Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS18145 and HGI48_RS18150 overlap by 4 nucleotides HGI48_RS18150 and HGI48_RS18155 overlap by 4 nucleotides HGI48_RS18155 and HGI48_RS18160 are separated by 66 nucleotides HGI48_RS18160 and HGI48_RS18165 are separated by 179 nucleotides
HGI48_RS18145: HGI48_RS18145 - hypothetical protein, at 4,070,102 to 4,070,665
_RS18145
HGI48_RS18150: HGI48_RS18150 - hypothetical protein, at 4,070,662 to 4,071,228
_RS18150
HGI48_RS18155: HGI48_RS18155 - hypothetical protein, at 4,071,225 to 4,071,791
_RS18155
HGI48_RS18160: HGI48_RS18160 - Hcp family type VI secretion system effector, at 4,071,858 to 4,072,337
_RS18160
HGI48_RS18165: HGI48_RS18165 - DNA polymerase II, at 4,072,517 to 4,074,892
_RS18165
Position (kb) 4071
4072 Strain fitness (log2 ratio) -2
-1
0
1 at 4070.427 kb on + strand, within HGI48_RS18145 at 4070.451 kb on + strand at 4070.472 kb on - strand, within HGI48_RS18145 at 4070.488 kb on + strand, within HGI48_RS18145 at 4070.722 kb on - strand, within HGI48_RS18150 at 4070.808 kb on + strand, within HGI48_RS18150 at 4070.844 kb on + strand, within HGI48_RS18150 at 4070.844 kb on + strand, within HGI48_RS18150 at 4070.861 kb on + strand, within HGI48_RS18150 at 4071.112 kb on - strand, within HGI48_RS18150 at 4071.120 kb on + strand, within HGI48_RS18150 at 4071.120 kb on + strand, within HGI48_RS18150 at 4071.332 kb on - strand, within HGI48_RS18155 at 4071.412 kb on + strand, within HGI48_RS18155 at 4071.413 kb on - strand, within HGI48_RS18155 at 4071.416 kb on + strand, within HGI48_RS18155 at 4071.581 kb on + strand, within HGI48_RS18155 at 4071.612 kb on - strand, within HGI48_RS18155 at 4071.666 kb on - strand, within HGI48_RS18155 at 4071.691 kb on + strand, within HGI48_RS18155 at 4071.935 kb on + strand, within HGI48_RS18160 at 4071.935 kb on + strand, within HGI48_RS18160 at 4072.126 kb on - strand at 4072.311 kb on + strand at 4072.361 kb on - strand at 4072.379 kb on + strand at 4072.382 kb on + strand at 4072.391 kb on + strand at 4072.391 kb on + strand at 4072.391 kb on + strand at 4072.396 kb on + strand at 4072.397 kb on - strand at 4072.445 kb on - strand at 4072.467 kb on + strand at 4072.468 kb on - strand at 4072.468 kb on - strand at 4072.468 kb on - strand at 4072.471 kb on + strand at 4072.471 kb on + strand at 4072.471 kb on + strand at 4072.471 kb on + strand at 4072.471 kb on + strand at 4072.472 kb on - strand at 4072.487 kb on + strand at 4072.487 kb on + strand at 4072.488 kb on - strand at 4072.488 kb on - strand at 4072.488 kb on - strand at 4072.497 kb on + strand at 4072.497 kb on + strand at 4072.498 kb on - strand at 4072.498 kb on - strand at 4072.570 kb on + strand at 4072.613 kb on - strand at 4072.687 kb on + strand at 4072.687 kb on + strand at 4072.688 kb on - strand at 4072.772 kb on + strand at 4072.773 kb on - strand, within HGI48_RS18165
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,070,427 + HGI48_RS18145 0.58 -1.4 4,070,451 + -0.4 4,070,472 - HGI48_RS18145 0.66 -1.3 4,070,488 + HGI48_RS18145 0.68 -0.3 4,070,722 - HGI48_RS18150 0.11 +0.0 4,070,808 + HGI48_RS18150 0.26 -1.9 4,070,844 + HGI48_RS18150 0.32 -1.2 4,070,844 + HGI48_RS18150 0.32 -0.7 4,070,861 + HGI48_RS18150 0.35 +0.1 4,071,112 - HGI48_RS18150 0.79 -0.2 4,071,120 + HGI48_RS18150 0.81 -1.2 4,071,120 + HGI48_RS18150 0.81 -0.9 4,071,332 - HGI48_RS18155 0.19 +1.1 4,071,412 + HGI48_RS18155 0.33 -0.1 4,071,413 - HGI48_RS18155 0.33 -2.0 4,071,416 + HGI48_RS18155 0.34 +0.5 4,071,581 + HGI48_RS18155 0.63 -0.2 4,071,612 - HGI48_RS18155 0.68 -1.3 4,071,666 - HGI48_RS18155 0.78 -0.5 4,071,691 + HGI48_RS18155 0.82 -1.7 4,071,935 + HGI48_RS18160 0.16 -1.3 4,071,935 + HGI48_RS18160 0.16 -0.9 4,072,126 - +0.6 4,072,311 + +0.6 4,072,361 - -0.9 4,072,379 + -0.5 4,072,382 + -0.9 4,072,391 + +0.6 4,072,391 + -2.0 4,072,391 + -1.2 4,072,396 + -1.2 4,072,397 - -1.0 4,072,445 - -2.3 4,072,467 + +0.7 4,072,468 - +0.1 4,072,468 - -1.3 4,072,468 - -0.7 4,072,471 + -0.2 4,072,471 + +0.1 4,072,471 + -1.2 4,072,471 + -2.3 4,072,471 + -1.2 4,072,472 - +1.6 4,072,487 + +0.6 4,072,487 + +0.8 4,072,488 - +0.1 4,072,488 - +1.6 4,072,488 - -0.8 4,072,497 + -0.4 4,072,497 + +0.4 4,072,498 - -0.7 4,072,498 - -1.2 4,072,570 + +0.2 4,072,613 - +0.1 4,072,687 + -1.0 4,072,687 + -0.2 4,072,688 - -0.1 4,072,772 + -0.4 4,072,773 - HGI48_RS18165 0.11 +0.8
Or see this region's nucleotide sequence