Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01465

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01455 and HGI48_RS01460 overlap by 23 nucleotidesHGI48_RS01460 and HGI48_RS01465 overlap by 4 nucleotidesHGI48_RS01465 and HGI48_RS01470 are separated by 47 nucleotides HGI48_RS01455: HGI48_RS01455 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 322,899 to 323,477 _RS01455 HGI48_RS01460: HGI48_RS01460 - LPS export ABC transporter periplasmic protein LptC, at 323,455 to 324,024 _RS01460 HGI48_RS01465: HGI48_RS01465 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 324,021 to 324,587 _RS01465 HGI48_RS01470: HGI48_RS01470 - arabinose-5-phosphate isomerase KdsD, at 324,635 to 325,621 _RS01470 Position (kb) 324 325Strain fitness (log2 ratio) -2 -1 0 1 2at 323.489 kb on - strandat 323.615 kb on - strand, within HGI48_RS01460at 324.054 kb on - strandat 324.054 kb on - strandat 324.054 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.072 kb on - strandat 324.125 kb on - strand, within HGI48_RS01465at 324.125 kb on - strand, within HGI48_RS01465at 324.125 kb on - strandat 324.125 kb on - strand, within HGI48_RS01465at 324.125 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.224 kb on - strand, within HGI48_RS01465at 324.255 kb on - strand, within HGI48_RS01465at 324.255 kb on - strand, within HGI48_RS01465at 324.255 kb on - strand, within HGI48_RS01465at 324.255 kb on - strand, within HGI48_RS01465at 324.255 kb on - strand, within HGI48_RS01465at 324.301 kb on + strand, within HGI48_RS01465at 324.302 kb on - strand, within HGI48_RS01465at 324.302 kb on - strand, within HGI48_RS01465at 324.302 kb on - strand, within HGI48_RS01465at 324.303 kb on + strandat 324.303 kb on + strand, within HGI48_RS01465at 324.303 kb on + strand, within HGI48_RS01465at 324.303 kb on + strand, within HGI48_RS01465at 324.303 kb on + strand, within HGI48_RS01465at 324.303 kb on + strandat 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strand, within HGI48_RS01465at 324.304 kb on - strandat 324.405 kb on - strand, within HGI48_RS01465at 324.421 kb on - strand, within HGI48_RS01465at 324.460 kb on + strand, within HGI48_RS01465at 324.460 kb on + strand, within HGI48_RS01465at 324.461 kb on - strand, within HGI48_RS01465at 324.461 kb on - strand, within HGI48_RS01465at 324.461 kb on - strand, within HGI48_RS01465at 324.481 kb on - strand, within HGI48_RS01465at 324.481 kb on - strand, within HGI48_RS01465at 324.481 kb on - strand, within HGI48_RS01465at 324.481 kb on - strandat 324.502 kb on - strand, within HGI48_RS01465at 324.595 kb on + strandat 324.595 kb on + strandat 324.595 kb on + strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.596 kb on - strandat 324.636 kb on + strandat 324.636 kb on + strandat 324.637 kb on - strandat 324.637 kb on - strandat 324.637 kb on - strandat 324.637 kb on - strandat 324.637 kb on - strandat 324.637 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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323,489 - +1.3
323,615 - HGI48_RS01460 0.28 +2.3
324,054 - +2.1
324,054 - +1.5
324,054 - +0.3
324,072 - -1.2
324,072 - -0.5
324,072 - +1.4
324,072 - +0.6
324,072 - +1.0
324,072 - -0.5
324,072 - -0.5
324,125 - HGI48_RS01465 0.18 +0.5
324,125 - HGI48_RS01465 0.18 +1.1
324,125 - +2.1
324,125 - HGI48_RS01465 0.18 -0.1
324,125 - HGI48_RS01465 0.18 +1.1
324,224 - HGI48_RS01465 0.36 +1.7
324,224 - HGI48_RS01465 0.36 +2.3
324,224 - HGI48_RS01465 0.36 -0.5
324,224 - HGI48_RS01465 0.36 +1.3
324,224 - HGI48_RS01465 0.36 +0.4
324,224 - HGI48_RS01465 0.36 +0.5
324,224 - HGI48_RS01465 0.36 +0.8
324,255 - HGI48_RS01465 0.41 +0.1
324,255 - HGI48_RS01465 0.41 -0.4
324,255 - HGI48_RS01465 0.41 +1.7
324,255 - HGI48_RS01465 0.41 -0.9
324,255 - HGI48_RS01465 0.41 -1.2
324,301 + HGI48_RS01465 0.49 -1.1
324,302 - HGI48_RS01465 0.50 +1.5
324,302 - HGI48_RS01465 0.50 -0.1
324,302 - HGI48_RS01465 0.50 +1.3
324,303 + -0.5
324,303 + HGI48_RS01465 0.50 -0.2
324,303 + HGI48_RS01465 0.50 -1.8
324,303 + HGI48_RS01465 0.50 -1.5
324,303 + HGI48_RS01465 0.50 -1.7
324,303 + -0.5
324,304 - HGI48_RS01465 0.50 +2.4
324,304 - HGI48_RS01465 0.50 +1.0
324,304 - HGI48_RS01465 0.50 +1.7
324,304 - HGI48_RS01465 0.50 +1.3
324,304 - HGI48_RS01465 0.50 +0.5
324,304 - HGI48_RS01465 0.50 -2.1
324,304 - HGI48_RS01465 0.50 +1.1
324,304 - HGI48_RS01465 0.50 +0.4
324,304 - HGI48_RS01465 0.50 +1.4
324,304 - HGI48_RS01465 0.50 +1.8
324,304 - HGI48_RS01465 0.50 +1.4
324,304 - HGI48_RS01465 0.50 -0.2
324,304 - HGI48_RS01465 0.50 +0.7
324,304 - HGI48_RS01465 0.50 +1.0
324,304 - HGI48_RS01465 0.50 +2.2
324,304 - HGI48_RS01465 0.50 -1.2
324,304 - HGI48_RS01465 0.50 +1.4
324,304 - HGI48_RS01465 0.50 +1.2
324,304 - HGI48_RS01465 0.50 +0.1
324,304 - HGI48_RS01465 0.50 +0.9
324,304 - HGI48_RS01465 0.50 +2.4
324,304 - HGI48_RS01465 0.50 +1.1
324,304 - HGI48_RS01465 0.50 +1.9
324,304 - HGI48_RS01465 0.50 -0.7
324,304 - +2.4
324,405 - HGI48_RS01465 0.68 -0.3
324,421 - HGI48_RS01465 0.71 +2.5
324,460 + HGI48_RS01465 0.77 -1.7
324,460 + HGI48_RS01465 0.77 +0.2
324,461 - HGI48_RS01465 0.78 +1.9
324,461 - HGI48_RS01465 0.78 -0.3
324,461 - HGI48_RS01465 0.78 -2.7
324,481 - HGI48_RS01465 0.81 +0.7
324,481 - HGI48_RS01465 0.81 +1.3
324,481 - HGI48_RS01465 0.81 +0.3
324,481 - +1.1
324,502 - HGI48_RS01465 0.85 -0.1
324,595 + +0.1
324,595 + +1.9
324,595 + -1.9
324,596 - -0.2
324,596 - +1.9
324,596 - -0.1
324,596 - +1.4
324,596 - -0.8
324,596 - -2.2
324,596 - -1.5
324,596 - +1.7
324,636 + +1.1
324,636 + +0.7
324,637 - -0.0
324,637 - +1.7
324,637 - +1.1
324,637 - +1.5
324,637 - -0.3
324,637 - +1.4

Or see this region's nucleotide sequence