Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19000

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,264,190	+		HGI48_RS18990	0.35	-0.3
4,264,190	+		HGI48_RS18990	0.35	-0.1
4,264,191	-		HGI48_RS18990	0.35	+1.9
4,264,191	-		HGI48_RS18990	0.35	-2.6
4,264,249	+		HGI48_RS18990	0.41	+1.2
4,264,249	+		HGI48_RS18990	0.41	-1.9
4,264,250	-		HGI48_RS18990	0.41	+0.9
4,264,254	-		HGI48_RS18990	0.42	+1.3
4,264,254	-		HGI48_RS18990	0.42	-0.7
4,264,254	-		HGI48_RS18990	0.42	+2.2
4,264,266	+		HGI48_RS18990	0.43	-0.7
4,264,267	-		HGI48_RS18990	0.43	+0.2
4,264,290	+		HGI48_RS18990	0.46	+0.7
4,264,290	+		HGI48_RS18990	0.46	+0.1
4,264,290	+		HGI48_RS18990	0.46	-0.3
4,264,291	-		HGI48_RS18990	0.46	-2.3
4,264,319	-		HGI48_RS18990	0.49	+0.5
4,264,415	+				+1.1
4,264,416	-		HGI48_RS18990	0.59	-0.0
4,264,508	-		HGI48_RS18990	0.69	+0.5
4,264,558	+		HGI48_RS18990	0.74	+0.2
4,264,559	-		HGI48_RS18990	0.74	-1.7
4,264,567	+		HGI48_RS18990	0.75	-1.5
4,264,611	+		HGI48_RS18990	0.80	+0.1
4,264,688	+		HGI48_RS18990	0.88	-1.0
4,264,725	+				-1.9
4,264,746	+				-0.3
4,264,746	+				+2.1
4,264,770	-				-1.3
4,264,909	-		HGI48_RS18995	0.15	-0.4
4,264,910	+		HGI48_RS18995	0.16	+0.1
4,265,230	+				+1.5
4,265,230	+				-1.9
4,265,230	+				+0.6
4,265,230	+				-0.9
4,265,231	-				+1.8
4,265,231	-				+0.6
4,265,231	-				-0.5
4,265,233	-				+1.1
4,265,233	-				+0.5
4,265,233	-				-3.3
4,265,233	-				-0.4
4,265,235	-				+1.1
4,265,336	+		HGI48_RS19000	0.13	-0.3
4,265,336	+		HGI48_RS19000	0.13	-1.7
4,265,336	+		HGI48_RS19000	0.13	-0.3
4,265,336	+		HGI48_RS19000	0.13	-0.9
4,265,336	+		HGI48_RS19000	0.13	+0.6
4,265,337	-		HGI48_RS19000	0.13	-2.3
4,265,337	-		HGI48_RS19000	0.13	-0.9
4,265,337	-		HGI48_RS19000	0.13	-1.5
4,265,337	-		HGI48_RS19000	0.13	-0.7
4,265,337	-		HGI48_RS19000	0.13	-0.5
4,265,337	-		HGI48_RS19000	0.13	+0.2
4,265,337	-				+2.5
4,265,337	-		HGI48_RS19000	0.13	-0.3
4,265,337	-		HGI48_RS19000	0.13	-0.2
4,265,467	+		HGI48_RS19000	0.21	+0.8
4,265,467	+		HGI48_RS19000	0.21	+1.3
4,265,467	+		HGI48_RS19000	0.21	-2.3
4,265,467	+		HGI48_RS19000	0.21	+0.3
4,265,468	-		HGI48_RS19000	0.21	-1.1
4,265,495	+		HGI48_RS19000	0.23	+0.1
4,265,496	-		HGI48_RS19000	0.23	-1.3
4,265,511	+		HGI48_RS19000	0.24	-0.8
4,265,514	+				+2.5
4,265,514	+		HGI48_RS19000	0.24	-1.2
4,265,514	+		HGI48_RS19000	0.24	-0.4
4,265,515	-		HGI48_RS19000	0.25	-1.5
4,265,525	+		HGI48_RS19000	0.25	-1.2
4,265,580	-		HGI48_RS19000	0.29	-1.5
4,265,734	+		HGI48_RS19000	0.39	+0.3
4,265,768	-				+1.5
4,265,772	+		HGI48_RS19000	0.41	-0.2
4,265,772	+		HGI48_RS19000	0.41	+1.3
4,265,777	-		HGI48_RS19000	0.42	-1.3
4,265,780	-		HGI48_RS19000	0.42	+0.4
4,265,788	+		HGI48_RS19000	0.42	+1.3
4,265,929	+		HGI48_RS19000	0.51	+1.3
4,266,050	+		HGI48_RS19000	0.59	-1.8
4,266,050	+		HGI48_RS19000	0.59	+1.7
4,266,087	+		HGI48_RS19000	0.62	-2.4
4,266,123	-		HGI48_RS19000	0.64	-1.7
4,266,123	-		HGI48_RS19000	0.64	-0.1
4,266,160	+		HGI48_RS19000	0.67	+0.1
4,266,207	+		HGI48_RS19000	0.70	-0.0
4,266,211	+		HGI48_RS19000	0.70	+1.1
4,266,211	+		HGI48_RS19000	0.70	-1.7
4,266,212	-		HGI48_RS19000	0.70	-1.5
4,266,212	-		HGI48_RS19000	0.70	-1.7
4,266,214	+		HGI48_RS19000	0.70	+0.2
4,266,214	+		HGI48_RS19000	0.70	-1.7
4,266,215	-		HGI48_RS19000	0.70	-0.8
4,266,215	-				+0.1
4,266,215	-		HGI48_RS19000	0.70	+0.1
4,266,215	-		HGI48_RS19000	0.70	+0.1
4,266,217	-				-0.5
4,266,217	-		HGI48_RS19000	0.70	-0.1
4,266,217	-		HGI48_RS19000	0.70	+0.7
4,266,217	-		HGI48_RS19000	0.70	+0.3
4,266,224	-				+0.1
4,266,226	+		HGI48_RS19000	0.71	-0.9
4,266,227	-		HGI48_RS19000	0.71	+0.2
4,266,307	-		HGI48_RS19000	0.76	-1.7
4,266,317	+		HGI48_RS19000	0.77	+1.3
4,266,317	+		HGI48_RS19000	0.77	+0.2
4,266,317	+		HGI48_RS19000	0.77	+0.2
4,266,317	+		HGI48_RS19000	0.77	-0.0
4,266,317	+		HGI48_RS19000	0.77	+0.8
4,266,317	+				+1.1
4,266,317	+		HGI48_RS19000	0.77	+0.1
4,266,317	+		HGI48_RS19000	0.77	-1.3
4,266,317	+		HGI48_RS19000	0.77	+1.9
4,266,318	-		HGI48_RS19000	0.77	-0.5
4,266,318	-		HGI48_RS19000	0.77	-0.1
4,266,318	-		HGI48_RS19000	0.77	-0.3
4,266,318	-		HGI48_RS19000	0.77	-0.3
4,266,318	-		HGI48_RS19000	0.77	-0.7
4,266,318	-		HGI48_RS19000	0.77	-0.6
4,266,408	+		HGI48_RS19000	0.83	+1.7
4,266,409	-		HGI48_RS19000	0.83	+0.6
4,266,409	-				-0.5
4,266,423	+		HGI48_RS19000	0.84	+1.2
4,266,423	+		HGI48_RS19000	0.84	+0.1
4,266,423	+		HGI48_RS19000	0.84	+0.1
4,266,548	+				+0.8
4,266,548	+				+0.2
4,266,548	+				-0.4
4,266,548	+				-0.9
4,266,548	+				+0.1
4,266,549	-				+0.1
4,266,549	-				+0.5
4,266,549	-				+0.7
4,266,549	-				-2.1
4,266,549	-				-0.2
4,266,549	-				-0.3
4,266,549	-				+0.8
4,266,549	-				+2.3
4,266,549	-				-1.7
4,266,555	+				+0.5
4,266,555	+				-1.3
4,266,555	+				+1.7
4,266,555	+				-2.6
4,266,555	+				+0.1
4,266,555	+				-2.1
4,266,555	+				-0.2
4,266,556	-				+0.2
4,266,556	-				-0.6
4,266,556	-				+1.8
4,266,556	-				-1.5
4,266,556	-				+0.8
4,266,589	+				-1.3
4,266,589	+				-1.7
4,266,600	+				-1.5
4,266,698	-				-0.5
4,266,867	+				-0.5
4,266,867	+				-0.5
4,266,867	+				-2.3
4,266,867	+				-0.4
4,266,867	+				-1.7
4,266,867	+				-0.3
4,266,868	-				-0.2
4,266,868	-				-1.5
4,266,926	-				-0.4
4,266,926	-				+1.1
4,266,979	-				-2.3
4,266,979	-				+0.9
4,266,979	-				+0.0
4,266,979	-				+1.3
4,266,979	-				+0.1
4,266,979	-				-0.3
4,267,032	+				-0.1
4,267,032	+				-0.5
4,267,035	+				-2.1
4,267,035	+				-0.1
4,267,036	-				-1.3
4,267,036	-				-0.3
4,267,295	+				-0.4
4,267,295	+				-1.9
4,267,296	-				-1.9
4,267,296	-				-0.3
4,267,317	+				-1.5
4,267,335	+				-1.5
4,267,335	+				-1.5
4,267,340	+				+2.2
4,267,340	+				+1.1
4,267,340	+				-0.9
4,267,340	+				+0.7
4,267,372	+				-2.2
4,267,372	+				-0.1
4,267,372	+				-2.4
4,267,372	+				+0.0
4,267,372	+				+0.7
4,267,372	+				+0.9
4,267,372	+				+0.5
4,267,372	+				-1.7
4,267,373	-				-0.5
4,267,373	-				-1.7
4,267,373	-				-0.3
4,267,373	-				+0.5
4,267,373	-				-1.0
4,267,373	-				-2.5
4,267,373	-				+0.4
4,267,373	-				-0.1
4,267,381	+				-2.3
4,267,407	+				+0.2
4,267,408	-				+0.4
4,267,479	-				-0.9
4,267,490	-		HGI48_RS19010	0.11	+0.0
4,267,497	+		HGI48_RS19010	0.12	-0.9
4,267,498	-		HGI48_RS19010	0.12	+0.1
4,267,498	-		HGI48_RS19010	0.12	-1.5
4,267,498	-		HGI48_RS19010	0.12	-2.5
4,267,531	-				-0.5
4,267,544	+		HGI48_RS19010	0.17	+0.2
4,267,544	+		HGI48_RS19010	0.17	-1.9
4,267,545	-		HGI48_RS19010	0.17	+1.7
4,267,545	-		HGI48_RS19010	0.17	-0.7
4,267,545	-		HGI48_RS19010	0.17	+0.4
4,267,550	+		HGI48_RS19010	0.18	-0.4
4,267,550	+		HGI48_RS19010	0.18	+0.1
4,267,550	+		HGI48_RS19010	0.18	+1.6
4,267,550	+		HGI48_RS19010	0.18	-0.5
4,267,550	+		HGI48_RS19010	0.18	+0.3
4,267,550	+		HGI48_RS19010	0.18	-1.1
4,267,551	-		HGI48_RS19010	0.18	-2.1
4,267,556	-		HGI48_RS19010	0.18	+0.1
4,267,632	-		HGI48_RS19010	0.27	-0.5
4,267,670	-		HGI48_RS19010	0.31	+0.7