Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00595 and HGI48_RS00600 are separated by 90 nucleotides HGI48_RS00600 and HGI48_RS00605 overlap by 8 nucleotides HGI48_RS00605 and HGI48_RS00610 overlap by 8 nucleotides
HGI48_RS00595: HGI48_RS00595 - hypothetical protein, at 141,866 to 142,630
_RS00595
HGI48_RS00600: HGI48_RS00600 - ABC transporter ATP-binding protein, at 142,721 to 143,434
_RS00600
HGI48_RS00605: HGI48_RS00605 - ABC transporter permease, at 143,427 to 144,647
_RS00605
HGI48_RS00610: HGI48_RS00610 - TolC family protein, at 144,640 to 146,121
_RS00610
Position (kb) 143
144
145 Strain fitness (log2 ratio) -2
-1
0
1
2 at 142.427 kb on - strand, within HGI48_RS00595 at 142.427 kb on - strand, within HGI48_RS00595 at 142.427 kb on - strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.430 kb on + strand, within HGI48_RS00595 at 142.431 kb on - strand, within HGI48_RS00595 at 142.431 kb on - strand, within HGI48_RS00595 at 142.452 kb on - strand, within HGI48_RS00595 at 142.496 kb on + strand, within HGI48_RS00595 at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.674 kb on + strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.675 kb on - strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.678 kb on + strand at 142.679 kb on - strand at 142.679 kb on - strand at 142.679 kb on - strand at 142.689 kb on + strand at 142.690 kb on - strand at 142.755 kb on + strand at 142.756 kb on - strand at 142.756 kb on - strand at 142.803 kb on + strand, within HGI48_RS00600 at 142.815 kb on + strand, within HGI48_RS00600 at 142.844 kb on - strand, within HGI48_RS00600 at 142.891 kb on + strand, within HGI48_RS00600 at 143.085 kb on - strand, within HGI48_RS00600 at 143.092 kb on + strand at 143.092 kb on + strand, within HGI48_RS00600 at 143.093 kb on - strand at 143.296 kb on + strand, within HGI48_RS00600 at 143.297 kb on - strand, within HGI48_RS00600 at 143.336 kb on - strand, within HGI48_RS00600 at 143.344 kb on - strand, within HGI48_RS00600 at 143.377 kb on + strand at 143.377 kb on + strand at 143.377 kb on + strand at 143.377 kb on + strand at 143.378 kb on - strand at 143.413 kb on - strand at 143.413 kb on - strand at 143.533 kb on + strand at 143.533 kb on + strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.534 kb on - strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.537 kb on + strand at 143.538 kb on - strand at 143.538 kb on - strand at 143.611 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.621 kb on + strand, within HGI48_RS00605 at 143.622 kb on - strand, within HGI48_RS00605 at 143.779 kb on + strand, within HGI48_RS00605 at 143.779 kb on + strand, within HGI48_RS00605 at 143.780 kb on - strand, within HGI48_RS00605 at 143.780 kb on - strand, within HGI48_RS00605 at 143.798 kb on + strand at 143.799 kb on - strand, within HGI48_RS00605 at 143.816 kb on + strand, within HGI48_RS00605 at 143.845 kb on + strand, within HGI48_RS00605 at 143.845 kb on + strand, within HGI48_RS00605 at 143.846 kb on - strand, within HGI48_RS00605 at 143.846 kb on - strand, within HGI48_RS00605 at 143.851 kb on + strand, within HGI48_RS00605 at 143.852 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand at 143.878 kb on - strand, within HGI48_RS00605 at 143.878 kb on - strand at 143.878 kb on - strand, within HGI48_RS00605 at 144.107 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.115 kb on + strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.176 kb on - strand, within HGI48_RS00605 at 144.292 kb on + strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.293 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605 at 144.371 kb on - strand, within HGI48_RS00605 at 144.476 kb on - strand, within HGI48_RS00605 at 144.635 kb on - strand at 144.635 kb on - strand at 144.645 kb on + strand at 144.645 kb on + strand at 144.646 kb on - strand at 144.646 kb on - strand at 144.646 kb on - strand at 144.646 kb on - strand at 144.668 kb on + strand at 144.669 kb on - strand at 144.669 kb on - strand at 144.767 kb on + strand at 144.768 kb on - strand at 144.810 kb on + strand, within HGI48_RS00610 at 144.810 kb on + strand, within HGI48_RS00610 at 144.810 kb on + strand, within HGI48_RS00610 at 144.810 kb on + strand, within HGI48_RS00610 at 144.811 kb on - strand, within HGI48_RS00610 at 144.811 kb on - strand, within HGI48_RS00610 at 144.811 kb on - strand, within HGI48_RS00610 at 144.811 kb on - strand, within HGI48_RS00610 at 144.811 kb on - strand, within HGI48_RS00610 at 144.814 kb on + strand, within HGI48_RS00610 at 144.814 kb on + strand, within HGI48_RS00610 at 144.814 kb on + strand, within HGI48_RS00610 at 144.814 kb on + strand, within HGI48_RS00610 at 144.814 kb on + strand, within HGI48_RS00610 at 144.815 kb on - strand, within HGI48_RS00610 at 144.815 kb on - strand, within HGI48_RS00610 at 144.815 kb on - strand, within HGI48_RS00610 at 144.854 kb on - strand, within HGI48_RS00610 at 144.906 kb on + strand, within HGI48_RS00610 at 144.906 kb on + strand, within HGI48_RS00610 at 144.906 kb on + strand, within HGI48_RS00610 at 144.906 kb on + strand, within HGI48_RS00610 at 144.906 kb on + strand, within HGI48_RS00610 at 144.907 kb on - strand, within HGI48_RS00610 at 144.907 kb on - strand, within HGI48_RS00610 at 144.912 kb on + strand at 144.912 kb on + strand, within HGI48_RS00610 at 144.912 kb on + strand, within HGI48_RS00610 at 144.912 kb on + strand, within HGI48_RS00610 at 144.912 kb on + strand at 144.912 kb on + strand, within HGI48_RS00610 at 144.913 kb on - strand, within HGI48_RS00610 at 144.913 kb on - strand, within HGI48_RS00610 at 144.913 kb on - strand, within HGI48_RS00610 at 144.913 kb on - strand, within HGI48_RS00610 at 144.913 kb on - strand, within HGI48_RS00610 at 144.935 kb on - strand, within HGI48_RS00610 at 144.935 kb on - strand, within HGI48_RS00610 at 144.975 kb on + strand, within HGI48_RS00610 at 145.014 kb on + strand, within HGI48_RS00610 at 145.015 kb on - strand at 145.039 kb on + strand, within HGI48_RS00610 at 145.040 kb on - strand, within HGI48_RS00610 at 145.047 kb on + strand, within HGI48_RS00610 at 145.047 kb on + strand at 145.047 kb on + strand, within HGI48_RS00610 at 145.047 kb on + strand, within HGI48_RS00610 at 145.048 kb on - strand, within HGI48_RS00610 at 145.048 kb on - strand, within HGI48_RS00610 at 145.048 kb on - strand, within HGI48_RS00610 at 145.048 kb on - strand, within HGI48_RS00610 at 145.048 kb on - strand, within HGI48_RS00610 at 145.182 kb on + strand, within HGI48_RS00610 at 145.183 kb on - strand, within HGI48_RS00610 at 145.183 kb on - strand, within HGI48_RS00610 at 145.200 kb on + strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.216 kb on - strand, within HGI48_RS00610 at 145.227 kb on - strand, within HGI48_RS00610 at 145.227 kb on - strand, within HGI48_RS00610 at 145.402 kb on + strand, within HGI48_RS00610 at 145.402 kb on + strand, within HGI48_RS00610 at 145.445 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.448 kb on + strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.449 kb on - strand, within HGI48_RS00610 at 145.567 kb on + strand, within HGI48_RS00610 at 145.567 kb on + strand, within HGI48_RS00610 at 145.567 kb on + strand at 145.568 kb on - strand at 145.568 kb on - strand at 145.605 kb on - strand, within HGI48_RS00610 at 145.605 kb on - strand, within HGI48_RS00610 at 145.623 kb on + strand, within HGI48_RS00610 at 145.624 kb on - strand, within HGI48_RS00610 at 145.624 kb on - strand, within HGI48_RS00610
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 142,427 - HGI48_RS00595 0.73 -0.9 142,427 - HGI48_RS00595 0.73 -2.2 142,427 - HGI48_RS00595 0.73 -1.5 142,430 + HGI48_RS00595 0.74 +1.1 142,430 + HGI48_RS00595 0.74 -0.8 142,430 + HGI48_RS00595 0.74 -0.3 142,431 - HGI48_RS00595 0.74 +0.6 142,431 - HGI48_RS00595 0.74 -0.5 142,452 - HGI48_RS00595 0.77 -1.0 142,496 + HGI48_RS00595 0.82 +1.1 142,674 + +1.1 142,674 + +1.5 142,674 + -0.6 142,674 + -0.5 142,674 + -1.2 142,675 - +0.7 142,675 - +0.3 142,675 - -0.5 142,675 - +0.2 142,675 - -0.5 142,675 - -0.5 142,678 + +1.0 142,678 + +0.4 142,678 + -0.3 142,678 + -0.9 142,679 - +0.3 142,679 - -0.5 142,679 - +0.1 142,689 + +0.3 142,690 - -1.3 142,755 + -1.2 142,756 - +0.2 142,756 - -1.5 142,803 + HGI48_RS00600 0.11 +0.4 142,815 + HGI48_RS00600 0.13 +0.1 142,844 - HGI48_RS00600 0.17 -0.1 142,891 + HGI48_RS00600 0.24 -1.5 143,085 - HGI48_RS00600 0.51 +0.7 143,092 + -0.5 143,092 + HGI48_RS00600 0.52 -0.9 143,093 - +1.1 143,296 + HGI48_RS00600 0.81 +0.0 143,297 - HGI48_RS00600 0.81 +0.4 143,336 - HGI48_RS00600 0.86 +0.7 143,344 - HGI48_RS00600 0.87 -0.3 143,377 + -1.5 143,377 + +0.1 143,377 + -0.3 143,377 + +0.9 143,378 - -1.5 143,413 - -0.6 143,413 - -0.2 143,533 + +0.0 143,533 + +0.9 143,534 - -0.3 143,534 - -0.7 143,534 - +0.1 143,534 - -0.5 143,534 - +0.6 143,537 + -0.5 143,537 + -0.3 143,537 + +1.1 143,537 + -0.9 143,537 + -1.7 143,538 - +1.1 143,538 - -0.5 143,611 + HGI48_RS00605 0.15 +0.1 143,621 + HGI48_RS00605 0.16 +1.1 143,621 + HGI48_RS00605 0.16 +0.1 143,621 + HGI48_RS00605 0.16 +0.6 143,621 + HGI48_RS00605 0.16 -0.9 143,621 + HGI48_RS00605 0.16 -0.5 143,621 + HGI48_RS00605 0.16 -0.2 143,622 - HGI48_RS00605 0.16 +1.1 143,779 + HGI48_RS00605 0.29 -0.9 143,779 + HGI48_RS00605 0.29 -0.8 143,780 - HGI48_RS00605 0.29 +0.4 143,780 - HGI48_RS00605 0.29 +1.3 143,798 + -0.5 143,799 - HGI48_RS00605 0.30 +1.3 143,816 + HGI48_RS00605 0.32 -0.5 143,845 + HGI48_RS00605 0.34 +0.1 143,845 + HGI48_RS00605 0.34 +0.1 143,846 - HGI48_RS00605 0.34 -0.3 143,846 - HGI48_RS00605 0.34 +0.8 143,851 + HGI48_RS00605 0.35 -0.7 143,852 - HGI48_RS00605 0.35 +0.2 143,878 - HGI48_RS00605 0.37 -0.3 143,878 - +1.9 143,878 - HGI48_RS00605 0.37 -2.2 143,878 - -0.5 143,878 - HGI48_RS00605 0.37 -0.8 144,107 + HGI48_RS00605 0.56 +0.8 144,115 + HGI48_RS00605 0.56 -0.0 144,115 + HGI48_RS00605 0.56 -1.2 144,115 + HGI48_RS00605 0.56 -1.1 144,115 + HGI48_RS00605 0.56 -0.4 144,115 + HGI48_RS00605 0.56 -1.6 144,115 + HGI48_RS00605 0.56 -0.9 144,176 - HGI48_RS00605 0.61 -0.7 144,176 - HGI48_RS00605 0.61 -1.5 144,176 - HGI48_RS00605 0.61 +0.6 144,176 - HGI48_RS00605 0.61 +0.8 144,292 + HGI48_RS00605 0.71 -0.6 144,293 - HGI48_RS00605 0.71 -2.0 144,293 - HGI48_RS00605 0.71 +0.7 144,293 - HGI48_RS00605 0.71 +1.5 144,293 - HGI48_RS00605 0.71 -0.5 144,371 - HGI48_RS00605 0.77 -0.2 144,371 - HGI48_RS00605 0.77 +1.3 144,371 - HGI48_RS00605 0.77 -2.0 144,476 - HGI48_RS00605 0.86 +0.5 144,635 - +0.5 144,635 - -0.2 144,645 + -1.0 144,645 + +1.5 144,646 - +0.1 144,646 - +0.6 144,646 - -0.6 144,646 - -0.3 144,668 + +0.7 144,669 - -0.6 144,669 - -0.1 144,767 + +0.4 144,768 - +0.1 144,810 + HGI48_RS00610 0.11 +0.0 144,810 + HGI48_RS00610 0.11 +0.4 144,810 + HGI48_RS00610 0.11 +0.6 144,810 + HGI48_RS00610 0.11 +0.5 144,811 - HGI48_RS00610 0.12 -0.6 144,811 - HGI48_RS00610 0.12 +0.8 144,811 - HGI48_RS00610 0.12 +0.1 144,811 - HGI48_RS00610 0.12 +0.3 144,811 - HGI48_RS00610 0.12 -0.3 144,814 + HGI48_RS00610 0.12 +0.7 144,814 + HGI48_RS00610 0.12 +0.6 144,814 + HGI48_RS00610 0.12 -0.1 144,814 + HGI48_RS00610 0.12 -2.3 144,814 + HGI48_RS00610 0.12 +0.5 144,815 - HGI48_RS00610 0.12 -0.9 144,815 - HGI48_RS00610 0.12 +0.4 144,815 - HGI48_RS00610 0.12 -0.9 144,854 - HGI48_RS00610 0.14 +1.0 144,906 + HGI48_RS00610 0.18 +0.6 144,906 + HGI48_RS00610 0.18 +0.3 144,906 + HGI48_RS00610 0.18 +0.9 144,906 + HGI48_RS00610 0.18 +0.5 144,906 + HGI48_RS00610 0.18 +2.1 144,907 - HGI48_RS00610 0.18 -0.5 144,907 - HGI48_RS00610 0.18 -1.2 144,912 + -0.5 144,912 + HGI48_RS00610 0.18 -0.9 144,912 + HGI48_RS00610 0.18 +0.1 144,912 + HGI48_RS00610 0.18 +0.1 144,912 + +2.5 144,912 + HGI48_RS00610 0.18 +0.5 144,913 - HGI48_RS00610 0.18 +0.0 144,913 - HGI48_RS00610 0.18 -1.5 144,913 - HGI48_RS00610 0.18 -1.5 144,913 - HGI48_RS00610 0.18 -1.2 144,913 - HGI48_RS00610 0.18 +0.0 144,935 - HGI48_RS00610 0.20 -0.9 144,935 - HGI48_RS00610 0.20 -0.0 144,975 + HGI48_RS00610 0.23 -2.0 145,014 + HGI48_RS00610 0.25 -2.0 145,015 - +1.1 145,039 + HGI48_RS00610 0.27 -0.1 145,040 - HGI48_RS00610 0.27 +0.3 145,047 + HGI48_RS00610 0.27 +0.1 145,047 + +1.1 145,047 + HGI48_RS00610 0.27 +0.0 145,047 + HGI48_RS00610 0.27 -0.8 145,048 - HGI48_RS00610 0.28 -1.5 145,048 - HGI48_RS00610 0.28 -0.7 145,048 - HGI48_RS00610 0.28 +0.7 145,048 - HGI48_RS00610 0.28 +0.4 145,048 - HGI48_RS00610 0.28 -0.9 145,182 + HGI48_RS00610 0.37 -0.1 145,183 - HGI48_RS00610 0.37 +1.1 145,183 - HGI48_RS00610 0.37 -0.8 145,200 + HGI48_RS00610 0.38 -0.3 145,216 - HGI48_RS00610 0.39 +0.5 145,216 - HGI48_RS00610 0.39 -1.7 145,216 - HGI48_RS00610 0.39 +2.6 145,216 - HGI48_RS00610 0.39 +0.3 145,227 - HGI48_RS00610 0.40 +0.0 145,227 - HGI48_RS00610 0.40 -1.0 145,402 + HGI48_RS00610 0.51 -1.5 145,402 + HGI48_RS00610 0.51 -0.3 145,445 + HGI48_RS00610 0.54 -2.0 145,448 + HGI48_RS00610 0.55 +1.6 145,448 + HGI48_RS00610 0.55 +0.1 145,448 + HGI48_RS00610 0.55 +0.8 145,448 + HGI48_RS00610 0.55 +0.6 145,448 + HGI48_RS00610 0.55 -0.5 145,448 + HGI48_RS00610 0.55 +0.9 145,448 + HGI48_RS00610 0.55 -0.9 145,448 + HGI48_RS00610 0.55 -0.2 145,449 - HGI48_RS00610 0.55 -2.5 145,449 - HGI48_RS00610 0.55 +0.4 145,449 - HGI48_RS00610 0.55 +0.1 145,449 - HGI48_RS00610 0.55 -1.6 145,567 + HGI48_RS00610 0.63 +0.4 145,567 + HGI48_RS00610 0.63 -1.9 145,567 + +2.1 145,568 - +1.5 145,568 - +1.5 145,605 - HGI48_RS00610 0.65 -0.5 145,605 - HGI48_RS00610 0.65 +0.9 145,623 + HGI48_RS00610 0.66 -1.6 145,624 - HGI48_RS00610 0.66 +0.5 145,624 - HGI48_RS00610 0.66 -0.0
Or see this region's nucleotide sequence