Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08820

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,897,399	+				+2.7
1,897,400	-				+0.3
1,897,400	-				+0.2
1,897,431	+				+1.7
1,897,431	+				-0.4
1,897,432	-				+0.4
1,897,432	-				-1.9
1,897,432	-				+1.0
1,897,432	-				+1.9
1,897,533	-				+0.7
1,897,648	+				+0.8
1,897,681	-		HGI48_RS08815	0.11	-0.7
1,897,681	-		HGI48_RS08815	0.11	-2.3
1,897,703	+		HGI48_RS08815	0.15	+1.1
1,897,747	+		HGI48_RS08815	0.23	-2.1
1,897,747	+		HGI48_RS08815	0.23	-0.7
1,897,757	-		HGI48_RS08815	0.25	+0.1
1,897,759	+		HGI48_RS08815	0.25	-0.1
1,897,794	+		HGI48_RS08815	0.31	+0.3
1,897,795	-				+1.4
1,897,795	-		HGI48_RS08815	0.32	-1.7
1,897,797	+		HGI48_RS08815	0.32	+0.0
1,897,797	+		HGI48_RS08815	0.32	+0.4
1,897,800	+		HGI48_RS08815	0.33	+1.2
1,897,801	-		HGI48_RS08815	0.33	+1.7
1,897,805	+		HGI48_RS08815	0.34	-0.1
1,897,806	-		HGI48_RS08815	0.34	+0.5
1,897,806	-		HGI48_RS08815	0.34	+0.7
1,897,848	-		HGI48_RS08815	0.41	+0.5
1,897,900	-		HGI48_RS08815	0.51	-1.3
1,897,912	-		HGI48_RS08815	0.53	+0.4
1,897,953	+		HGI48_RS08815	0.61	-0.1
1,897,953	+		HGI48_RS08815	0.61	-0.3
1,897,954	-		HGI48_RS08815	0.61	-1.3
1,897,969	+		HGI48_RS08815	0.64	-1.3
1,898,002	+		HGI48_RS08815	0.70	-2.1
1,898,003	-		HGI48_RS08815	0.70	-1.7
1,898,003	-		HGI48_RS08815	0.70	-0.1
1,898,004	+		HGI48_RS08815	0.70	+0.7
1,898,004	+		HGI48_RS08815	0.70	-1.1
1,898,069	+		HGI48_RS08815	0.82	+0.8
1,898,069	+		HGI48_RS08815	0.82	-0.7
1,898,069	+		HGI48_RS08815	0.82	+0.2
1,898,070	-		HGI48_RS08815	0.83	-0.6
1,898,141	-				+0.9
1,898,161	+				-0.1
1,898,161	+				+0.5
1,898,161	+				-3.0
1,898,161	+				-0.3
1,898,162	-				-3.7
1,898,162	-				+0.7
1,898,162	-				-0.0
1,898,293	+				-2.1
1,898,293	+				-0.9
1,898,293	+				+1.1
1,898,293	+				-0.3
1,898,294	-				+2.2
1,898,294	-				+0.7
1,898,295	+				+0.2
1,898,295	+				-0.3
1,898,295	+				+1.7
1,898,296	-				-0.1
1,898,377	+				+2.1
1,898,377	+				-1.1
1,898,377	+				-1.3
1,898,378	-				-0.3
1,898,378	-				-0.2
1,898,378	-				+0.1
1,898,378	-				-0.8
1,898,378	-				-1.3
1,898,378	-				-0.1
1,898,500	+		HGI48_RS08820	0.16	-2.1
1,898,500	+		HGI48_RS08820	0.16	-1.1
1,898,500	+		HGI48_RS08820	0.16	+1.1
1,898,501	-		HGI48_RS08820	0.16	+1.1
1,898,501	-		HGI48_RS08820	0.16	+0.3
1,898,501	-		HGI48_RS08820	0.16	-1.1
1,898,504	+		HGI48_RS08820	0.16	+0.4
1,898,505	-				-0.9
1,898,505	-		HGI48_RS08820	0.16	-0.9
1,898,505	-		HGI48_RS08820	0.16	+0.2
1,898,508	-		HGI48_RS08820	0.17	-0.3
1,898,508	-		HGI48_RS08820	0.17	-0.7
1,898,520	+		HGI48_RS08820	0.18	-1.7
1,898,521	-		HGI48_RS08820	0.18	-2.0
1,898,528	+		HGI48_RS08820	0.19	-1.7
1,898,618	+		HGI48_RS08820	0.28	-0.8
1,898,618	+				+1.7
1,898,661	+				+0.7
1,898,662	-		HGI48_RS08820	0.33	+1.1
1,898,662	-		HGI48_RS08820	0.33	+0.5
1,898,839	-		HGI48_RS08820	0.51	-1.1
1,898,942	+				-0.9
1,898,982	+		HGI48_RS08820	0.66	-2.8
1,898,982	+		HGI48_RS08820	0.66	+0.2
1,898,983	-		HGI48_RS08820	0.66	+0.7
1,899,019	-		HGI48_RS08820	0.70	+0.3
1,899,019	-		HGI48_RS08820	0.70	-0.3
1,899,180	-		HGI48_RS08820	0.87	-2.7
1,899,231	+				+2.5
1,899,232	-				-1.9
1,899,300	+				-3.0
1,899,305	+				-0.1
1,899,306	-				+0.1
1,899,418	+		HGI48_RS08825	0.14	-2.7
1,899,419	-		HGI48_RS08825	0.14	-2.0
1,899,419	-		HGI48_RS08825	0.14	-1.1
1,899,423	+		HGI48_RS08825	0.15	-0.3
1,899,423	+		HGI48_RS08825	0.15	-0.0
1,899,424	-		HGI48_RS08825	0.15	+0.9
1,899,424	-		HGI48_RS08825	0.15	+0.8
1,899,424	-		HGI48_RS08825	0.15	+0.7
1,899,494	-		HGI48_RS08825	0.25	-2.5
1,899,494	-		HGI48_RS08825	0.25	-0.2
1,899,582	+				+2.0
1,899,582	+		HGI48_RS08825	0.38	-1.3
1,899,583	-		HGI48_RS08825	0.38	-0.5
1,899,583	-		HGI48_RS08825	0.38	-0.6
1,899,583	-		HGI48_RS08825	0.38	-0.3
1,899,583	-		HGI48_RS08825	0.38	-1.9
1,899,583	-		HGI48_RS08825	0.38	+0.7
1,899,583	-		HGI48_RS08825	0.38	-0.5
1,899,598	-		HGI48_RS08825	0.40	+0.7
1,899,648	+				-0.3
1,899,648	+		HGI48_RS08825	0.48	-2.7
1,899,686	+		HGI48_RS08825	0.53	-0.9
1,899,687	-		HGI48_RS08825	0.53	-0.1
1,899,699	-		HGI48_RS08825	0.55	+1.1
1,899,790	+		HGI48_RS08825	0.68	-0.2
1,899,790	+		HGI48_RS08825	0.68	-1.5
1,899,977	-				+1.2
1,900,003	+				-2.7
1,900,003	+				+0.1
1,900,003	+				-0.3
1,900,003	+				-0.9
1,900,003	+				-0.9
1,900,003	+				+1.1
1,900,003	+				+0.9
1,900,003	+				-0.8
1,900,003	+				+2.0
1,900,004	-				-1.8
1,900,004	-				-3.0
1,900,004	-				-0.9
1,900,025	+				-0.1
1,900,025	+				-0.3
1,900,025	+				-0.7
1,900,025	+				-0.9
1,900,026	-				-1.8
1,900,026	-				-1.1
1,900,026	-				+2.2
1,900,027	+				-0.5
1,900,027	+				+0.2
1,900,028	-				-0.3
1,900,028	-				-0.1
1,900,028	-				+0.1
1,900,028	-				-0.3
1,900,028	-				+0.0
1,900,028	-				+1.2
1,900,047	+				+1.9
1,900,048	-				-1.3
1,900,068	+				-1.1
1,900,069	-				+1.3
1,900,075	-				+0.6
1,900,075	-				-0.7
1,900,091	+				-1.3
1,900,093	+				+1.9
1,900,093	+				-0.1
1,900,093	+				+0.3
1,900,094	-				-1.0
1,900,094	-				-2.5
1,900,228	-		HGI48_RS08830	0.14	-0.2
1,900,228	-		HGI48_RS08830	0.14	-0.3
1,900,232	-		HGI48_RS08830	0.14	-1.3
1,900,255	+		HGI48_RS08830	0.17	+1.2
1,900,255	+		HGI48_RS08830	0.17	-1.7
1,900,255	+				+1.4
1,900,256	-		HGI48_RS08830	0.17	-0.3