Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18345

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,116,237	+				-1.7
4,116,238	-				-1.3
4,116,238	-				-0.1
4,116,238	-				-1.4
4,116,292	+				-0.7
4,116,292	+				+0.1
4,116,292	+				-0.4
4,116,292	+				-2.8
4,116,292	+				-0.7
4,116,292	+				-1.2
4,116,293	-				+0.7
4,116,293	-				+1.1
4,116,293	-				-0.1
4,116,293	-				-0.3
4,116,293	-				+1.6
4,116,321	+				-2.0
4,116,322	-				-1.2
4,116,322	-				-0.9
4,116,762	+		HGI48_RS18340	0.55	+2.0
4,116,762	+		HGI48_RS18340	0.55	-2.7
4,116,984	+		HGI48_RS18340	0.79	-0.9
4,117,048	+		HGI48_RS18340	0.86	-1.2
4,117,049	-		HGI48_RS18340	0.86	-1.8
4,117,167	+				+2.1
4,117,167	+				-1.9
4,117,209	+				-0.4
4,117,210	-				-1.2
4,117,292	+				+0.3
4,117,295	+				+0.7
4,117,296	-				-1.9
4,117,304	+				+1.1
4,117,409	+				-2.4
4,117,409	+				-2.2
4,117,409	+				-1.2
4,117,409	+				-1.7
4,117,414	+				+0.8
4,117,422	+				-0.2
4,117,422	+				+1.3
4,117,512	+		HGI48_RS18345	0.13	-1.4
4,117,512	+		HGI48_RS18345	0.13	-0.0
4,117,512	+				-0.4
4,117,513	-		HGI48_RS18345	0.13	-1.4
4,117,513	-		HGI48_RS18345	0.13	-1.2
4,117,566	-		HGI48_RS18345	0.16	-2.8
4,117,713	+		HGI48_RS18345	0.22	-3.8
4,117,738	-				+1.1
4,117,826	+		HGI48_RS18345	0.26	-1.5
4,117,826	+				+0.1
4,117,827	-		HGI48_RS18345	0.26	-2.6
4,117,827	-		HGI48_RS18345	0.26	-1.4
4,117,836	+		HGI48_RS18345	0.27	+0.1
4,117,836	+				-0.4
4,117,874	+		HGI48_RS18345	0.28	+0.3
4,117,875	-		HGI48_RS18345	0.28	-2.4
4,117,877	+		HGI48_RS18345	0.28	-1.4
4,117,878	-		HGI48_RS18345	0.28	-1.2
4,117,950	-		HGI48_RS18345	0.31	+1.3
4,117,977	+		HGI48_RS18345	0.32	-3.2
4,117,978	-		HGI48_RS18345	0.32	-1.9
4,118,009	+		HGI48_RS18345	0.34	-1.9
4,118,009	+		HGI48_RS18345	0.34	-0.6
4,118,010	-		HGI48_RS18345	0.34	-0.7
4,118,010	-		HGI48_RS18345	0.34	+0.3
4,118,089	-		HGI48_RS18345	0.37	-1.7
4,118,089	-		HGI48_RS18345	0.37	+1.1
4,118,101	+		HGI48_RS18345	0.37	-2.2
4,118,102	-		HGI48_RS18345	0.37	+0.4
4,118,102	-		HGI48_RS18345	0.37	-2.9
4,118,102	-		HGI48_RS18345	0.37	-1.5
4,118,102	-		HGI48_RS18345	0.37	-1.2
4,118,256	+		HGI48_RS18345	0.44	-1.0
4,118,257	-		HGI48_RS18345	0.44	-2.0
4,118,461	+		HGI48_RS18345	0.52	-2.9
4,118,462	-		HGI48_RS18345	0.52	-0.4
4,118,462	-		HGI48_RS18345	0.52	-1.3
4,118,504	+		HGI48_RS18345	0.54	-1.2
4,118,504	+		HGI48_RS18345	0.54	+0.1
4,118,505	-		HGI48_RS18345	0.54	+1.3
4,118,505	-		HGI48_RS18345	0.54	-1.2
4,118,574	-		HGI48_RS18345	0.57	-0.9
4,118,668	-				+0.1
4,118,742	+		HGI48_RS18345	0.63	-1.2
4,118,743	-		HGI48_RS18345	0.63	-1.4
4,118,796	+		HGI48_RS18345	0.66	-1.7
4,118,864	+		HGI48_RS18345	0.68	-0.7
4,118,865	-		HGI48_RS18345	0.68	-2.4
4,118,888	+		HGI48_RS18345	0.69	-2.3
4,118,888	+		HGI48_RS18345	0.69	-0.4
4,118,940	+		HGI48_RS18345	0.72	-0.3
4,118,941	-		HGI48_RS18345	0.72	-0.7
4,118,941	-		HGI48_RS18345	0.72	-1.9
4,118,941	-				+1.1
4,118,942	+		HGI48_RS18345	0.72	+0.4
4,118,942	+		HGI48_RS18345	0.72	-1.2
4,118,942	+		HGI48_RS18345	0.72	-1.5
4,118,942	+		HGI48_RS18345	0.72	+1.6
4,118,942	+				+0.1
4,118,943	-		HGI48_RS18345	0.72	-1.2
4,118,943	-		HGI48_RS18345	0.72	-2.2
4,118,943	-		HGI48_RS18345	0.72	-2.0
4,118,943	-		HGI48_RS18345	0.72	-1.2
4,118,943	-		HGI48_RS18345	0.72	-1.7
4,119,015	-		HGI48_RS18345	0.75	+0.1
4,119,120	+		HGI48_RS18345	0.79	-1.4
4,119,120	+		HGI48_RS18345	0.79	-0.4
4,119,120	+		HGI48_RS18345	0.79	-1.2
4,119,161	+		HGI48_RS18345	0.81	+0.7
4,119,162	-		HGI48_RS18345	0.81	-0.1
4,119,162	-		HGI48_RS18345	0.81	-1.2
4,119,230	-		HGI48_RS18345	0.83	-0.4
4,119,273	+		HGI48_RS18345	0.85	-1.8
4,119,273	+		HGI48_RS18345	0.85	-0.1
4,119,273	+		HGI48_RS18345	0.85	+2.0
4,119,274	-		HGI48_RS18345	0.85	+0.1
4,119,274	-		HGI48_RS18345	0.85	-0.6
4,119,450	+				-0.8
4,119,450	+				+0.2
4,119,451	-				-0.7
4,119,451	-				+0.2
4,119,451	-				-0.8
4,119,471	+				-1.8
4,119,647	+				-1.4
4,119,647	+				-0.8
4,119,648	-				-1.7
4,119,648	-				-2.5
4,119,715	+				-0.2
4,119,716	-				+0.6
4,119,716	-				-0.4
4,119,735	-				+0.2
4,119,735	-				-1.2
4,119,735	-				-2.4
4,119,745	+				-2.9
4,119,746	-				+0.2
4,119,801	+				-2.4
4,119,839	+				-1.5
4,119,839	+				+0.3
4,119,839	+				-2.0
4,119,840	-				-0.8
4,119,842	+				-0.1
4,119,842	+				-0.4
4,119,843	-				-0.6
4,119,843	-				-0.5
4,119,845	+				-2.3
4,119,845	+				+0.2
4,119,883	+				-0.8
4,119,894	+				-1.2
4,119,895	-				-2.0
4,119,916	+				-0.8
4,119,919	+				-2.0
4,119,919	+				-0.8
4,119,919	+				-0.9
4,119,920	-				-1.2
4,119,920	-				-1.2
4,119,920	-				-1.2
4,119,920	-				-1.4
4,119,920	-				-0.8
4,119,940	+				-0.8
4,119,940	+				-1.4
4,119,941	-				+1.7
4,119,966	+				+0.4
4,119,970	+				-0.4
4,119,970	+				+0.0
4,119,970	+				-0.7
4,119,970	+				+1.8
4,119,971	-				+0.6
4,119,971	-				-2.0
4,119,971	-				-1.2
4,119,975	+				+0.6
4,119,975	+				-1.2
4,120,126	+				-1.2
4,120,126	+				+0.2
4,120,126	+				-1.7
4,120,126	+				-2.7
4,120,127	-				-1.2
4,120,127	-				-1.4
4,120,127	-				+1.2
4,120,135	+				-1.3
4,120,318	-		HGI48_RS18350	0.35	+0.7
4,120,323	+		HGI48_RS18350	0.36	+0.2
4,120,323	+		HGI48_RS18350	0.36	-0.0
4,120,323	+		HGI48_RS18350	0.36	-1.2
4,120,323	+		HGI48_RS18350	0.36	-0.8
4,120,323	+		HGI48_RS18350	0.36	-0.1
4,120,323	+		HGI48_RS18350	0.36	-2.0
4,120,323	+		HGI48_RS18350	0.36	-1.4
4,120,323	+		HGI48_RS18350	0.36	-1.4
4,120,323	+		HGI48_RS18350	0.36	-0.4
4,120,324	-		HGI48_RS18350	0.36	+1.3
4,120,324	-		HGI48_RS18350	0.36	+0.2
4,120,324	-		HGI48_RS18350	0.36	+1.1
4,120,324	-		HGI48_RS18350	0.36	-0.4
4,120,324	-				-0.4
4,120,360	-		HGI48_RS18350	0.41	+1.0
4,120,459	+		HGI48_RS18350	0.55	-0.4
4,120,512	+		HGI48_RS18350	0.63	-1.7
4,120,512	+		HGI48_RS18350	0.63	-1.2
4,120,512	+		HGI48_RS18350	0.63	-2.8
4,120,513	-		HGI48_RS18350	0.63	+2.3
4,120,513	-		HGI48_RS18350	0.63	-1.2
4,120,513	-				+0.6
4,120,513	-		HGI48_RS18350	0.63	+0.2
4,120,513	-		HGI48_RS18350	0.63	-1.7
4,120,513	-		HGI48_RS18350	0.63	+0.7
4,120,515	+		HGI48_RS18350	0.63	-0.0
4,120,515	+		HGI48_RS18350	0.63	+2.0
4,120,516	-		HGI48_RS18350	0.63	-1.0
4,120,601	+		HGI48_RS18350	0.75	-1.7
4,120,602	-		HGI48_RS18350	0.75	-0.4
4,120,602	-		HGI48_RS18350	0.75	+1.3