Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01350 and HGI48_RS01355 are separated by 103 nucleotides HGI48_RS01355 and HGI48_RS01360 overlap by 4 nucleotides HGI48_RS01360 and HGI48_RS01365 are separated by 24 nucleotides
HGI48_RS01350: HGI48_RS01350 - rod shape-determining protein MreB, at 300,253 to 301,296
_RS01350
HGI48_RS01355: HGI48_RS01355 - rod shape-determining protein MreC, at 301,400 to 302,512
_RS01355
HGI48_RS01360: HGI48_RS01360 - rod shape-determining protein MreD, at 302,509 to 302,997
_RS01360
HGI48_RS01365: HGI48_RS01365 - septum formation inhibitor Maf, at 303,022 to 303,615
_RS01365
Position (kb) 301
302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 301.295 kb on - strand at 301.347 kb on + strand at 301.347 kb on + strand at 301.347 kb on + strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.348 kb on - strand at 301.376 kb on + strand at 301.377 kb on - strand at 301.389 kb on + strand at 302.353 kb on + strand, within HGI48_RS01355 at 302.353 kb on + strand, within HGI48_RS01355 at 302.428 kb on + strand at 302.514 kb on + strand at 302.514 kb on + strand at 302.514 kb on + strand at 302.514 kb on + strand at 302.514 kb on + strand at 302.514 kb on + strand at 302.996 kb on - strand at 303.009 kb on + strand at 303.034 kb on + strand at 303.034 kb on + strand at 303.034 kb on + strand at 303.034 kb on + strand at 303.035 kb on - strand at 303.151 kb on + strand, within HGI48_RS01365 at 303.151 kb on + strand, within HGI48_RS01365 at 303.151 kb on + strand, within HGI48_RS01365 at 303.151 kb on + strand at 303.151 kb on + strand, within HGI48_RS01365 at 303.151 kb on + strand, within HGI48_RS01365 at 303.151 kb on + strand, within HGI48_RS01365 at 303.152 kb on - strand, within HGI48_RS01365 at 303.152 kb on - strand, within HGI48_RS01365 at 303.152 kb on - strand, within HGI48_RS01365 at 303.294 kb on + strand, within HGI48_RS01365 at 303.392 kb on + strand, within HGI48_RS01365 at 303.423 kb on + strand, within HGI48_RS01365 at 303.423 kb on + strand, within HGI48_RS01365 at 303.424 kb on - strand, within HGI48_RS01365 at 303.424 kb on - strand, within HGI48_RS01365 at 303.430 kb on + strand, within HGI48_RS01365 at 303.430 kb on + strand, within HGI48_RS01365 at 303.430 kb on + strand at 303.430 kb on + strand, within HGI48_RS01365 at 303.430 kb on + strand, within HGI48_RS01365 at 303.430 kb on + strand, within HGI48_RS01365 at 303.430 kb on + strand, within HGI48_RS01365 at 303.430 kb on + strand, within HGI48_RS01365 at 303.430 kb on + strand, within HGI48_RS01365 at 303.430 kb on + strand, within HGI48_RS01365 at 303.430 kb on + strand, within HGI48_RS01365 at 303.430 kb on + strand, within HGI48_RS01365 at 303.431 kb on - strand, within HGI48_RS01365 at 303.431 kb on - strand, within HGI48_RS01365 at 303.431 kb on - strand, within HGI48_RS01365
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 301,295 - -0.3 301,347 + -0.3 301,347 + -0.6 301,347 + -1.1 301,348 - -1.1 301,348 - -0.0 301,348 - -1.3 301,348 - +0.4 301,348 - -1.3 301,348 - +0.8 301,376 + +0.2 301,377 - +0.7 301,389 + -0.6 302,353 + HGI48_RS01355 0.86 +1.1 302,353 + HGI48_RS01355 0.86 +0.0 302,428 + -0.8 302,514 + -2.9 302,514 + -0.9 302,514 + -0.3 302,514 + -1.3 302,514 + +1.2 302,514 + -3.0 302,996 - -0.8 303,009 + -1.3 303,034 + -0.8 303,034 + -0.2 303,034 + -0.8 303,034 + +0.4 303,035 - -0.1 303,151 + HGI48_RS01365 0.22 +1.2 303,151 + HGI48_RS01365 0.22 +0.2 303,151 + HGI48_RS01365 0.22 -2.2 303,151 + +0.2 303,151 + HGI48_RS01365 0.22 -2.7 303,151 + HGI48_RS01365 0.22 -1.1 303,151 + HGI48_RS01365 0.22 -1.8 303,152 - HGI48_RS01365 0.22 -1.2 303,152 - HGI48_RS01365 0.22 -0.3 303,152 - HGI48_RS01365 0.22 +0.2 303,294 + HGI48_RS01365 0.46 +0.0 303,392 + HGI48_RS01365 0.62 +0.9 303,423 + HGI48_RS01365 0.68 -1.7 303,423 + HGI48_RS01365 0.68 -0.3 303,424 - HGI48_RS01365 0.68 +0.6 303,424 - HGI48_RS01365 0.68 +1.0 303,430 + HGI48_RS01365 0.69 -0.8 303,430 + HGI48_RS01365 0.69 -0.7 303,430 + +2.2 303,430 + HGI48_RS01365 0.69 +1.1 303,430 + HGI48_RS01365 0.69 -1.1 303,430 + HGI48_RS01365 0.69 -0.3 303,430 + HGI48_RS01365 0.69 -0.8 303,430 + HGI48_RS01365 0.69 -0.3 303,430 + HGI48_RS01365 0.69 +1.2 303,430 + HGI48_RS01365 0.69 -1.9 303,430 + HGI48_RS01365 0.69 +0.8 303,430 + HGI48_RS01365 0.69 -0.1 303,431 - HGI48_RS01365 0.69 +1.0 303,431 - HGI48_RS01365 0.69 -0.2 303,431 - HGI48_RS01365 0.69 -0.1
Or see this region's nucleotide sequence