Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04485

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04480 and HGI48_RS04485 are separated by 131 nucleotidesHGI48_RS04485 and HGI48_RS04490 are separated by 13 nucleotides HGI48_RS04480: HGI48_RS04480 - SAM-dependent methyltransferase TehB, at 937,682 to 938,545 _RS04480 HGI48_RS04485: HGI48_RS04485 - NADH:flavorubredoxin reductase NorW, at 938,677 to 939,834 _RS04485 HGI48_RS04490: HGI48_RS04490 - anaerobic nitric oxide reductase flavorubredoxin, at 939,848 to 941,383 _RS04490 Position (kb) 938 939 940Strain fitness (log2 ratio) -2 -1 0 1 2 3at 937.777 kb on - strand, within HGI48_RS04480at 937.801 kb on - strand, within HGI48_RS04480at 937.801 kb on - strand, within HGI48_RS04480at 937.803 kb on + strand, within HGI48_RS04480at 937.804 kb on - strand, within HGI48_RS04480at 937.894 kb on - strand, within HGI48_RS04480at 937.894 kb on - strand, within HGI48_RS04480at 937.921 kb on + strand, within HGI48_RS04480at 937.922 kb on - strand, within HGI48_RS04480at 937.967 kb on + strand, within HGI48_RS04480at 937.967 kb on + strandat 937.967 kb on + strand, within HGI48_RS04480at 937.967 kb on + strand, within HGI48_RS04480at 937.979 kb on + strand, within HGI48_RS04480at 937.979 kb on + strand, within HGI48_RS04480at 937.979 kb on + strand, within HGI48_RS04480at 937.992 kb on + strand, within HGI48_RS04480at 937.993 kb on - strand, within HGI48_RS04480at 938.071 kb on + strand, within HGI48_RS04480at 938.071 kb on + strand, within HGI48_RS04480at 938.072 kb on - strand, within HGI48_RS04480at 938.072 kb on - strand, within HGI48_RS04480at 938.139 kb on + strand, within HGI48_RS04480at 938.150 kb on - strand, within HGI48_RS04480at 938.196 kb on + strand, within HGI48_RS04480at 938.196 kb on + strand, within HGI48_RS04480at 938.196 kb on + strand, within HGI48_RS04480at 938.197 kb on - strandat 938.197 kb on - strand, within HGI48_RS04480at 938.253 kb on + strand, within HGI48_RS04480at 938.254 kb on - strandat 938.254 kb on - strand, within HGI48_RS04480at 938.254 kb on - strand, within HGI48_RS04480at 938.254 kb on - strand, within HGI48_RS04480at 938.256 kb on + strand, within HGI48_RS04480at 938.256 kb on + strandat 938.256 kb on + strand, within HGI48_RS04480at 938.256 kb on + strand, within HGI48_RS04480at 938.257 kb on - strand, within HGI48_RS04480at 938.257 kb on - strand, within HGI48_RS04480at 938.257 kb on - strand, within HGI48_RS04480at 938.257 kb on - strand, within HGI48_RS04480at 938.274 kb on + strandat 938.274 kb on + strand, within HGI48_RS04480at 938.274 kb on + strand, within HGI48_RS04480at 938.274 kb on + strand, within HGI48_RS04480at 938.275 kb on - strand, within HGI48_RS04480at 938.341 kb on + strand, within HGI48_RS04480at 938.341 kb on + strand, within HGI48_RS04480at 938.341 kb on + strand, within HGI48_RS04480at 938.342 kb on - strand, within HGI48_RS04480at 938.342 kb on - strand, within HGI48_RS04480at 938.342 kb on - strand, within HGI48_RS04480at 938.342 kb on - strand, within HGI48_RS04480at 938.342 kb on - strand, within HGI48_RS04480at 938.343 kb on + strand, within HGI48_RS04480at 938.343 kb on + strand, within HGI48_RS04480at 938.343 kb on + strand, within HGI48_RS04480at 938.344 kb on - strand, within HGI48_RS04480at 938.344 kb on - strand, within HGI48_RS04480at 938.344 kb on - strand, within HGI48_RS04480at 938.402 kb on + strand, within HGI48_RS04480at 938.403 kb on - strandat 938.438 kb on + strand, within HGI48_RS04480at 938.524 kb on + strandat 938.524 kb on + strandat 938.525 kb on - strandat 938.525 kb on - strandat 938.526 kb on + strandat 938.527 kb on - strandat 938.546 kb on - strandat 938.566 kb on + strandat 938.567 kb on - strandat 938.568 kb on + strandat 938.569 kb on - strandat 938.569 kb on - strandat 938.569 kb on - strandat 938.574 kb on + strandat 938.575 kb on - strandat 938.575 kb on - strandat 938.575 kb on - strandat 938.579 kb on + strandat 938.579 kb on + strandat 938.579 kb on + strandat 938.579 kb on + strandat 938.580 kb on - strandat 938.583 kb on - strandat 938.583 kb on - strandat 938.612 kb on + strandat 938.616 kb on - strandat 938.616 kb on - strandat 938.618 kb on - strandat 938.678 kb on + strandat 938.678 kb on + strandat 938.678 kb on + strandat 938.678 kb on + strandat 938.678 kb on + strandat 938.678 kb on + strandat 938.679 kb on - strandat 938.679 kb on - strandat 938.679 kb on - strandat 938.679 kb on - strandat 938.827 kb on - strand, within HGI48_RS04485at 938.868 kb on + strand, within HGI48_RS04485at 938.928 kb on + strand, within HGI48_RS04485at 938.928 kb on + strand, within HGI48_RS04485at 938.929 kb on - strand, within HGI48_RS04485at 938.929 kb on - strand, within HGI48_RS04485at 938.937 kb on + strand, within HGI48_RS04485at 938.940 kb on + strand, within HGI48_RS04485at 938.940 kb on + strand, within HGI48_RS04485at 938.940 kb on + strand, within HGI48_RS04485at 938.940 kb on + strand, within HGI48_RS04485at 938.940 kb on + strandat 938.941 kb on - strand, within HGI48_RS04485at 938.941 kb on - strand, within HGI48_RS04485at 938.941 kb on - strand, within HGI48_RS04485at 938.941 kb on - strand, within HGI48_RS04485at 938.941 kb on - strand, within HGI48_RS04485at 938.966 kb on - strand, within HGI48_RS04485at 939.029 kb on + strand, within HGI48_RS04485at 939.029 kb on + strand, within HGI48_RS04485at 939.030 kb on - strand, within HGI48_RS04485at 939.034 kb on - strand, within HGI48_RS04485at 939.114 kb on + strand, within HGI48_RS04485at 939.180 kb on + strand, within HGI48_RS04485at 939.180 kb on + strand, within HGI48_RS04485at 939.181 kb on - strand, within HGI48_RS04485at 939.181 kb on - strand, within HGI48_RS04485at 939.358 kb on - strand, within HGI48_RS04485at 939.397 kb on + strand, within HGI48_RS04485at 939.397 kb on + strand, within HGI48_RS04485at 939.444 kb on - strand, within HGI48_RS04485at 939.543 kb on - strand, within HGI48_RS04485at 939.559 kb on + strand, within HGI48_RS04485at 939.559 kb on + strand, within HGI48_RS04485at 939.560 kb on - strand, within HGI48_RS04485at 939.615 kb on + strand, within HGI48_RS04485at 939.615 kb on + strandat 939.616 kb on - strandat 939.616 kb on - strand, within HGI48_RS04485at 939.616 kb on - strandat 939.616 kb on - strand, within HGI48_RS04485at 939.616 kb on - strand, within HGI48_RS04485at 939.713 kb on + strand, within HGI48_RS04485at 939.713 kb on + strand, within HGI48_RS04485at 939.713 kb on + strand, within HGI48_RS04485at 939.714 kb on - strand, within HGI48_RS04485at 939.714 kb on - strand, within HGI48_RS04485at 939.780 kb on + strandat 939.834 kb on + strandat 939.834 kb on + strandat 939.834 kb on + strandat 939.834 kb on + strandat 939.835 kb on - strandat 939.835 kb on - strandat 939.835 kb on - strandat 939.835 kb on - strandat 939.835 kb on - strandat 939.835 kb on - strandat 939.835 kb on - strandat 939.835 kb on - strandat 939.835 kb on - strandat 939.835 kb on - strandat 939.835 kb on - strandat 939.838 kb on + strandat 939.839 kb on - strandat 939.863 kb on - strandat 939.911 kb on + strandat 939.911 kb on + strandat 939.973 kb on - strandat 940.009 kb on + strand, within HGI48_RS04490at 940.009 kb on + strand, within HGI48_RS04490at 940.009 kb on + strand, within HGI48_RS04490at 940.010 kb on - strand, within HGI48_RS04490at 940.010 kb on - strand, within HGI48_RS04490at 940.282 kb on + strand, within HGI48_RS04490at 940.283 kb on - strand, within HGI48_RS04490at 940.283 kb on - strand, within HGI48_RS04490at 940.347 kb on + strand, within HGI48_RS04490at 940.347 kb on + strand, within HGI48_RS04490at 940.347 kb on + strand, within HGI48_RS04490at 940.347 kb on + strandat 940.348 kb on - strand, within HGI48_RS04490at 940.436 kb on - strand, within HGI48_RS04490at 940.521 kb on + strand, within HGI48_RS04490at 940.522 kb on - strand, within HGI48_RS04490at 940.522 kb on - strand, within HGI48_RS04490at 940.611 kb on + strand, within HGI48_RS04490at 940.611 kb on + strand, within HGI48_RS04490at 940.612 kb on - strand, within HGI48_RS04490at 940.612 kb on - strand, within HGI48_RS04490at 940.638 kb on + strand, within HGI48_RS04490at 940.660 kb on - strand, within HGI48_RS04490at 940.669 kb on + strandat 940.670 kb on - strandat 940.670 kb on - strand, within HGI48_RS04490at 940.803 kb on + strand, within HGI48_RS04490

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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937,777 - HGI48_RS04480 0.11 +0.5
937,801 - HGI48_RS04480 0.14 +0.5
937,801 - HGI48_RS04480 0.14 +0.9
937,803 + HGI48_RS04480 0.14 -1.1
937,804 - HGI48_RS04480 0.14 -0.8
937,894 - HGI48_RS04480 0.25 +0.9
937,894 - HGI48_RS04480 0.25 +0.5
937,921 + HGI48_RS04480 0.28 -1.7
937,922 - HGI48_RS04480 0.28 +1.9
937,967 + HGI48_RS04480 0.33 +1.0
937,967 + +0.9
937,967 + HGI48_RS04480 0.33 -0.1
937,967 + HGI48_RS04480 0.33 +0.6
937,979 + HGI48_RS04480 0.34 -0.2
937,979 + HGI48_RS04480 0.34 +0.9
937,979 + HGI48_RS04480 0.34 +0.3
937,992 + HGI48_RS04480 0.36 +0.4
937,993 - HGI48_RS04480 0.36 +0.2
938,071 + HGI48_RS04480 0.45 +0.2
938,071 + HGI48_RS04480 0.45 +0.3
938,072 - HGI48_RS04480 0.45 -1.4
938,072 - HGI48_RS04480 0.45 -0.0
938,139 + HGI48_RS04480 0.53 -1.4
938,150 - HGI48_RS04480 0.54 +1.0
938,196 + HGI48_RS04480 0.59 -0.3
938,196 + HGI48_RS04480 0.59 -1.7
938,196 + HGI48_RS04480 0.59 +0.9
938,197 - -0.7
938,197 - HGI48_RS04480 0.60 +1.7
938,253 + HGI48_RS04480 0.66 -0.3
938,254 - +0.9
938,254 - HGI48_RS04480 0.66 -1.7
938,254 - HGI48_RS04480 0.66 -0.3
938,254 - HGI48_RS04480 0.66 -0.0
938,256 + HGI48_RS04480 0.66 -1.1
938,256 + +3.2
938,256 + HGI48_RS04480 0.66 +0.9
938,256 + HGI48_RS04480 0.66 -0.6
938,257 - HGI48_RS04480 0.67 +0.4
938,257 - HGI48_RS04480 0.67 -1.9
938,257 - HGI48_RS04480 0.67 +1.1
938,257 - HGI48_RS04480 0.67 +0.6
938,274 + +0.9
938,274 + HGI48_RS04480 0.69 +0.9
938,274 + HGI48_RS04480 0.69 +2.3
938,274 + HGI48_RS04480 0.69 -0.7
938,275 - HGI48_RS04480 0.69 -1.2
938,341 + HGI48_RS04480 0.76 -0.1
938,341 + HGI48_RS04480 0.76 -2.3
938,341 + HGI48_RS04480 0.76 +1.5
938,342 - HGI48_RS04480 0.76 -0.5
938,342 - HGI48_RS04480 0.76 -0.7
938,342 - HGI48_RS04480 0.76 -2.1
938,342 - HGI48_RS04480 0.76 +0.9
938,342 - HGI48_RS04480 0.76 -0.7
938,343 + HGI48_RS04480 0.77 +0.2
938,343 + HGI48_RS04480 0.77 -0.1
938,343 + HGI48_RS04480 0.77 +1.7
938,344 - HGI48_RS04480 0.77 -2.1
938,344 - HGI48_RS04480 0.77 +2.2
938,344 - HGI48_RS04480 0.77 -2.1
938,402 + HGI48_RS04480 0.83 -1.4
938,403 - -0.7
938,438 + HGI48_RS04480 0.88 +1.7
938,524 + -1.4
938,524 + +1.2
938,525 - +1.0
938,525 - -1.4
938,526 + +0.1
938,527 - -0.8
938,546 - +2.5
938,566 + -0.3
938,567 - -0.4
938,568 + +0.7
938,569 - +0.8
938,569 - -1.1
938,569 - -1.3
938,574 + -2.0
938,575 - -1.4
938,575 - +0.0
938,575 - -0.3
938,579 + -1.1
938,579 + -0.7
938,579 + +0.6
938,579 + +0.3
938,580 - +0.3
938,583 - +0.3
938,583 - -0.1
938,612 + -0.1
938,616 - +0.1
938,616 - -0.1
938,618 - -0.7
938,678 + -0.2
938,678 + -1.9
938,678 + +0.1
938,678 + +1.7
938,678 + -0.5
938,678 + -0.3
938,679 - +2.0
938,679 - +0.4
938,679 - +0.9
938,679 - -0.1
938,827 - HGI48_RS04485 0.13 -1.1
938,868 + HGI48_RS04485 0.16 -0.8
938,928 + HGI48_RS04485 0.22 +0.1
938,928 + HGI48_RS04485 0.22 -1.1
938,929 - HGI48_RS04485 0.22 +0.5
938,929 - HGI48_RS04485 0.22 +0.1
938,937 + HGI48_RS04485 0.22 +0.4
938,940 + HGI48_RS04485 0.23 -1.4
938,940 + HGI48_RS04485 0.23 -0.9
938,940 + HGI48_RS04485 0.23 -0.6
938,940 + HGI48_RS04485 0.23 -0.0
938,940 + +0.3
938,941 - HGI48_RS04485 0.23 +0.2
938,941 - HGI48_RS04485 0.23 +0.5
938,941 - HGI48_RS04485 0.23 -0.5
938,941 - HGI48_RS04485 0.23 +0.2
938,941 - HGI48_RS04485 0.23 +0.0
938,966 - HGI48_RS04485 0.25 +0.6
939,029 + HGI48_RS04485 0.30 -0.4
939,029 + HGI48_RS04485 0.30 -1.4
939,030 - HGI48_RS04485 0.30 +0.1
939,034 - HGI48_RS04485 0.31 +0.5
939,114 + HGI48_RS04485 0.38 +0.6
939,180 + HGI48_RS04485 0.43 -2.6
939,180 + HGI48_RS04485 0.43 +1.7
939,181 - HGI48_RS04485 0.44 -0.7
939,181 - HGI48_RS04485 0.44 -2.1
939,358 - HGI48_RS04485 0.59 -1.0
939,397 + HGI48_RS04485 0.62 -1.7
939,397 + HGI48_RS04485 0.62 +0.1
939,444 - HGI48_RS04485 0.66 -2.1
939,543 - HGI48_RS04485 0.75 -0.7
939,559 + HGI48_RS04485 0.76 -0.3
939,559 + HGI48_RS04485 0.76 -0.1
939,560 - HGI48_RS04485 0.76 +0.2
939,615 + HGI48_RS04485 0.81 -1.7
939,615 + -0.7
939,616 - +0.3
939,616 - HGI48_RS04485 0.81 +1.1
939,616 - +2.7
939,616 - HGI48_RS04485 0.81 +0.2
939,616 - HGI48_RS04485 0.81 -0.1
939,713 + HGI48_RS04485 0.89 -0.8
939,713 + HGI48_RS04485 0.89 -1.3
939,713 + HGI48_RS04485 0.89 -0.8
939,714 - HGI48_RS04485 0.90 -0.4
939,714 - HGI48_RS04485 0.90 -1.7
939,780 + -0.8
939,834 + +0.7
939,834 + -0.4
939,834 + +0.3
939,834 + -1.3
939,835 - -0.1
939,835 - +0.3
939,835 - +0.2
939,835 - -1.1
939,835 - -0.7
939,835 - +0.9
939,835 - +1.5
939,835 - +1.9
939,835 - +0.5
939,835 - +0.6
939,835 - +1.9
939,838 + -0.3
939,839 - +0.0
939,863 - -1.9
939,911 + -0.5
939,911 + +0.1
939,973 - +0.5
940,009 + HGI48_RS04490 0.10 -0.4
940,009 + HGI48_RS04490 0.10 +0.6
940,009 + HGI48_RS04490 0.10 -0.1
940,010 - HGI48_RS04490 0.11 -0.3
940,010 - HGI48_RS04490 0.11 +0.3
940,282 + HGI48_RS04490 0.28 -1.1
940,283 - HGI48_RS04490 0.28 -0.1
940,283 - HGI48_RS04490 0.28 +1.0
940,347 + HGI48_RS04490 0.32 +0.5
940,347 + HGI48_RS04490 0.32 +0.8
940,347 + HGI48_RS04490 0.32 -0.3
940,347 + -0.1
940,348 - HGI48_RS04490 0.33 +0.1
940,436 - HGI48_RS04490 0.38 -1.1
940,521 + HGI48_RS04490 0.44 -0.7
940,522 - HGI48_RS04490 0.44 -0.3
940,522 - HGI48_RS04490 0.44 +0.7
940,611 + HGI48_RS04490 0.50 +1.1
940,611 + HGI48_RS04490 0.50 +0.5
940,612 - HGI48_RS04490 0.50 +1.0
940,612 - HGI48_RS04490 0.50 -0.3
940,638 + HGI48_RS04490 0.51 -0.1
940,660 - HGI48_RS04490 0.53 -0.9
940,669 + +3.5
940,670 - +1.3
940,670 - HGI48_RS04490 0.54 +0.7
940,803 + HGI48_RS04490 0.62 -0.2

Or see this region's nucleotide sequence