Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18460

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,144,934	+		HGI48_RS18455	0.42	+0.6
4,144,935	-		HGI48_RS18455	0.42	-1.5
4,144,935	-		HGI48_RS18455	0.42	+1.0
4,144,935	-				-0.5
4,144,935	-		HGI48_RS18455	0.42	-1.0
4,144,935	-		HGI48_RS18455	0.42	+0.3
4,144,976	+		HGI48_RS18455	0.45	-0.5
4,144,976	+		HGI48_RS18455	0.45	-1.5
4,144,976	+		HGI48_RS18455	0.45	-0.4
4,144,976	+		HGI48_RS18455	0.45	+0.3
4,144,976	+		HGI48_RS18455	0.45	-0.2
4,144,976	+		HGI48_RS18455	0.45	+0.7
4,144,977	-		HGI48_RS18455	0.45	-1.0
4,144,977	-		HGI48_RS18455	0.45	-1.7
4,145,098	+		HGI48_RS18455	0.55	+0.3
4,145,099	-		HGI48_RS18455	0.55	-3.1
4,145,114	+		HGI48_RS18455	0.57	-1.8
4,145,114	+		HGI48_RS18455	0.57	-1.5
4,145,135	+		HGI48_RS18455	0.58	-1.8
4,145,135	+		HGI48_RS18455	0.58	-0.8
4,145,135	+		HGI48_RS18455	0.58	+0.0
4,145,135	+		HGI48_RS18455	0.58	-1.8
4,145,136	-		HGI48_RS18455	0.58	-1.3
4,145,136	-		HGI48_RS18455	0.58	-0.7
4,145,136	-		HGI48_RS18455	0.58	+1.5
4,145,145	-		HGI48_RS18455	0.59	+0.0
4,145,259	-				+0.0
4,145,269	-		HGI48_RS18455	0.70	-1.3
4,145,295	+		HGI48_RS18455	0.72	-1.8
4,145,320	-		HGI48_RS18455	0.74	+0.8
4,145,325	+		HGI48_RS18455	0.74	+1.3
4,145,325	+		HGI48_RS18455	0.74	+0.0
4,145,325	+		HGI48_RS18455	0.74	-0.2
4,145,325	+		HGI48_RS18455	0.74	-0.0
4,145,325	+		HGI48_RS18455	0.74	-0.4
4,145,325	+		HGI48_RS18455	0.74	+2.0
4,145,326	-		HGI48_RS18455	0.74	+1.2
4,145,326	-		HGI48_RS18455	0.74	-1.0
4,145,326	-		HGI48_RS18455	0.74	-1.0
4,145,326	-		HGI48_RS18455	0.74	-0.3
4,145,326	-		HGI48_RS18455	0.74	-0.3
4,145,326	-				-0.5
4,145,386	+		HGI48_RS18455	0.79	+1.4
4,145,386	+		HGI48_RS18455	0.79	+1.0
4,145,387	-		HGI48_RS18455	0.79	+0.7
4,145,387	-				+0.0
4,145,387	-		HGI48_RS18455	0.79	-1.8
4,145,428	-		HGI48_RS18455	0.83	+0.6
4,145,428	-				+1.5
4,145,484	+		HGI48_RS18455	0.88	+0.0
4,145,484	+		HGI48_RS18455	0.88	+0.6
4,145,484	+		HGI48_RS18455	0.88	+0.2
4,145,485	-				-0.5
4,145,490	+		HGI48_RS18455	0.88	-1.5
4,145,631	+				+1.3
4,145,631	+				-2.0
4,145,631	+				+2.0
4,145,631	+				+1.2
4,145,631	+				+1.2
4,145,631	+				-1.9
4,145,631	+				+0.6
4,145,631	+				-0.5
4,145,631	+				+0.3
4,145,632	-				+0.8
4,145,632	-				-1.8
4,145,632	-				-0.0
4,145,632	-				-2.4
4,145,632	-				+0.9
4,145,632	-				-2.8
4,145,632	-				+0.2
4,145,632	-				+0.9
4,145,632	-				+1.2
4,145,632	-				+1.2
4,145,632	-				-2.1
4,145,633	+				+1.0
4,145,633	+				+0.1
4,145,633	+				+0.0
4,145,633	+				-1.5
4,145,633	+				-0.7
4,145,634	-				-0.4
4,145,634	-				-0.5
4,145,634	-				-1.8
4,145,634	-				+0.2
4,145,634	-				-0.1
4,145,634	-				-2.0
4,145,647	+				+1.2
4,145,704	+				-1.0
4,145,716	+				+1.0
4,145,716	+				+1.0
4,145,716	+				+1.5
4,145,717	-				-1.3
4,145,717	-				-1.5
4,145,717	-				-1.3
4,145,744	+				-1.5
4,145,744	+				-0.7
4,145,745	-				-0.3
4,145,750	-				-1.9
4,145,768	+				-0.1
4,145,768	+				+0.0
4,145,769	-				+0.3
4,145,769	-				-1.2
4,145,840	+				-0.0
4,145,840	+				-1.8
4,145,860	+				+0.5
4,145,872	-				+0.0
4,145,872	-				+0.4
4,145,872	-				-1.3
4,145,889	+				+0.0
4,145,890	-				+0.5
4,145,893	+				+0.1
4,145,893	+				-1.0
4,145,893	+				-2.0
4,145,893	+				-0.5
4,145,893	+				+0.3
4,145,893	+				-0.2
4,145,893	+				-1.5
4,145,893	+				+0.9
4,145,893	+				+1.6
4,145,893	+				+0.5
4,145,893	+				+0.6
4,145,894	-				-0.8
4,145,894	-				-0.3
4,145,894	-				+0.0
4,145,894	-				-1.0
4,145,894	-				+1.4
4,145,894	-				+0.2
4,145,894	-				-0.2
4,145,894	-				+0.0
4,145,894	-				+0.6
4,145,894	-				+0.7
4,145,894	-				+1.0
4,145,901	+				-0.5
4,145,901	+				+0.2
4,145,901	+				+0.1
4,145,902	-				-0.5
4,145,902	-				-0.2
4,145,902	-				+0.8
4,146,015	+				+0.8
4,146,015	+				-0.4
4,146,015	+				+0.6
4,146,015	+				+0.2
4,146,015	+				-1.0
4,146,016	-				-0.3
4,146,016	-				+0.6
4,146,016	-				-1.8
4,146,016	-				-1.5
4,146,016	-				-1.1
4,146,016	-				+0.4
4,146,100	+		HGI48_RS18460	0.11	+1.0
4,146,101	-		HGI48_RS18460	0.12	-1.0
4,146,101	-		HGI48_RS18460	0.12	-1.2
4,146,121	+		HGI48_RS18460	0.13	+0.8
4,146,122	-		HGI48_RS18460	0.13	-0.5
4,146,148	-		HGI48_RS18460	0.14	-1.3
4,146,196	-		HGI48_RS18460	0.16	-0.5
4,146,240	+		HGI48_RS18460	0.19	-1.5
4,146,240	+		HGI48_RS18460	0.19	+1.0
4,146,240	+		HGI48_RS18460	0.19	-1.3
4,146,240	+		HGI48_RS18460	0.19	-0.5
4,146,240	+		HGI48_RS18460	0.19	-0.2
4,146,240	+		HGI48_RS18460	0.19	-0.1
4,146,240	+		HGI48_RS18460	0.19	-1.5
4,146,241	-				+0.5
4,146,241	-		HGI48_RS18460	0.19	-1.0
4,146,241	-		HGI48_RS18460	0.19	+0.1
4,146,241	-		HGI48_RS18460	0.19	-2.8
4,146,241	-		HGI48_RS18460	0.19	+0.8
4,146,241	-		HGI48_RS18460	0.19	+0.3
4,146,241	-				+1.8
4,146,271	+		HGI48_RS18460	0.20	-0.2
4,146,271	+		HGI48_RS18460	0.20	-0.1
4,146,271	+		HGI48_RS18460	0.20	-0.2
4,146,271	+		HGI48_RS18460	0.20	-1.5
4,146,271	+		HGI48_RS18460	0.20	+0.1
4,146,272	-		HGI48_RS18460	0.20	+0.4
4,146,272	-		HGI48_RS18460	0.20	+0.3
4,146,393	+		HGI48_RS18460	0.26	+0.8
4,146,393	+		HGI48_RS18460	0.26	+1.0
4,146,393	+		HGI48_RS18460	0.26	+1.0
4,146,393	+		HGI48_RS18460	0.26	-0.2
4,146,394	-		HGI48_RS18460	0.26	-0.8
4,146,394	-		HGI48_RS18460	0.26	-0.6
4,146,394	-		HGI48_RS18460	0.26	+1.8
4,146,394	-		HGI48_RS18460	0.26	-1.0
4,146,394	-		HGI48_RS18460	0.26	+0.6
4,146,394	-		HGI48_RS18460	0.26	+0.3
4,146,495	+		HGI48_RS18460	0.31	-0.4
4,146,495	+		HGI48_RS18460	0.31	-1.3
4,146,495	+		HGI48_RS18460	0.31	+0.5
4,146,495	+		HGI48_RS18460	0.31	+1.4
4,146,496	-		HGI48_RS18460	0.32	+0.0
4,146,546	+				+2.3
4,146,553	+		HGI48_RS18460	0.34	+0.9
4,146,641	-		HGI48_RS18460	0.39	+0.6
4,146,738	-		HGI48_RS18460	0.44	+0.7
4,146,846	+		HGI48_RS18460	0.49	-0.3
4,146,846	+		HGI48_RS18460	0.49	+0.4
4,146,846	+		HGI48_RS18460	0.49	-1.3
4,146,861	+		HGI48_RS18460	0.50	-1.5
4,146,862	-		HGI48_RS18460	0.50	+0.2
4,146,956	-		HGI48_RS18460	0.55	+1.0
4,146,969	+		HGI48_RS18460	0.55	-3.3
4,147,269	+				+1.8
4,147,269	+				+1.5
4,147,269	+		HGI48_RS18460	0.71	+0.3
4,147,270	-				+0.0
4,147,270	-		HGI48_RS18460	0.71	-1.0
4,147,270	-		HGI48_RS18460	0.71	+0.3
4,147,314	+		HGI48_RS18460	0.73	+0.2
4,147,314	+		HGI48_RS18460	0.73	-1.0
4,147,314	+		HGI48_RS18460	0.73	+0.2
4,147,315	-		HGI48_RS18460	0.73	+1.0
4,147,315	-		HGI48_RS18460	0.73	+1.6
4,147,327	+		HGI48_RS18460	0.74	+0.6
4,147,327	+		HGI48_RS18460	0.74	-1.1
4,147,328	-		HGI48_RS18460	0.74	+0.8
4,147,328	-		HGI48_RS18460	0.74	+0.4
4,147,328	-		HGI48_RS18460	0.74	+1.9
4,147,328	-		HGI48_RS18460	0.74	+0.5
4,147,330	-		HGI48_RS18460	0.74	+0.3
4,147,330	-		HGI48_RS18460	0.74	+1.0
4,147,330	-		HGI48_RS18460	0.74	-1.1
4,147,361	-		HGI48_RS18460	0.75	+0.3
4,147,361	-		HGI48_RS18460	0.75	-1.8
4,147,361	-		HGI48_RS18460	0.75	-1.0
4,147,480	-		HGI48_RS18460	0.81	+1.6
4,147,481	+		HGI48_RS18460	0.81	+0.0
4,147,481	+		HGI48_RS18460	0.81	+1.2
4,147,481	+				+2.4
4,147,482	-		HGI48_RS18460	0.81	+0.2
4,147,482	-		HGI48_RS18460	0.81	+1.5
4,147,655	+				+0.0
4,147,655	+				+1.6
4,147,704	+				+0.1
4,147,705	-				+0.3
4,147,707	+				-1.3
4,147,707	+				+1.0
4,147,708	-				-0.3
4,147,708	-				+0.4
4,147,708	-				+1.0
4,147,708	-				+1.5
4,147,708	-				+0.8
4,147,708	-				-1.8
4,147,732	+				-1.5
4,147,733	-				+2.0
4,147,733	-				+0.0
4,147,734	+				+1.6
4,147,734	+				+0.2
4,147,734	+				-1.3
4,147,734	+				+1.0
4,147,734	+				-1.5
4,147,734	+				+0.4
4,147,734	+				-0.2
4,147,734	+				-2.3
4,147,734	+				-1.1
4,147,734	+				+1.0
4,147,734	+				-1.8
4,147,735	-				+0.0
4,147,735	-				+1.3
4,147,735	-				-1.8
4,147,735	-				+0.4
4,147,735	-				-0.5
4,147,735	-				+1.4
4,147,775	+				-0.5
4,147,776	-				+0.9
4,147,824	+				+0.7
4,147,825	-				+1.3
4,147,825	-				-3.0
4,147,838	-				-0.5
4,147,838	-				+1.8
4,147,881	-		HGI48_RS18465	0.25	+0.6
4,147,960	+		HGI48_RS18465	0.74	-2.3
4,147,961	-		HGI48_RS18465	0.75	+2.0
4,147,963	+		HGI48_RS18465	0.76	+1.8
4,147,963	+		HGI48_RS18465	0.76	-2.0
4,147,963	+		HGI48_RS18465	0.76	-0.8
4,147,963	+		HGI48_RS18465	0.76	+1.7
4,147,963	+		HGI48_RS18465	0.76	+0.3
4,147,963	+		HGI48_RS18465	0.76	-2.3
4,147,963	+		HGI48_RS18465	0.76	-1.8
4,147,964	-		HGI48_RS18465	0.77	-0.5
4,147,964	-		HGI48_RS18465	0.77	-3.0
4,147,976	+		HGI48_RS18465	0.84	+1.7
4,147,977	-		HGI48_RS18465	0.85	-1.5
4,147,977	-				+1.8
4,147,977	-		HGI48_RS18465	0.85	-0.1
4,147,985	+				-1.3
4,147,986	-				-1.8
4,147,986	-				-1.3
4,147,986	-				-1.8
4,147,988	+				-1.5
4,147,988	+				-2.4
4,147,988	+				-1.0
4,147,989	-				+1.5
4,147,994	-				+0.5
4,147,994	-				-1.0
4,147,994	-				-1.5
4,148,218	+		HGI48_RS18470	0.12	+0.5
4,148,239	+		HGI48_RS18470	0.18	-0.3
4,148,240	-		HGI48_RS18470	0.18	-1.5
4,148,240	-		HGI48_RS18470	0.18	-0.3
4,148,277	+		HGI48_RS18470	0.29	-0.8
4,148,278	-		HGI48_RS18470	0.30	-0.5
4,148,416	+		HGI48_RS18470	0.70	-0.5
4,148,416	+		HGI48_RS18470	0.70	+2.0
4,148,416	+		HGI48_RS18470	0.70	-1.3
4,148,416	+		HGI48_RS18470	0.70	-0.8
4,148,417	-		HGI48_RS18470	0.70	+0.9
4,148,418	+		HGI48_RS18470	0.70	+0.2
4,148,419	-		HGI48_RS18470	0.71	-1.0
4,148,419	-		HGI48_RS18470	0.71	-0.8
4,148,419	-		HGI48_RS18470	0.71	-2.0
4,148,419	-				+1.0
4,148,419	-		HGI48_RS18470	0.71	+0.4
4,148,419	-		HGI48_RS18470	0.71	-0.1
4,148,419	-		HGI48_RS18470	0.71	-1.8
4,148,423	-		HGI48_RS18470	0.72	+2.4
4,148,510	-				-1.8
4,148,510	-				-0.4
4,148,510	-				-0.5
4,148,514	+				+1.5
4,148,515	-				-0.0
4,148,515	-				+0.6
4,148,516	+				-1.3
4,148,517	-				+2.0
4,148,517	-				+1.9
4,148,517	-				-1.8
4,148,537	+				-1.3
4,148,617	+				-1.0
4,148,617	+				-1.3
4,148,617	+				+2.0
4,148,617	+				-1.3
4,148,619	+				+0.0