.387 kb on + strand, within HGI48_RS01385at 311.387 kb on + strand, within HGI48_RS01385at 311.388 kb on - strand, within HGI48_RS01385at 311.388 kb on - strand, within HGI48_RS01385at 311.388 kb on - strand, within HGI48_RS01385at 311.508 kb on - strandat 311.558 kb on + strandat 311.558 kb on + strandat 311.559 kb on - strandat 311.570 kb on + strandat 311.573 kb on + strandat 311.586 kb on + strandat 311.586 kb on + strandat 311.587 kb on - strandat 311.587 kb on - strandat 311.587 kb on - strandat 311.587 kb on - strandat 311.588 kb on + strandat 311.669 kb on + strandat 311.669 kb on + strandat 311.669 kb on + strandat 311.669 kb on + strandat 311.684 kb on + strandat 311.692 kb on - strandat 311.716 kb on - strandat 311.775 kb on - strandat 311.775 kb on - strandat 311.784 kb on + strandat 311.784 kb on + strandat 311.785 kb on - strandat 311.949 kb on - strand, within HGI48_RS01390at 311.976 kb on + strandat 311.976 kb on + strand, within HGI48_RS01390at 311.977 kb on - strand, within HGI48_RS01390at 311.977 kb on - strand, within HGI48_RS01390at 311.977 kb on - strand, within HGI48_RS01390at 311.977 kb on - strandat 311.977 kb on - strand, within HGI48_RS01390at 312.005 kb on + strand, within HGI48_RS01390at 312.006 kb on - strand, within HGI48_RS01390at 312.009 kb on - strand, within HGI48_RS01390at 312.009 kb on - strand, within HGI48_RS01390at 312.033 kb on + strand, within HGI48_RS01390at 312.033 kb on + strand, within HGI48_RS01390at 312.033 kb on + strand, within HGI48_RS01390at 312.034 kb on - strand, within HGI48_RS01390at 312.125 kb on + strandat 312.126 kb on - strandat 312.176 kb on - strandat 312.367 kb on + strand, within HGI48_RS01395at 312.368 kb on - strand, within HGI48_RS01395at 312.370 kb on + strand, within HGI48_RS01395at 312.370 kb on + strand, within HGI48_RS01395at 312.370 kb on + strand, within HGI48_RS01395at 312.544 kb on - strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strandat 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strand, within HGI48_RS01395at 312.590 kb on + strandat 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.591 kb on - strand, within HGI48_RS01395at 312.604 kb on + strand, within HGI48_RS01395at 312.604 kb on + strand, within HGI48_RS01395at 312.605 kb on - strand, within HGI48_RS01395at 312.605 kb on - strand, within HGI48_RS01395at 312.655 kb on + strand, within HGI48_RS01395at 312.655 kb on + strand, within HGI48_RS01395at 312.667 kb on + strand, within HGI48_RS01395at 312.667 kb on + strand, within HGI48_RS01395at 312.667 kb on + strand, within HGI48_RS01395at 312.667 kb on + strand, within HGI48_RS01395at 312.667 kb on + strandat 312.668 kb on - strand, within HGI48_RS01395at 312.668 kb on - strand, within HGI48_RS01395at 312.670 kb on - strand, within HGI48_RS01395at 312.779 kb on + strand, within HGI48_RS01395at 312.949 kb on - strandat 312.949 kb on - strandat 313.082 kb on - strandat 313.158 kb on + strandat 313.256 kb on - strandat 313.360 kb on - strand, within HGI48_RS01400at 313.376 kb on + strand, within HGI48_RS01400at 313.376 kb on + strand, within HGI48_RS01400at 313.376 kb on + strand, within HGI48_RS01400at 313.377 kb on - strand, within HGI48_RS01400at 313.377 kb on - strandat 313.584 kb on - strand, within HGI48_RS01400at 313.605 kb on + strand, within HGI48_RS01400at 313.605 kb on + strand, within HGI48_RS01400at 313.606 kb on - strand, within HGI48_RS01400at 313.606 kb on - strand, within HGI48_RS01400at 313.673 kb on - strand, within HGI48_RS01400at 313.690 kb on - strand, within HGI48_RS01400at 313.768 kb on - strand, within HGI48_RS01400

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
311,134 + HGI48_RS01385 0.59 +0.4
311,134 + HGI48_RS01385 0.59 -0.3
311,135 - HGI48_RS01385 0.59 +0.5
311,191 + HGI48_RS01385 0.65 +1.6
311,191 + HGI48_RS01385 0.65 -0.8
311,191 + HGI48_RS01385 0.65 -0.3
311,191 + HGI48_RS01385 0.65 -2.1
311,191 + HGI48_RS01385 0.65 -0.3
311,192 - HGI48_RS01385 0.65 -0.9
311,192 - HGI48_RS01385 0.65 +0.0
311,195 - HGI48_RS01385 0.66 -1.7
311,243 - HGI48_RS01385 0.71 +1.0
311,268 + -0.3
311,268 + HGI48_RS01385 0.73 -0.8
311,268 + HGI48_RS01385 0.73 +1.2
311,268 + HGI48_RS01385 0.73 +0.0
311,268 + HGI48_RS01385 0.73 -0.8
311,268 + +1.2
311,268 + HGI48_RS01385 0.73 -1.4
311,269 - HGI48_RS01385 0.74 +0.5
311,269 - HGI48_RS01385 0.74 +0.9
311,269 - +1.8
311,269 - HGI48_RS01385 0.74 -1.0
311,269 - -0.3
311,269 - HGI48_RS01385 0.74 -0.3
311,269 - +2.2
311,269 - HGI48_RS01385 0.74 +0.4
311,270 + HGI48_RS01385 0.74 -0.5
311,270 + HGI48_RS01385 0.74 +0.1
311,270 + HGI48_RS01385 0.74 -1.9
311,271 - HGI48_RS01385 0.74 -1.9
311,271 - HGI48_RS01385 0.74 +1.0
311,271 - HGI48_RS01385 0.74 -1.6
311,271 - HGI48_RS01385 0.74 +0.2
311,271 - HGI48_RS01385 0.74 -1.1
311,325 + HGI48_RS01385 0.79 +0.2
311,325 + HGI48_RS01385 0.79 +0.6
311,325 + HGI48_RS01385 0.79 +1.1
311,325 + HGI48_RS01385 0.79 -1.0
311,325 + -0.3
311,387 + HGI48_RS01385 0.86 -0.6
311,387 + HGI48_RS01385 0.86 -0.9
311,388 - HGI48_RS01385 0.86 +1.9
311,388 - HGI48_RS01385 0.86 -0.1
311,388 - HGI48_RS01385 0.86 +0.2
311,508 - -0.2
311,558 + -0.8
311,558 + -2.0
311,559 - +1.2
311,570 + +1.2
311,573 + +0.5
311,586 + +1.2
311,586 + -0.8
311,587 - +0.9
311,587 - -1.0
311,587 - -1.3
311,587 - -1.1
311,588 + -0.2
311,669 + +0.9
311,669 + +0.6
311,669 + -0.3
311,669 + +1.6
311,684 + -0.8
311,692 - +0.2
311,716 - -1.3
311,775 - -1.1
311,775 - -1.3
311,784 + -0.3
311,784 + -1.3
311,785 - +0.2
311,949 - HGI48_RS01390 0.46 -0.9
311,976 + +0.7
311,976 + HGI48_RS01390 0.59 +2.2
311,977 - HGI48_RS01390 0.59 +0.6
311,977 - HGI48_RS01390 0.59 -0.4
311,977 - HGI48_RS01390 0.59 +0.5
311,977 - +0.2
311,977 - HGI48_RS01390 0.59 +1.0
312,005 + HGI48_RS01390 0.73 -1.6
312,006 - HGI48_RS01390 0.74 -0.9
312,009 - HGI48_RS01390 0.75 +0.7
312,009 - HGI48_RS01390 0.75 +0.4
312,033 + HGI48_RS01390 0.87 -2.8
312,033 + HGI48_RS01390 0.87 -0.6
312,033 + HGI48_RS01390 0.87 -1.3
312,034 - HGI48_RS01390 0.87 +0.2
312,125 + +0.3
312,126 - -1.9
312,176 - -0.3
312,367 + HGI48_RS01395 0.30 +0.5
312,368 - HGI48_RS01395 0.30 -1.0
312,370 + HGI48_RS01395 0.30 -1.1
312,370 + HGI48_RS01395 0.30 +1.9
312,370 + HGI48_RS01395 0.30 -0.5
312,544 - HGI48_RS01395 0.49 +2.4
312,590 + HGI48_RS01395 0.54 +1.0
312,590 + HGI48_RS01395 0.54 +1.1
312,590 + HGI48_RS01395 0.54 +1.8
312,590 + HGI48_RS01395 0.54 -1.6
312,590 + HGI48_RS01395 0.54 -0.8
312,590 + HGI48_RS01395 0.54 -0.3
312,590 + +0.7
312,590 + HGI48_RS01395 0.54 -0.8
312,590 + HGI48_RS01395 0.54 -0.8
312,590 + -0.3
312,591 - HGI48_RS01395 0.54 +0.3
312,591 - HGI48_RS01395 0.54 -2.6
312,591 - HGI48_RS01395 0.54 +0.7
312,591 - HGI48_RS01395 0.54 -0.9
312,591 - HGI48_RS01395 0.54 -1.6
312,591 - HGI48_RS01395 0.54 +1.0
312,591 - HGI48_RS01395 0.54 +0.0
312,591 - HGI48_RS01395 0.54 +2.0
312,591 - HGI48_RS01395 0.54 +0.9
312,604 + HGI48_RS01395 0.56 +0.2
312,604 + HGI48_RS01395 0.56 -0.1
312,605 - HGI48_RS01395 0.56 +0.7
312,605 - HGI48_RS01395 0.56 -0.1
312,655 + HGI48_RS01395 0.61 -0.3
312,655 + HGI48_RS01395 0.61 +0.2
312,667 + HGI48_RS01395 0.62 -0.6
312,667 + HGI48_RS01395 0.62 -1.3
312,667 + HGI48_RS01395 0.62 -1.8
312,667 + HGI48_RS01395 0.62 -1.9
312,667 + +1.7
312,668 - HGI48_RS01395 0.62 -1.6
312,668 - HGI48_RS01395 0.62 -0.8
312,670 - HGI48_RS01395 0.63 +0.8
312,779 + HGI48_RS01395 0.74 +1.8
312,949 - -1.1
312,949 - -0.2
313,082 - -0.0
313,158 + +1.3
313,256 - +1.2
313,360 - HGI48_RS01400 0.17 +1.1
313,376 + HGI48_RS01400 0.18 +0.7
313,376 + HGI48_RS01400 0.18 -0.1
313,376 + HGI48_RS01400 0.18 +0.2
313,377 - HGI48_RS01400 0.18 +0.6
313,377 - +0.7
313,584 - HGI48_RS01400 0.29 +1.2
313,605 + HGI48_RS01400 0.30 +0.1
313,605 + HGI48_RS01400 0.30 -1.5
313,606 - HGI48_RS01400 0.30 +0.8
313,606 - HGI48_RS01400 0.30 +0.8
313,673 - HGI48_RS01400 0.33 -0.3
313,690 - HGI48_RS01400 0.34 -0.4
313,768 - HGI48_RS01400 0.38 -0.2

Or see this region's nucleotide sequence