Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08145

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS08140 and HGI48_RS08145 are separated by 205 nucleotidesHGI48_RS08145 and HGI48_RS08150 are separated by 142 nucleotides HGI48_RS08140: HGI48_RS08140 - helix-turn-helix domain-containing protein, at 1,749,600 to 1,750,499 _RS08140 HGI48_RS08145: HGI48_RS08145 - DUF2501 domain-containing protein, at 1,750,705 to 1,751,190 _RS08145 HGI48_RS08150: HGI48_RS08150 - flavin reductase family protein, at 1,751,333 to 1,751,923 _RS08150 Position (kb) 1750 1751 1752Strain fitness (log2 ratio) -2 -1 0 1 2at 1749.739 kb on + strand, within HGI48_RS08140at 1749.739 kb on + strand, within HGI48_RS08140at 1749.774 kb on + strand, within HGI48_RS08140at 1749.775 kb on - strand, within HGI48_RS08140at 1749.775 kb on - strand, within HGI48_RS08140at 1749.776 kb on + strand, within HGI48_RS08140at 1749.776 kb on + strand, within HGI48_RS08140at 1749.844 kb on + strand, within HGI48_RS08140at 1749.851 kb on - strand, within HGI48_RS08140at 1749.882 kb on - strand, within HGI48_RS08140at 1749.888 kb on - strand, within HGI48_RS08140at 1749.894 kb on - strand, within HGI48_RS08140at 1749.925 kb on - strandat 1749.937 kb on + strand, within HGI48_RS08140at 1749.938 kb on - strand, within HGI48_RS08140at 1750.034 kb on + strand, within HGI48_RS08140at 1750.034 kb on + strand, within HGI48_RS08140at 1750.034 kb on + strand, within HGI48_RS08140at 1750.034 kb on + strand, within HGI48_RS08140at 1750.034 kb on + strand, within HGI48_RS08140at 1750.034 kb on + strand, within HGI48_RS08140at 1750.035 kb on - strand, within HGI48_RS08140at 1750.035 kb on - strand, within HGI48_RS08140at 1750.035 kb on - strand, within HGI48_RS08140at 1750.053 kb on - strand, within HGI48_RS08140at 1750.061 kb on + strand, within HGI48_RS08140at 1750.103 kb on - strand, within HGI48_RS08140at 1750.133 kb on + strand, within HGI48_RS08140at 1750.133 kb on + strand, within HGI48_RS08140at 1750.151 kb on + strand, within HGI48_RS08140at 1750.151 kb on + strand, within HGI48_RS08140at 1750.151 kb on + strand, within HGI48_RS08140at 1750.151 kb on + strandat 1750.220 kb on + strandat 1750.220 kb on + strand, within HGI48_RS08140at 1750.221 kb on - strand, within HGI48_RS08140at 1750.224 kb on - strand, within HGI48_RS08140at 1750.239 kb on + strand, within HGI48_RS08140at 1750.332 kb on + strand, within HGI48_RS08140at 1750.333 kb on - strand, within HGI48_RS08140at 1750.357 kb on - strand, within HGI48_RS08140at 1750.357 kb on - strand, within HGI48_RS08140at 1750.365 kb on - strand, within HGI48_RS08140at 1750.365 kb on - strand, within HGI48_RS08140at 1750.383 kb on + strandat 1750.384 kb on - strand, within HGI48_RS08140at 1750.385 kb on + strand, within HGI48_RS08140at 1750.448 kb on - strandat 1750.474 kb on - strandat 1750.474 kb on - strandat 1750.474 kb on - strandat 1750.474 kb on - strandat 1750.476 kb on + strandat 1750.476 kb on + strandat 1750.476 kb on + strandat 1750.476 kb on + strandat 1750.477 kb on - strandat 1750.477 kb on - strandat 1750.477 kb on - strandat 1750.477 kb on - strandat 1750.477 kb on - strandat 1750.478 kb on + strandat 1750.478 kb on + strandat 1750.479 kb on - strandat 1750.479 kb on - strandat 1750.565 kb on + strandat 1750.565 kb on + strandat 1750.566 kb on - strandat 1750.566 kb on - strandat 1750.589 kb on + strandat 1750.662 kb on + strandat 1750.663 kb on - strandat 1750.663 kb on - strandat 1750.664 kb on + strandat 1750.664 kb on + strandat 1750.665 kb on - strandat 1750.665 kb on - strandat 1750.665 kb on - strandat 1750.695 kb on + strandat 1750.695 kb on + strandat 1750.704 kb on + strandat 1750.712 kb on + strandat 1750.768 kb on + strandat 1750.768 kb on + strand, within HGI48_RS08145at 1750.768 kb on + strand, within HGI48_RS08145at 1750.768 kb on + strandat 1750.768 kb on + strand, within HGI48_RS08145at 1750.769 kb on - strand, within HGI48_RS08145at 1750.873 kb on - strandat 1750.873 kb on - strand, within HGI48_RS08145at 1750.933 kb on + strand, within HGI48_RS08145at 1750.933 kb on + strand, within HGI48_RS08145at 1750.933 kb on + strand, within HGI48_RS08145at 1750.934 kb on - strand, within HGI48_RS08145at 1750.934 kb on - strand, within HGI48_RS08145at 1750.934 kb on - strand, within HGI48_RS08145at 1750.999 kb on - strand, within HGI48_RS08145at 1751.044 kb on + strand, within HGI48_RS08145at 1751.045 kb on - strand, within HGI48_RS08145at 1751.045 kb on - strand, within HGI48_RS08145at 1751.045 kb on - strand, within HGI48_RS08145at 1751.045 kb on - strand, within HGI48_RS08145at 1751.046 kb on + strand, within HGI48_RS08145at 1751.046 kb on + strand, within HGI48_RS08145at 1751.047 kb on - strand, within HGI48_RS08145at 1751.047 kb on - strand, within HGI48_RS08145at 1751.047 kb on - strand, within HGI48_RS08145at 1751.073 kb on + strand, within HGI48_RS08145at 1751.074 kb on - strand, within HGI48_RS08145at 1751.074 kb on - strand, within HGI48_RS08145at 1751.104 kb on - strand, within HGI48_RS08145at 1751.116 kb on - strand, within HGI48_RS08145at 1751.162 kb on + strandat 1751.163 kb on - strandat 1751.163 kb on - strandat 1751.260 kb on - strandat 1751.301 kb on + strandat 1751.302 kb on - strandat 1751.347 kb on + strandat 1751.399 kb on + strandat 1751.447 kb on + strand, within HGI48_RS08150at 1751.447 kb on + strand, within HGI48_RS08150at 1751.447 kb on + strand, within HGI48_RS08150at 1751.727 kb on - strand, within HGI48_RS08150at 1751.851 kb on + strand, within HGI48_RS08150at 1751.851 kb on + strand, within HGI48_RS08150at 1751.931 kb on - strandat 1751.940 kb on + strandat 1751.950 kb on + strandat 1751.951 kb on - strandat 1751.951 kb on - strandat 1752.001 kb on - strandat 1752.019 kb on - strandat 1752.151 kb on + strandat 1752.152 kb on - strandat 1752.153 kb on + strandat 1752.153 kb on + strandat 1752.153 kb on + strandat 1752.153 kb on + strandat 1752.154 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,749,739 + HGI48_RS08140 0.15 +2.4
1,749,739 + HGI48_RS08140 0.15 -1.6
1,749,774 + HGI48_RS08140 0.19 -1.3
1,749,775 - HGI48_RS08140 0.19 -2.5
1,749,775 - HGI48_RS08140 0.19 -0.3
1,749,776 + HGI48_RS08140 0.20 -1.3
1,749,776 + HGI48_RS08140 0.20 +0.7
1,749,844 + HGI48_RS08140 0.27 -0.4
1,749,851 - HGI48_RS08140 0.28 +1.5
1,749,882 - HGI48_RS08140 0.31 -2.0
1,749,888 - HGI48_RS08140 0.32 +1.1
1,749,894 - HGI48_RS08140 0.33 +0.4
1,749,925 - -0.9
1,749,937 + HGI48_RS08140 0.37 -1.1
1,749,938 - HGI48_RS08140 0.38 +0.3
1,750,034 + HGI48_RS08140 0.48 +2.0
1,750,034 + HGI48_RS08140 0.48 +0.7
1,750,034 + HGI48_RS08140 0.48 +0.3
1,750,034 + HGI48_RS08140 0.48 +0.3
1,750,034 + HGI48_RS08140 0.48 +0.1
1,750,034 + HGI48_RS08140 0.48 +0.0
1,750,035 - HGI48_RS08140 0.48 -0.4
1,750,035 - HGI48_RS08140 0.48 +1.6
1,750,035 - HGI48_RS08140 0.48 -0.3
1,750,053 - HGI48_RS08140 0.50 -0.1
1,750,061 + HGI48_RS08140 0.51 +0.0
1,750,103 - HGI48_RS08140 0.56 +0.1
1,750,133 + HGI48_RS08140 0.59 -1.1
1,750,133 + HGI48_RS08140 0.59 -1.5
1,750,151 + HGI48_RS08140 0.61 +1.7
1,750,151 + HGI48_RS08140 0.61 -0.3
1,750,151 + HGI48_RS08140 0.61 -0.8
1,750,151 + +0.7
1,750,220 + -0.9
1,750,220 + HGI48_RS08140 0.69 +0.7
1,750,221 - HGI48_RS08140 0.69 -0.5
1,750,224 - HGI48_RS08140 0.69 -1.1
1,750,239 + HGI48_RS08140 0.71 +0.2
1,750,332 + HGI48_RS08140 0.81 +0.2
1,750,333 - HGI48_RS08140 0.81 +0.4
1,750,357 - HGI48_RS08140 0.84 +0.3
1,750,357 - HGI48_RS08140 0.84 -0.5
1,750,365 - HGI48_RS08140 0.85 +0.7
1,750,365 - HGI48_RS08140 0.85 -1.6
1,750,383 + -0.9
1,750,384 - HGI48_RS08140 0.87 -0.4
1,750,385 + HGI48_RS08140 0.87 +1.8
1,750,448 - +0.2
1,750,474 - +0.4
1,750,474 - -0.3
1,750,474 - +1.8
1,750,474 - -1.2
1,750,476 + +1.0
1,750,476 + -1.6
1,750,476 + +0.7
1,750,476 + +0.5
1,750,477 - -1.0
1,750,477 - +1.4
1,750,477 - +0.3
1,750,477 - +1.2
1,750,477 - +2.3
1,750,478 + +1.4
1,750,478 + -1.9
1,750,479 - +0.3
1,750,479 - +0.1
1,750,565 + +0.1
1,750,565 + -0.2
1,750,566 - -1.5
1,750,566 - -2.1
1,750,589 + +0.2
1,750,662 + +1.2
1,750,663 - -1.9
1,750,663 - -0.5
1,750,664 + +2.0
1,750,664 + +1.7
1,750,665 - -0.6
1,750,665 - -0.9
1,750,665 - -1.3
1,750,695 + -0.9
1,750,695 + -0.9
1,750,704 + -0.6
1,750,712 + -0.0
1,750,768 + -0.9
1,750,768 + HGI48_RS08145 0.13 +0.4
1,750,768 + HGI48_RS08145 0.13 +0.2
1,750,768 + +0.1
1,750,768 + HGI48_RS08145 0.13 +0.7
1,750,769 - HGI48_RS08145 0.13 +0.5
1,750,873 - +1.3
1,750,873 - HGI48_RS08145 0.35 +0.4
1,750,933 + HGI48_RS08145 0.47 -2.1
1,750,933 + HGI48_RS08145 0.47 +0.4
1,750,933 + HGI48_RS08145 0.47 +1.1
1,750,934 - HGI48_RS08145 0.47 -0.5
1,750,934 - HGI48_RS08145 0.47 -0.1
1,750,934 - HGI48_RS08145 0.47 -0.9
1,750,999 - HGI48_RS08145 0.60 -0.1
1,751,044 + HGI48_RS08145 0.70 +0.0
1,751,045 - HGI48_RS08145 0.70 +0.3
1,751,045 - HGI48_RS08145 0.70 +0.0
1,751,045 - HGI48_RS08145 0.70 +0.2
1,751,045 - HGI48_RS08145 0.70 +0.2
1,751,046 + HGI48_RS08145 0.70 -0.3
1,751,046 + HGI48_RS08145 0.70 +0.5
1,751,047 - HGI48_RS08145 0.70 +0.9
1,751,047 - HGI48_RS08145 0.70 +0.7
1,751,047 - HGI48_RS08145 0.70 +0.5
1,751,073 + HGI48_RS08145 0.76 +0.0
1,751,074 - HGI48_RS08145 0.76 +1.0
1,751,074 - HGI48_RS08145 0.76 -0.5
1,751,104 - HGI48_RS08145 0.82 +1.3
1,751,116 - HGI48_RS08145 0.85 -0.3
1,751,162 + +0.5
1,751,163 - -0.1
1,751,163 - -0.9
1,751,260 - -0.2
1,751,301 + +0.0
1,751,302 - +1.4
1,751,347 + +1.2
1,751,399 + -0.9
1,751,447 + HGI48_RS08150 0.19 +0.5
1,751,447 + HGI48_RS08150 0.19 -0.1
1,751,447 + HGI48_RS08150 0.19 +0.7
1,751,727 - HGI48_RS08150 0.67 +0.7
1,751,851 + HGI48_RS08150 0.88 -0.3
1,751,851 + HGI48_RS08150 0.88 +0.6
1,751,931 - -0.9
1,751,940 + -0.3
1,751,950 + -1.1
1,751,951 - -0.4
1,751,951 - -2.1
1,752,001 - +0.9
1,752,019 - -0.0
1,752,151 + +0.7
1,752,152 - +1.3
1,752,153 + -0.3
1,752,153 + +0.4
1,752,153 + +1.2
1,752,153 + -1.6
1,752,154 - +0.3

Or see this region's nucleotide sequence