Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00085

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00080 and HGI48_RS00085 are separated by 103 nucleotidesHGI48_RS00085 and HGI48_RS00090 are separated by 464 nucleotides HGI48_RS00080: HGI48_RS00080 - hypothetical protein, at 22,311 to 23,525 _RS00080 HGI48_RS00085: HGI48_RS00085 - IS3 family transposase, at 23,629 to 23,754 _RS00085 HGI48_RS00090: HGI48_RS00090 - formyl-CoA transferase, at 24,219 to 25,466 _RS00090 Position (kb) 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 22.699 kb on + strandat 22.730 kb on + strand, within HGI48_RS00080at 22.736 kb on - strand, within HGI48_RS00080at 22.769 kb on + strand, within HGI48_RS00080at 22.770 kb on - strand, within HGI48_RS00080at 22.770 kb on - strand, within HGI48_RS00080at 22.790 kb on - strand, within HGI48_RS00080at 22.828 kb on - strandat 22.828 kb on - strand, within HGI48_RS00080at 22.852 kb on + strand, within HGI48_RS00080at 22.852 kb on + strand, within HGI48_RS00080at 22.852 kb on + strand, within HGI48_RS00080at 22.942 kb on - strand, within HGI48_RS00080at 23.031 kb on - strand, within HGI48_RS00080at 23.051 kb on + strand, within HGI48_RS00080at 23.051 kb on + strandat 23.052 kb on - strand, within HGI48_RS00080at 23.052 kb on - strand, within HGI48_RS00080at 23.089 kb on + strand, within HGI48_RS00080at 23.114 kb on - strand, within HGI48_RS00080at 23.114 kb on - strand, within HGI48_RS00080at 23.114 kb on - strand, within HGI48_RS00080at 23.116 kb on + strand, within HGI48_RS00080at 23.159 kb on + strand, within HGI48_RS00080at 23.181 kb on + strand, within HGI48_RS00080at 23.181 kb on + strand, within HGI48_RS00080at 23.182 kb on - strand, within HGI48_RS00080at 23.190 kb on + strandat 23.191 kb on - strand, within HGI48_RS00080at 23.191 kb on - strand, within HGI48_RS00080at 23.255 kb on + strand, within HGI48_RS00080at 23.264 kb on + strand, within HGI48_RS00080at 23.264 kb on + strand, within HGI48_RS00080at 23.264 kb on + strand, within HGI48_RS00080at 23.305 kb on + strand, within HGI48_RS00080at 23.306 kb on - strand, within HGI48_RS00080at 23.376 kb on + strand, within HGI48_RS00080at 23.376 kb on + strand, within HGI48_RS00080at 23.376 kb on + strand, within HGI48_RS00080at 23.377 kb on - strandat 23.377 kb on - strandat 23.377 kb on - strand, within HGI48_RS00080at 23.377 kb on - strandat 23.396 kb on + strand, within HGI48_RS00080at 23.396 kb on + strand, within HGI48_RS00080at 23.396 kb on + strandat 23.397 kb on - strand, within HGI48_RS00080at 23.397 kb on - strand, within HGI48_RS00080at 23.468 kb on + strandat 23.507 kb on + strandat 23.508 kb on - strandat 23.508 kb on - strandat 23.508 kb on - strandat 23.508 kb on - strandat 23.508 kb on - strandat 23.508 kb on - strandat 23.510 kb on + strandat 23.510 kb on + strandat 23.511 kb on - strandat 23.511 kb on - strandat 23.524 kb on - strandat 23.524 kb on - strandat 23.570 kb on - strandat 23.594 kb on + strandat 23.594 kb on + strandat 23.594 kb on + strandat 23.594 kb on + strandat 23.594 kb on + strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.595 kb on - strandat 23.614 kb on + strandat 23.614 kb on + strandat 23.614 kb on + strandat 23.615 kb on - strandat 23.615 kb on - strandat 23.642 kb on + strand, within HGI48_RS00085at 23.653 kb on - strand, within HGI48_RS00085at 23.750 kb on - strandat 23.865 kb on + strandat 23.926 kb on + strandat 23.927 kb on - strandat 23.927 kb on - strandat 24.038 kb on + strandat 24.038 kb on + strandat 24.038 kb on + strandat 24.039 kb on - strandat 24.039 kb on - strandat 24.039 kb on - strandat 24.039 kb on - strandat 24.039 kb on - strandat 24.039 kb on - strandat 24.348 kb on - strand, within HGI48_RS00090at 24.370 kb on + strand, within HGI48_RS00090at 24.370 kb on + strand, within HGI48_RS00090at 24.371 kb on - strand, within HGI48_RS00090at 24.371 kb on - strand, within HGI48_RS00090at 24.371 kb on - strand, within HGI48_RS00090at 24.371 kb on - strand, within HGI48_RS00090at 24.478 kb on + strand, within HGI48_RS00090at 24.479 kb on - strand, within HGI48_RS00090at 24.479 kb on - strand, within HGI48_RS00090at 24.479 kb on - strand, within HGI48_RS00090at 24.485 kb on + strand, within HGI48_RS00090at 24.664 kb on + strand, within HGI48_RS00090at 24.664 kb on + strand, within HGI48_RS00090at 24.664 kb on + strand, within HGI48_RS00090at 24.664 kb on + strand, within HGI48_RS00090at 24.664 kb on + strandat 24.664 kb on + strand, within HGI48_RS00090at 24.665 kb on - strand, within HGI48_RS00090at 24.665 kb on - strand, within HGI48_RS00090at 24.665 kb on - strand, within HGI48_RS00090at 24.665 kb on - strand, within HGI48_RS00090at 24.665 kb on - strand, within HGI48_RS00090at 24.665 kb on - strand, within HGI48_RS00090at 24.665 kb on - strand, within HGI48_RS00090at 24.665 kb on - strand, within HGI48_RS00090at 24.668 kb on + strand, within HGI48_RS00090at 24.668 kb on + strand, within HGI48_RS00090at 24.668 kb on + strand, within HGI48_RS00090at 24.669 kb on - strand, within HGI48_RS00090at 24.669 kb on - strand, within HGI48_RS00090at 24.669 kb on - strand, within HGI48_RS00090at 24.669 kb on - strand, within HGI48_RS00090at 24.669 kb on - strand, within HGI48_RS00090at 24.669 kb on - strand, within HGI48_RS00090at 24.670 kb on + strand, within HGI48_RS00090at 24.670 kb on + strand, within HGI48_RS00090at 24.670 kb on + strand, within HGI48_RS00090at 24.670 kb on + strand, within HGI48_RS00090at 24.670 kb on + strand, within HGI48_RS00090at 24.670 kb on + strand, within HGI48_RS00090at 24.671 kb on - strand, within HGI48_RS00090

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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22,699 + +0.7
22,730 + HGI48_RS00080 0.34 +0.9
22,736 - HGI48_RS00080 0.35 -2.2
22,769 + HGI48_RS00080 0.38 -0.0
22,770 - HGI48_RS00080 0.38 -0.3
22,770 - HGI48_RS00080 0.38 +0.2
22,790 - HGI48_RS00080 0.39 -0.1
22,828 - +0.2
22,828 - HGI48_RS00080 0.43 -0.8
22,852 + HGI48_RS00080 0.45 -1.8
22,852 + HGI48_RS00080 0.45 -1.1
22,852 + HGI48_RS00080 0.45 -0.9
22,942 - HGI48_RS00080 0.52 +1.4
23,031 - HGI48_RS00080 0.59 +1.1
23,051 + HGI48_RS00080 0.61 -0.8
23,051 + +1.2
23,052 - HGI48_RS00080 0.61 +1.2
23,052 - HGI48_RS00080 0.61 +0.3
23,089 + HGI48_RS00080 0.64 -2.5
23,114 - HGI48_RS00080 0.66 -1.3
23,114 - HGI48_RS00080 0.66 +1.0
23,114 - HGI48_RS00080 0.66 +0.7
23,116 + HGI48_RS00080 0.66 -0.4
23,159 + HGI48_RS00080 0.70 +0.0
23,181 + HGI48_RS00080 0.72 -0.3
23,181 + HGI48_RS00080 0.72 -1.3
23,182 - HGI48_RS00080 0.72 -0.3
23,190 + +1.2
23,191 - HGI48_RS00080 0.72 +0.8
23,191 - HGI48_RS00080 0.72 +0.7
23,255 + HGI48_RS00080 0.78 -0.2
23,264 + HGI48_RS00080 0.78 -0.6
23,264 + HGI48_RS00080 0.78 -0.4
23,264 + HGI48_RS00080 0.78 +0.3
23,305 + HGI48_RS00080 0.82 -0.9
23,306 - HGI48_RS00080 0.82 -0.4
23,376 + HGI48_RS00080 0.88 -0.0
23,376 + HGI48_RS00080 0.88 -1.6
23,376 + HGI48_RS00080 0.88 -0.3
23,377 - +0.2
23,377 - +1.7
23,377 - HGI48_RS00080 0.88 -1.2
23,377 - +0.7
23,396 + HGI48_RS00080 0.89 -1.1
23,396 + HGI48_RS00080 0.89 +1.0
23,396 + +1.8
23,397 - HGI48_RS00080 0.89 -2.2
23,397 - HGI48_RS00080 0.89 +0.4
23,468 + -0.3
23,507 + +1.2
23,508 - -1.0
23,508 - +0.1
23,508 - +1.2
23,508 - +1.5
23,508 - -1.3
23,508 - -1.3
23,510 + +1.6
23,510 + -1.0
23,511 - -1.8
23,511 - +0.1
23,524 - +0.5
23,524 - -0.9
23,570 - -0.3
23,594 + -0.2
23,594 + -0.5
23,594 + -1.6
23,594 + -0.5
23,594 + -0.8
23,595 - -1.8
23,595 - +1.2
23,595 - -1.6
23,595 - -1.3
23,595 - -1.1
23,595 - -0.0
23,595 - -0.3
23,614 + -0.3
23,614 + -0.2
23,614 + +1.0
23,615 - -1.8
23,615 - -0.3
23,642 + HGI48_RS00085 0.10 -0.3
23,653 - HGI48_RS00085 0.19 -0.6
23,750 - +2.2
23,865 + -0.8
23,926 + +0.7
23,927 - +0.0
23,927 - -0.5
24,038 + -0.9
24,038 + +0.9
24,038 + -0.3
24,039 - +0.8
24,039 - -1.9
24,039 - +1.2
24,039 - +0.9
24,039 - -0.8
24,039 - +0.1
24,348 - HGI48_RS00090 0.10 -0.8
24,370 + HGI48_RS00090 0.12 +0.4
24,370 + HGI48_RS00090 0.12 +0.8
24,371 - HGI48_RS00090 0.12 -0.3
24,371 - HGI48_RS00090 0.12 +0.1
24,371 - HGI48_RS00090 0.12 -0.1
24,371 - HGI48_RS00090 0.12 -1.1
24,478 + HGI48_RS00090 0.21 +0.7
24,479 - HGI48_RS00090 0.21 +0.5
24,479 - HGI48_RS00090 0.21 +1.2
24,479 - HGI48_RS00090 0.21 +0.8
24,485 + HGI48_RS00090 0.21 -0.8
24,664 + HGI48_RS00090 0.36 +0.7
24,664 + HGI48_RS00090 0.36 -1.2
24,664 + HGI48_RS00090 0.36 +1.8
24,664 + HGI48_RS00090 0.36 +0.1
24,664 + -0.3
24,664 + HGI48_RS00090 0.36 -2.3
24,665 - HGI48_RS00090 0.36 -0.5
24,665 - HGI48_RS00090 0.36 +0.4
24,665 - HGI48_RS00090 0.36 -0.0
24,665 - HGI48_RS00090 0.36 +0.3
24,665 - HGI48_RS00090 0.36 +0.3
24,665 - HGI48_RS00090 0.36 +0.7
24,665 - HGI48_RS00090 0.36 -1.1
24,665 - HGI48_RS00090 0.36 +0.6
24,668 + HGI48_RS00090 0.36 -3.3
24,668 + HGI48_RS00090 0.36 +1.3
24,668 + HGI48_RS00090 0.36 -0.3
24,669 - HGI48_RS00090 0.36 +3.1
24,669 - HGI48_RS00090 0.36 -2.6
24,669 - HGI48_RS00090 0.36 -0.5
24,669 - HGI48_RS00090 0.36 -1.8
24,669 - HGI48_RS00090 0.36 +0.2
24,669 - HGI48_RS00090 0.36 +0.0
24,670 + HGI48_RS00090 0.36 -0.8
24,670 + HGI48_RS00090 0.36 -1.3
24,670 + HGI48_RS00090 0.36 +0.5
24,670 + HGI48_RS00090 0.36 +2.5
24,670 + HGI48_RS00090 0.36 -2.1
24,670 + HGI48_RS00090 0.36 -1.2
24,671 - HGI48_RS00090 0.36 -0.8

Or see this region's nucleotide sequence