Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20580

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,596,940	-		HGI48_RS20570	0.58	+0.6
4,596,964	+		HGI48_RS20570	0.60	-1.3
4,596,964	+		HGI48_RS20570	0.60	-0.7
4,596,965	-				+2.6
4,596,965	-		HGI48_RS20570	0.60	-0.6
4,596,967	-		HGI48_RS20570	0.60	+0.4
4,597,029	+		HGI48_RS20570	0.65	-0.6
4,597,029	+		HGI48_RS20570	0.65	+0.5
4,597,029	+		HGI48_RS20570	0.65	+0.9
4,597,029	+		HGI48_RS20570	0.65	-0.3
4,597,029	+		HGI48_RS20570	0.65	-0.1
4,597,030	-		HGI48_RS20570	0.65	-1.7
4,597,030	-		HGI48_RS20570	0.65	+0.1
4,597,030	-		HGI48_RS20570	0.65	+0.3
4,597,030	-		HGI48_RS20570	0.65	+1.0
4,597,030	-		HGI48_RS20570	0.65	-0.0
4,597,033	+		HGI48_RS20570	0.65	-0.3
4,597,034	-		HGI48_RS20570	0.65	-1.0
4,597,040	+		HGI48_RS20570	0.66	+0.3
4,597,041	-		HGI48_RS20570	0.66	-1.0
4,597,080	+		HGI48_RS20570	0.69	-2.3
4,597,081	-		HGI48_RS20570	0.69	-0.8
4,597,113	+		HGI48_RS20570	0.72	-0.2
4,597,113	+		HGI48_RS20570	0.72	-0.4
4,597,113	+		HGI48_RS20570	0.72	+1.0
4,597,114	-		HGI48_RS20570	0.72	-0.6
4,597,114	-				+0.7
4,597,130	-		HGI48_RS20570	0.73	-1.3
4,597,148	-		HGI48_RS20570	0.75	-1.5
4,597,243	+		HGI48_RS20570	0.82	+1.3
4,597,243	+		HGI48_RS20570	0.82	+0.2
4,597,244	-				+0.3
4,597,244	-		HGI48_RS20570	0.82	-1.1
4,597,244	-		HGI48_RS20570	0.82	+1.3
4,597,244	-		HGI48_RS20570	0.82	+1.0
4,597,246	+		HGI48_RS20570	0.83	-2.5
4,597,246	+		HGI48_RS20570	0.83	+2.1
4,597,246	+		HGI48_RS20570	0.83	-0.4
4,597,254	+		HGI48_RS20570	0.83	-1.0
4,597,254	+		HGI48_RS20570	0.83	+0.3
4,597,356	+				-1.9
4,597,356	+				-0.5
4,597,382	-				-0.1
4,597,388	+				-1.3
4,597,405	+				+2.6
4,597,465	+				+2.0
4,597,465	+				-1.0
4,597,465	+				-0.3
4,597,465	+				-0.7
4,597,465	+				-0.4
4,597,465	+				+1.9
4,597,465	+				-1.5
4,597,465	+				+0.4
4,597,465	+				+0.3
4,597,466	-				-1.3
4,597,466	-				-0.3
4,597,466	-				-0.7
4,597,466	-				-2.4
4,597,498	-				+0.7
4,597,507	-				-1.5
4,597,523	+				-1.4
4,597,524	-				+1.6
4,597,524	-				-0.7
4,597,540	-				+0.9
4,597,540	-				-0.7
4,597,550	+				-0.6
4,597,550	+				-1.3
4,597,622	-		HGI48_RS20575	0.26	-0.7
4,597,622	-		HGI48_RS20575	0.26	-2.6
4,597,622	-		HGI48_RS20575	0.26	+1.1
4,597,624	+		HGI48_RS20575	0.27	+1.3
4,597,625	-		HGI48_RS20575	0.28	-0.6
4,597,625	-		HGI48_RS20575	0.28	-1.9
4,597,625	-		HGI48_RS20575	0.28	-1.9
4,597,648	+		HGI48_RS20575	0.36	-1.2
4,597,648	+		HGI48_RS20575	0.36	-0.7
4,597,649	-				+0.3
4,597,649	-		HGI48_RS20575	0.37	-1.9
4,597,649	-		HGI48_RS20575	0.37	-0.7
4,597,649	-		HGI48_RS20575	0.37	-1.3
4,597,676	+		HGI48_RS20575	0.47	+1.0
4,597,676	+		HGI48_RS20575	0.47	-1.3
4,597,676	+		HGI48_RS20575	0.47	-1.9
4,597,676	+		HGI48_RS20575	0.47	-0.6
4,597,676	+		HGI48_RS20575	0.47	-1.4
4,597,676	+		HGI48_RS20575	0.47	-1.5
4,597,676	+		HGI48_RS20575	0.47	+0.5
4,597,676	+		HGI48_RS20575	0.47	-0.1
4,597,676	+		HGI48_RS20575	0.47	-0.5
4,597,677	-		HGI48_RS20575	0.48	-0.7
4,597,677	-		HGI48_RS20575	0.48	-1.9
4,597,677	-		HGI48_RS20575	0.48	-1.7
4,597,677	-		HGI48_RS20575	0.48	-1.0
4,597,700	+		HGI48_RS20575	0.56	+0.1
4,597,700	+		HGI48_RS20575	0.56	-0.0
4,597,701	-				+0.3
4,597,757	+		HGI48_RS20575	0.78	-1.7
4,597,757	+		HGI48_RS20575	0.78	-1.0
4,597,757	+		HGI48_RS20575	0.78	+0.3
4,597,757	+		HGI48_RS20575	0.78	+0.0
4,597,758	-		HGI48_RS20575	0.79	-0.5
4,597,758	-		HGI48_RS20575	0.79	-0.0
4,597,789	+				+0.5
4,597,808	+				-2.0
4,597,871	+				+0.1
4,597,998	+		HGI48_RS20580	0.57	+0.3
4,597,999	-		HGI48_RS20580	0.57	-1.3
4,598,002	+				-0.3
4,598,003	-		HGI48_RS20580	0.59	-0.7
4,598,037	+		HGI48_RS20580	0.75	-2.7
4,598,037	+		HGI48_RS20580	0.75	-2.0
4,598,038	-		HGI48_RS20580	0.75	+0.9
4,598,107	-				-0.3
4,598,127	-				-0.1
4,598,128	+				-0.3
4,598,129	-				-1.9
4,598,168	-				-0.3
4,598,216	+				-1.5
4,598,217	-				-2.3
4,598,218	+				-0.1
4,598,218	+				-0.7
4,598,219	-				+0.7
4,598,222	-				-0.3
4,598,242	+				+0.9
4,598,243	-				+1.0
4,598,297	-				-0.3
4,598,327	-				-2.4
4,598,327	-				-1.0
4,598,339	+				+0.2
4,598,359	+				+0.7
4,598,359	+				+1.6
4,598,359	+				+0.4
4,598,360	-				+1.6
4,598,360	-				+0.3
4,598,360	-				-0.3
4,598,360	-				-0.7
4,598,360	-				-0.8
4,598,360	-				+1.0
4,598,435	+				+1.0
4,598,435	+				-1.6
4,598,436	-				+1.1
4,598,436	-				-0.7
4,598,436	-				-1.3
4,598,575	-				+1.3
4,598,577	+				+1.0
4,598,594	+				+0.2
4,598,631	-				-0.3
4,598,633	-				-0.5
4,598,633	-				+0.1
4,598,646	-				+0.5
4,598,657	+				-1.8
4,598,660	-				+1.0
4,598,660	-				+0.3
4,598,728	+				-0.3
4,598,728	+				+2.6
4,598,738	-				+1.5
4,598,738	-				-1.5
4,598,824	-				-2.1
4,598,882	+				-0.6
4,598,882	+				-1.5
4,598,882	+				+2.9
4,598,883	-				-2.9
4,598,884	+				+1.4
4,598,884	+				-1.7
4,598,884	+				+0.5
4,598,884	+				+2.3
4,598,884	+				-0.5
4,598,884	+				+0.7
4,598,884	+				-0.6
4,598,884	+				+0.5
4,598,885	-				-0.5
4,598,885	-				+0.3
4,598,885	-				-2.2
4,598,885	-				+0.2
4,598,885	-				+1.1
4,598,888	+				-0.9
4,598,889	-				+1.0
4,598,913	-				-0.1
4,598,913	-				-1.0
4,599,046	+				-0.7
4,599,047	-				-0.9
4,599,047	-				-1.7