Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18985

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS18975 and HGI48_RS18980 overlap by 8 nucleotidesHGI48_RS18980 and HGI48_RS18985 overlap by 1 nucleotidesHGI48_RS18985 and HGI48_RS18990 are separated by 13 nucleotides HGI48_RS18975: HGI48_RS18975 - thioesterase, at 4,261,543 to 4,262,256 _RS18975 HGI48_RS18980: HGI48_RS18980 - DMT family transporter, at 4,262,249 to 4,263,169 _RS18980 HGI48_RS18985: HGI48_RS18985 - alanyl-tRNA synthetase, at 4,263,169 to 4,263,843 _RS18985 HGI48_RS18990: HGI48_RS18990 - chlorinating enzyme, at 4,263,857 to 4,264,804 _RS18990 Position (kb) 4263 4264Strain fitness (log2 ratio) -2 -1 0 1 2at 4262.257 kb on - strandat 4262.275 kb on + strandat 4262.275 kb on + strandat 4262.275 kb on + strandat 4262.276 kb on - strandat 4262.276 kb on - strandat 4262.276 kb on - strandat 4262.433 kb on + strand, within HGI48_RS18980at 4262.433 kb on + strand, within HGI48_RS18980at 4262.433 kb on + strandat 4262.485 kb on + strand, within HGI48_RS18980at 4262.485 kb on + strand, within HGI48_RS18980at 4262.485 kb on + strand, within HGI48_RS18980at 4262.485 kb on + strand, within HGI48_RS18980at 4262.485 kb on + strand, within HGI48_RS18980at 4262.485 kb on + strand, within HGI48_RS18980at 4262.486 kb on - strand, within HGI48_RS18980at 4262.486 kb on - strand, within HGI48_RS18980at 4262.486 kb on - strand, within HGI48_RS18980at 4262.486 kb on - strand, within HGI48_RS18980at 4262.486 kb on - strand, within HGI48_RS18980at 4262.486 kb on - strand, within HGI48_RS18980at 4262.486 kb on - strand, within HGI48_RS18980at 4262.486 kb on - strand, within HGI48_RS18980at 4262.486 kb on - strand, within HGI48_RS18980at 4262.487 kb on + strand, within HGI48_RS18980at 4262.487 kb on + strand, within HGI48_RS18980at 4262.487 kb on + strand, within HGI48_RS18980at 4262.487 kb on + strand, within HGI48_RS18980at 4262.487 kb on + strandat 4262.551 kb on + strandat 4262.556 kb on - strand, within HGI48_RS18980at 4262.556 kb on - strand, within HGI48_RS18980at 4262.556 kb on - strand, within HGI48_RS18980at 4262.556 kb on - strand, within HGI48_RS18980at 4262.596 kb on + strand, within HGI48_RS18980at 4262.596 kb on + strand, within HGI48_RS18980at 4262.596 kb on + strand, within HGI48_RS18980at 4262.596 kb on + strand, within HGI48_RS18980at 4262.596 kb on + strand, within HGI48_RS18980at 4262.597 kb on - strand, within HGI48_RS18980at 4262.597 kb on - strand, within HGI48_RS18980at 4262.599 kb on + strand, within HGI48_RS18980at 4262.599 kb on + strand, within HGI48_RS18980at 4262.599 kb on + strand, within HGI48_RS18980at 4262.600 kb on - strand, within HGI48_RS18980at 4262.605 kb on + strand, within HGI48_RS18980at 4262.613 kb on + strand, within HGI48_RS18980at 4262.667 kb on - strand, within HGI48_RS18980at 4262.667 kb on - strand, within HGI48_RS18980at 4262.702 kb on - strand, within HGI48_RS18980at 4262.719 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.772 kb on + strand, within HGI48_RS18980at 4262.773 kb on - strand, within HGI48_RS18980at 4262.773 kb on - strand, within HGI48_RS18980at 4262.773 kb on - strand, within HGI48_RS18980at 4262.773 kb on - strand, within HGI48_RS18980at 4262.773 kb on - strand, within HGI48_RS18980at 4262.773 kb on - strand, within HGI48_RS18980at 4262.773 kb on - strand, within HGI48_RS18980at 4262.815 kb on - strand, within HGI48_RS18980at 4262.815 kb on - strand, within HGI48_RS18980at 4262.910 kb on + strand, within HGI48_RS18980at 4262.910 kb on + strand, within HGI48_RS18980at 4262.942 kb on + strand, within HGI48_RS18980at 4262.957 kb on - strand, within HGI48_RS18980at 4262.992 kb on + strand, within HGI48_RS18980at 4262.993 kb on - strand, within HGI48_RS18980at 4262.993 kb on - strandat 4262.993 kb on - strand, within HGI48_RS18980at 4262.993 kb on - strand, within HGI48_RS18980at 4263.075 kb on + strand, within HGI48_RS18980at 4263.075 kb on + strand, within HGI48_RS18980at 4263.075 kb on + strand, within HGI48_RS18980at 4263.076 kb on - strand, within HGI48_RS18980at 4263.076 kb on - strand, within HGI48_RS18980at 4263.107 kb on + strandat 4263.108 kb on - strandat 4263.114 kb on - strandat 4263.126 kb on + strandat 4263.127 kb on - strandat 4263.127 kb on - strandat 4263.147 kb on + strandat 4263.148 kb on - strandat 4263.148 kb on - strandat 4263.163 kb on + strandat 4263.164 kb on - strandat 4263.170 kb on + strandat 4263.170 kb on + strandat 4263.171 kb on - strandat 4263.171 kb on - strandat 4263.229 kb on - strandat 4263.355 kb on - strand, within HGI48_RS18985at 4263.379 kb on + strand, within HGI48_RS18985at 4263.380 kb on - strand, within HGI48_RS18985at 4263.397 kb on + strand, within HGI48_RS18985at 4263.397 kb on + strand, within HGI48_RS18985at 4263.397 kb on + strand, within HGI48_RS18985at 4263.400 kb on - strand, within HGI48_RS18985at 4263.427 kb on + strand, within HGI48_RS18985at 4263.633 kb on - strand, within HGI48_RS18985at 4263.679 kb on - strand, within HGI48_RS18985at 4263.809 kb on + strandat 4263.809 kb on + strandat 4263.809 kb on + strandat 4263.810 kb on - strandat 4263.813 kb on + strandat 4263.813 kb on + strandat 4263.813 kb on + strandat 4263.814 kb on - strandat 4263.878 kb on + strandat 4263.878 kb on + strandat 4263.878 kb on + strandat 4263.878 kb on + strandat 4263.879 kb on - strandat 4263.879 kb on - strandat 4263.879 kb on - strandat 4263.879 kb on - strandat 4263.879 kb on - strandat 4263.889 kb on + strandat 4263.960 kb on + strand, within HGI48_RS18990at 4263.960 kb on + strand, within HGI48_RS18990at 4263.960 kb on + strand, within HGI48_RS18990at 4263.960 kb on + strand, within HGI48_RS18990at 4263.961 kb on - strandat 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.961 kb on - strand, within HGI48_RS18990at 4263.964 kb on + strandat 4263.964 kb on + strand, within HGI48_RS18990at 4263.965 kb on - strand, within HGI48_RS18990at 4263.965 kb on - strand, within HGI48_RS18990at 4263.965 kb on - strand, within HGI48_RS18990at 4263.976 kb on + strand, within HGI48_RS18990at 4263.977 kb on - strand, within HGI48_RS18990at 4264.019 kb on - strand, within HGI48_RS18990at 4264.072 kb on + strandat 4264.190 kb on + strand, within HGI48_RS18990at 4264.190 kb on + strand, within HGI48_RS18990at 4264.191 kb on - strand, within HGI48_RS18990at 4264.191 kb on - strand, within HGI48_RS18990at 4264.249 kb on + strand, within HGI48_RS18990at 4264.249 kb on + strand, within HGI48_RS18990at 4264.250 kb on - strand, within HGI48_RS18990at 4264.254 kb on - strand, within HGI48_RS18990at 4264.254 kb on - strand, within HGI48_RS18990at 4264.254 kb on - strand, within HGI48_RS18990at 4264.266 kb on + strand, within HGI48_RS18990at 4264.267 kb on - strand, within HGI48_RS18990at 4264.290 kb on + strand, within HGI48_RS18990at 4264.290 kb on + strand, within HGI48_RS18990at 4264.290 kb on + strand, within HGI48_RS18990at 4264.291 kb on - strand, within HGI48_RS18990at 4264.319 kb on - strand, within HGI48_RS18990at 4264.415 kb on + strandat 4264.416 kb on - strand, within HGI48_RS18990at 4264.508 kb on - strand, within HGI48_RS18990at 4264.558 kb on + strand, within HGI48_RS18990at 4264.559 kb on - strand, within HGI48_RS18990at 4264.567 kb on + strand, within HGI48_RS18990at 4264.611 kb on + strand, within HGI48_RS18990at 4264.688 kb on + strand, within HGI48_RS18990at 4264.725 kb on + strandat 4264.746 kb on + strandat 4264.746 kb on + strandat 4264.770 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,262,257 - +0.6
4,262,275 + +1.9
4,262,275 + -0.5
4,262,275 + +0.1
4,262,276 - -1.7
4,262,276 - +0.6
4,262,276 - +0.3
4,262,433 + HGI48_RS18980 0.20 +0.7
4,262,433 + HGI48_RS18980 0.20 +0.9
4,262,433 + -0.5
4,262,485 + HGI48_RS18980 0.26 +0.2
4,262,485 + HGI48_RS18980 0.26 +0.6
4,262,485 + HGI48_RS18980 0.26 +0.3
4,262,485 + HGI48_RS18980 0.26 +0.4
4,262,485 + HGI48_RS18980 0.26 -1.1
4,262,485 + HGI48_RS18980 0.26 +0.6
4,262,486 - HGI48_RS18980 0.26 +0.7
4,262,486 - HGI48_RS18980 0.26 +0.6
4,262,486 - HGI48_RS18980 0.26 +0.1
4,262,486 - HGI48_RS18980 0.26 -0.9
4,262,486 - HGI48_RS18980 0.26 -0.1
4,262,486 - HGI48_RS18980 0.26 -0.7
4,262,486 - HGI48_RS18980 0.26 +1.4
4,262,486 - HGI48_RS18980 0.26 +0.5
4,262,486 - HGI48_RS18980 0.26 -0.5
4,262,487 + HGI48_RS18980 0.26 -0.7
4,262,487 + HGI48_RS18980 0.26 +1.9
4,262,487 + HGI48_RS18980 0.26 -2.3
4,262,487 + HGI48_RS18980 0.26 +0.1
4,262,487 + -0.5
4,262,551 + +0.1
4,262,556 - HGI48_RS18980 0.33 -0.2
4,262,556 - HGI48_RS18980 0.33 -2.1
4,262,556 - HGI48_RS18980 0.33 +2.0
4,262,556 - HGI48_RS18980 0.33 +1.4
4,262,596 + HGI48_RS18980 0.38 +1.3
4,262,596 + HGI48_RS18980 0.38 +1.7
4,262,596 + HGI48_RS18980 0.38 -0.2
4,262,596 + HGI48_RS18980 0.38 -0.2
4,262,596 + HGI48_RS18980 0.38 +0.9
4,262,597 - HGI48_RS18980 0.38 +0.5
4,262,597 - HGI48_RS18980 0.38 -2.4
4,262,599 + HGI48_RS18980 0.38 -0.1
4,262,599 + HGI48_RS18980 0.38 -1.9
4,262,599 + HGI48_RS18980 0.38 -1.3
4,262,600 - HGI48_RS18980 0.38 -1.3
4,262,605 + HGI48_RS18980 0.39 +0.6
4,262,613 + HGI48_RS18980 0.40 -1.5
4,262,667 - HGI48_RS18980 0.45 +0.6
4,262,667 - HGI48_RS18980 0.45 -0.4
4,262,702 - HGI48_RS18980 0.49 -0.3
4,262,719 + HGI48_RS18980 0.51 +0.1
4,262,772 + HGI48_RS18980 0.57 +0.1
4,262,772 + HGI48_RS18980 0.57 -0.4
4,262,772 + HGI48_RS18980 0.57 +0.8
4,262,772 + HGI48_RS18980 0.57 +0.7
4,262,772 + HGI48_RS18980 0.57 -0.2
4,262,772 + HGI48_RS18980 0.57 -1.0
4,262,772 + HGI48_RS18980 0.57 -0.9
4,262,772 + HGI48_RS18980 0.57 -2.1
4,262,772 + HGI48_RS18980 0.57 +0.1
4,262,772 + HGI48_RS18980 0.57 +0.0
4,262,772 + HGI48_RS18980 0.57 +1.3
4,262,772 + HGI48_RS18980 0.57 -0.7
4,262,773 - HGI48_RS18980 0.57 +0.1
4,262,773 - HGI48_RS18980 0.57 +1.0
4,262,773 - HGI48_RS18980 0.57 -0.9
4,262,773 - HGI48_RS18980 0.57 -1.5
4,262,773 - HGI48_RS18980 0.57 -0.2
4,262,773 - HGI48_RS18980 0.57 -0.3
4,262,773 - HGI48_RS18980 0.57 -1.6
4,262,815 - HGI48_RS18980 0.61 +1.7
4,262,815 - HGI48_RS18980 0.61 +0.1
4,262,910 + HGI48_RS18980 0.72 -1.4
4,262,910 + HGI48_RS18980 0.72 +1.2
4,262,942 + HGI48_RS18980 0.75 +0.1
4,262,957 - HGI48_RS18980 0.77 +0.2
4,262,992 + HGI48_RS18980 0.81 -0.9
4,262,993 - HGI48_RS18980 0.81 +1.9
4,262,993 - +1.1
4,262,993 - HGI48_RS18980 0.81 -2.1
4,262,993 - HGI48_RS18980 0.81 +0.5
4,263,075 + HGI48_RS18980 0.90 +0.8
4,263,075 + HGI48_RS18980 0.90 +0.4
4,263,075 + HGI48_RS18980 0.90 +0.6
4,263,076 - HGI48_RS18980 0.90 +0.3
4,263,076 - HGI48_RS18980 0.90 +1.7
4,263,107 + +0.4
4,263,108 - -0.9
4,263,114 - -0.9
4,263,126 + -1.5
4,263,127 - +0.5
4,263,127 - +2.1
4,263,147 + -1.5
4,263,148 - -0.5
4,263,148 - +0.8
4,263,163 + +0.4
4,263,164 - +0.0
4,263,170 + -0.9
4,263,170 + +0.2
4,263,171 - +0.4
4,263,171 - -0.7
4,263,229 - -0.5
4,263,355 - HGI48_RS18985 0.28 -0.6
4,263,379 + HGI48_RS18985 0.31 -0.1
4,263,380 - HGI48_RS18985 0.31 +0.2
4,263,397 + HGI48_RS18985 0.34 +0.5
4,263,397 + HGI48_RS18985 0.34 +0.1
4,263,397 + HGI48_RS18985 0.34 -1.3
4,263,400 - HGI48_RS18985 0.34 +0.6
4,263,427 + HGI48_RS18985 0.38 +0.3
4,263,633 - HGI48_RS18985 0.69 +0.7
4,263,679 - HGI48_RS18985 0.76 +0.5
4,263,809 + -1.3
4,263,809 + +1.6
4,263,809 + +0.8
4,263,810 - +0.2
4,263,813 + -2.3
4,263,813 + -0.7
4,263,813 + -0.5
4,263,814 - -1.5
4,263,878 + -1.3
4,263,878 + -0.2
4,263,878 + +0.7
4,263,878 + -1.6
4,263,879 - -0.9
4,263,879 - +1.5
4,263,879 - +0.1
4,263,879 - +1.1
4,263,879 - -1.1
4,263,889 + -1.1
4,263,960 + HGI48_RS18990 0.11 +1.1
4,263,960 + HGI48_RS18990 0.11 -0.9
4,263,960 + HGI48_RS18990 0.11 -1.9
4,263,960 + HGI48_RS18990 0.11 +0.7
4,263,961 - +2.4
4,263,961 - HGI48_RS18990 0.11 -1.7
4,263,961 - HGI48_RS18990 0.11 -0.8
4,263,961 - HGI48_RS18990 0.11 -2.4
4,263,961 - HGI48_RS18990 0.11 +0.4
4,263,961 - HGI48_RS18990 0.11 +0.1
4,263,961 - HGI48_RS18990 0.11 +1.1
4,263,961 - HGI48_RS18990 0.11 -1.3
4,263,964 + +0.5
4,263,964 + HGI48_RS18990 0.11 -0.3
4,263,965 - HGI48_RS18990 0.11 -0.5
4,263,965 - HGI48_RS18990 0.11 +0.1
4,263,965 - HGI48_RS18990 0.11 -0.7
4,263,976 + HGI48_RS18990 0.13 -0.9
4,263,977 - HGI48_RS18990 0.13 +1.9
4,264,019 - HGI48_RS18990 0.17 -1.5
4,264,072 + -0.5
4,264,190 + HGI48_RS18990 0.35 -0.3
4,264,190 + HGI48_RS18990 0.35 -0.1
4,264,191 - HGI48_RS18990 0.35 +1.9
4,264,191 - HGI48_RS18990 0.35 -2.6
4,264,249 + HGI48_RS18990 0.41 +1.2
4,264,249 + HGI48_RS18990 0.41 -1.9
4,264,250 - HGI48_RS18990 0.41 +0.9
4,264,254 - HGI48_RS18990 0.42 +1.3
4,264,254 - HGI48_RS18990 0.42 -0.7
4,264,254 - HGI48_RS18990 0.42 +2.2
4,264,266 + HGI48_RS18990 0.43 -0.7
4,264,267 - HGI48_RS18990 0.43 +0.2
4,264,290 + HGI48_RS18990 0.46 +0.7
4,264,290 + HGI48_RS18990 0.46 +0.1
4,264,290 + HGI48_RS18990 0.46 -0.3
4,264,291 - HGI48_RS18990 0.46 -2.3
4,264,319 - HGI48_RS18990 0.49 +0.5
4,264,415 + +1.1
4,264,416 - HGI48_RS18990 0.59 -0.0
4,264,508 - HGI48_RS18990 0.69 +0.5
4,264,558 + HGI48_RS18990 0.74 +0.2
4,264,559 - HGI48_RS18990 0.74 -1.7
4,264,567 + HGI48_RS18990 0.75 -1.5
4,264,611 + HGI48_RS18990 0.80 +0.1
4,264,688 + HGI48_RS18990 0.88 -1.0
4,264,725 + -1.9
4,264,746 + -0.3
4,264,746 + +2.1
4,264,770 - -1.3

Or see this region's nucleotide sequence