Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15305

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,440,187	+				+0.9
3,440,386	+				-1.4
3,440,387	-				+0.3
3,440,387	-				-0.1
3,440,387	-				-0.3
3,440,444	-				-1.7
3,440,444	-				-0.3
3,440,536	+				+1.0
3,440,536	+				+0.5
3,440,537	-				-0.4
3,440,577	+				-1.1
3,440,577	+				+0.9
3,440,591	+				-0.9
3,440,592	-				-1.4
3,440,594	+				-0.3
3,440,594	+				-1.0
3,440,595	-				-1.7
3,440,595	-				+0.9
3,440,595	-				-0.7
3,440,595	-				+2.3
3,440,619	+				-0.3
3,440,637	-				-0.7
3,440,642	+				-1.4
3,440,642	+				+0.7
3,440,642	+				+0.2
3,440,656	+				+0.1
3,440,656	+				+1.2
3,440,656	+				-1.4
3,440,656	+				+0.9
3,440,656	+				+0.3
3,440,657	-				-1.8
3,440,657	-				-2.7
3,440,657	-				-0.7
3,440,657	-				-1.9
3,440,664	-				+0.4
3,440,740	+		HGI48_RS15300	0.21	-1.9
3,440,740	+		HGI48_RS15300	0.21	-2.5
3,440,741	-		HGI48_RS15300	0.21	-0.7
3,440,741	-		HGI48_RS15300	0.21	-0.7
3,440,741	-				-0.7
3,440,741	-		HGI48_RS15300	0.21	-0.8
3,440,741	-				-0.7
3,440,744	+		HGI48_RS15300	0.22	-0.1
3,440,744	+		HGI48_RS15300	0.22	+1.4
3,440,745	-		HGI48_RS15300	0.22	-0.5
3,440,745	-		HGI48_RS15300	0.22	-0.8
3,440,745	-				-0.1
3,440,745	-		HGI48_RS15300	0.22	+0.2
3,440,957	+		HGI48_RS15300	0.70	+0.2
3,441,150	+				-1.1
3,441,150	+				+0.6
3,441,150	+				-0.8
3,441,150	+				-0.4
3,441,150	+				-1.9
3,441,151	-				-0.1
3,441,151	-				+0.1
3,441,168	+				-0.6
3,441,168	+				+0.6
3,441,169	-				+0.4
3,441,169	-				+3.5
3,441,169	-				+0.6
3,441,169	-				+0.2
3,441,169	-				-1.1
3,441,388	+		HGI48_RS15305	0.13	+0.5
3,441,388	+		HGI48_RS15305	0.13	-1.4
3,441,392	+		HGI48_RS15305	0.13	-1.1
3,441,392	+		HGI48_RS15305	0.13	+0.9
3,441,393	-				+1.9
3,441,453	+		HGI48_RS15305	0.16	-0.8
3,441,453	+		HGI48_RS15305	0.16	-0.7
3,441,459	-		HGI48_RS15305	0.16	-0.1
3,441,459	-		HGI48_RS15305	0.16	-0.3
3,441,492	+		HGI48_RS15305	0.17	-1.9
3,441,492	+		HGI48_RS15305	0.17	-2.7
3,441,492	+		HGI48_RS15305	0.17	-0.4
3,441,492	+		HGI48_RS15305	0.17	+0.3
3,441,492	+		HGI48_RS15305	0.17	-0.2
3,441,492	+		HGI48_RS15305	0.17	-1.1
3,441,497	+		HGI48_RS15305	0.18	+0.6
3,441,516	+		HGI48_RS15305	0.18	-0.1
3,441,517	-				+0.3
3,441,567	+				-0.7
3,441,568	-		HGI48_RS15305	0.21	-0.2
3,441,568	-		HGI48_RS15305	0.21	-2.2
3,441,568	-		HGI48_RS15305	0.21	-1.4
3,441,569	+		HGI48_RS15305	0.21	-0.3
3,441,658	-		HGI48_RS15305	0.25	-0.6
3,441,824	+				+1.9
3,441,825	-		HGI48_RS15305	0.33	-1.1
3,441,825	-		HGI48_RS15305	0.33	-1.4
3,441,825	-		HGI48_RS15305	0.33	-0.7
3,441,825	-		HGI48_RS15305	0.33	-1.7
3,441,834	+		HGI48_RS15305	0.33	-2.4
3,441,835	-		HGI48_RS15305	0.33	-0.9
3,441,835	-		HGI48_RS15305	0.33	-0.6
3,441,837	+				+1.3
3,441,837	+		HGI48_RS15305	0.33	-0.8
3,441,837	+		HGI48_RS15305	0.33	-0.7
3,441,837	+		HGI48_RS15305	0.33	+1.3
3,441,837	+				-0.7
3,441,837	+				-0.7
3,441,838	-		HGI48_RS15305	0.33	-1.9
3,441,838	-		HGI48_RS15305	0.33	-2.5
3,441,838	-		HGI48_RS15305	0.33	+0.3
3,441,838	-		HGI48_RS15305	0.33	-1.4
3,441,838	-		HGI48_RS15305	0.33	-0.3
3,441,838	-		HGI48_RS15305	0.33	-1.7
3,441,838	-		HGI48_RS15305	0.33	-1.1
3,441,838	-		HGI48_RS15305	0.33	+0.1
3,441,838	-		HGI48_RS15305	0.33	-1.9
3,441,898	+		HGI48_RS15305	0.36	-0.2
3,441,898	+		HGI48_RS15305	0.36	+0.5
3,441,898	+		HGI48_RS15305	0.36	-1.9
3,441,898	+		HGI48_RS15305	0.36	-1.8
3,441,899	-				+0.9
3,441,899	-		HGI48_RS15305	0.36	-0.1
3,441,899	-		HGI48_RS15305	0.36	-0.8
3,441,899	-		HGI48_RS15305	0.36	-1.5
3,441,899	-		HGI48_RS15305	0.36	+0.5
3,441,899	-		HGI48_RS15305	0.36	+0.7
3,441,906	-		HGI48_RS15305	0.36	+0.6
3,441,946	+		HGI48_RS15305	0.38	+0.6
3,441,947	-		HGI48_RS15305	0.38	+0.2
3,441,947	-		HGI48_RS15305	0.38	+0.3
3,441,947	-		HGI48_RS15305	0.38	-2.1
3,441,953	+		HGI48_RS15305	0.38	+0.6
3,441,953	+				-0.7
3,441,953	+		HGI48_RS15305	0.38	-1.4
3,441,954	-				-0.7
3,441,954	-		HGI48_RS15305	0.38	-1.1
3,441,954	-		HGI48_RS15305	0.38	-0.5
3,441,954	-		HGI48_RS15305	0.38	-1.7
3,442,009	-		HGI48_RS15305	0.41	-1.4
3,442,124	+		HGI48_RS15305	0.46	-1.7
3,442,150	+		HGI48_RS15305	0.47	+1.7
3,442,151	-		HGI48_RS15305	0.47	-1.1
3,442,151	-		HGI48_RS15305	0.47	+0.3
3,442,187	+		HGI48_RS15305	0.49	-0.1
3,442,187	+		HGI48_RS15305	0.49	-1.7
3,442,227	-		HGI48_RS15305	0.51	+0.9
3,442,274	+		HGI48_RS15305	0.53	-0.5
3,442,274	+		HGI48_RS15305	0.53	+0.2
3,442,274	+		HGI48_RS15305	0.53	-3.2
3,442,274	+		HGI48_RS15305	0.53	-1.4
3,442,275	-		HGI48_RS15305	0.53	-0.5
3,442,275	-		HGI48_RS15305	0.53	-1.9
3,442,275	-		HGI48_RS15305	0.53	-1.0
3,442,275	-		HGI48_RS15305	0.53	+1.6
3,442,409	+		HGI48_RS15305	0.59	+0.1
3,442,409	+		HGI48_RS15305	0.59	-1.7
3,442,413	+		HGI48_RS15305	0.59	+1.3
3,442,413	+		HGI48_RS15305	0.59	-1.4
3,442,413	+		HGI48_RS15305	0.59	-1.0
3,442,413	+		HGI48_RS15305	0.59	-0.7
3,442,414	-		HGI48_RS15305	0.59	-0.1
3,442,414	-		HGI48_RS15305	0.59	+0.7
3,442,414	-		HGI48_RS15305	0.59	-2.1
3,442,414	-		HGI48_RS15305	0.59	-1.4
3,442,414	-				+1.7
3,442,414	-		HGI48_RS15305	0.59	-0.4
3,442,414	-		HGI48_RS15305	0.59	-2.2
3,442,414	-		HGI48_RS15305	0.59	-1.3
3,442,445	+		HGI48_RS15305	0.61	+0.9
3,442,445	+		HGI48_RS15305	0.61	-0.6
3,442,446	-		HGI48_RS15305	0.61	+0.3
3,442,491	+		HGI48_RS15305	0.63	+0.2
3,442,491	+		HGI48_RS15305	0.63	+0.9
3,442,491	+		HGI48_RS15305	0.63	+0.3
3,442,491	+		HGI48_RS15305	0.63	-0.4
3,442,491	+		HGI48_RS15305	0.63	+0.9
3,442,491	+		HGI48_RS15305	0.63	-0.3
3,442,491	+		HGI48_RS15305	0.63	-1.2
3,442,492	-				-0.1
3,442,492	-				-0.7
3,442,492	-		HGI48_RS15305	0.63	-1.1
3,442,492	-		HGI48_RS15305	0.63	-0.9
3,442,492	-		HGI48_RS15305	0.63	-1.4
3,442,492	-		HGI48_RS15305	0.63	-0.4
3,442,492	-		HGI48_RS15305	0.63	-2.1
3,442,492	-		HGI48_RS15305	0.63	+0.1
3,442,493	+		HGI48_RS15305	0.63	-0.5
3,442,494	-		HGI48_RS15305	0.63	-0.4
3,442,572	+		HGI48_RS15305	0.67	-2.5
3,442,572	+				-0.7
3,442,572	+		HGI48_RS15305	0.67	+0.5
3,442,573	-				+0.9
3,442,573	-		HGI48_RS15305	0.67	+0.1
3,442,573	-		HGI48_RS15305	0.67	+0.2
3,442,619	+		HGI48_RS15305	0.69	+0.5
3,442,667	+		HGI48_RS15305	0.71	-2.1
3,442,667	+		HGI48_RS15305	0.71	+0.5
3,442,709	+		HGI48_RS15305	0.73	-0.3
3,442,710	-		HGI48_RS15305	0.73	-2.5
3,442,769	+		HGI48_RS15305	0.76	-3.0
3,442,769	+				+3.3
3,442,769	+		HGI48_RS15305	0.76	-0.2
3,442,769	+		HGI48_RS15305	0.76	-0.5
3,442,769	+		HGI48_RS15305	0.76	-1.1
3,442,770	-				+0.9
3,442,770	-		HGI48_RS15305	0.76	-1.1
3,442,770	-		HGI48_RS15305	0.76	-1.1
3,442,780	-		HGI48_RS15305	0.76	-0.1
3,442,834	-		HGI48_RS15305	0.78	+0.3
3,442,895	+				-0.1
3,442,895	+		HGI48_RS15305	0.81	-1.4
3,442,896	-		HGI48_RS15305	0.81	-1.1
3,442,977	+				-0.7
3,442,978	-		HGI48_RS15305	0.85	-0.1
3,442,978	-		HGI48_RS15305	0.85	+1.3
3,442,978	-				-0.7
3,442,978	-		HGI48_RS15305	0.85	-0.7
3,442,978	-		HGI48_RS15305	0.85	-0.1
3,442,979	+		HGI48_RS15305	0.85	-0.7
3,442,979	+				-0.7
3,442,979	+		HGI48_RS15305	0.85	+0.1
3,442,979	+		HGI48_RS15305	0.85	-0.1
3,442,979	+		HGI48_RS15305	0.85	-1.9
3,442,979	+		HGI48_RS15305	0.85	+0.5
3,442,979	+		HGI48_RS15305	0.85	-0.3
3,442,979	+		HGI48_RS15305	0.85	-1.7
3,442,979	+		HGI48_RS15305	0.85	-0.4
3,442,979	+				+1.9
3,442,979	+		HGI48_RS15305	0.85	-1.4
3,442,980	-		HGI48_RS15305	0.85	-1.1
3,442,980	-		HGI48_RS15305	0.85	-1.9
3,442,980	-		HGI48_RS15305	0.85	-1.4
3,442,980	-		HGI48_RS15305	0.85	-3.0
3,442,980	-		HGI48_RS15305	0.85	+0.1
3,442,980	-		HGI48_RS15305	0.85	+0.6
3,443,055	+		HGI48_RS15305	0.89	-1.1
3,443,056	-		HGI48_RS15305	0.89	-1.1
3,443,189	+				-0.2
3,443,190	-				-1.9
3,443,194	+				-2.1
3,443,227	+				-2.7
3,443,260	+				-1.0
3,443,261	-				-0.5
3,443,261	-				-1.4
3,443,304	+				-0.1
3,443,304	+				-0.7
3,443,304	+				-1.4
3,443,304	+				-0.6
3,443,305	-				+0.3
3,443,305	-				+0.2
3,443,308	+				-0.7
3,443,308	+				+0.6
3,443,308	+				-0.1
3,443,309	-				-0.1
3,443,309	-				+0.3
3,443,309	-				+0.9
3,443,437	+		HGI48_RS15310	0.21	-1.4
3,443,470	+		HGI48_RS15310	0.27	+0.9
3,443,471	-		HGI48_RS15310	0.27	-2.4
3,443,471	-		HGI48_RS15310	0.27	+0.3
3,443,475	+		HGI48_RS15310	0.27	-1.4
3,443,475	+		HGI48_RS15310	0.27	-2.5
3,443,476	-				+1.9
3,443,512	+		HGI48_RS15310	0.33	+0.2
3,443,513	-		HGI48_RS15310	0.33	-0.4
3,443,518	+		HGI48_RS15310	0.34	-2.1
3,443,518	+		HGI48_RS15310	0.34	-0.4
3,443,537	+		HGI48_RS15310	0.37	-0.8
3,443,537	+		HGI48_RS15310	0.37	-0.9
3,443,606	-		HGI48_RS15310	0.48	-0.8
3,443,606	-		HGI48_RS15310	0.48	-0.5
3,443,688	+		HGI48_RS15310	0.61	-0.7
3,443,688	+		HGI48_RS15310	0.61	-0.5
3,443,688	+		HGI48_RS15310	0.61	-0.3
3,443,689	-		HGI48_RS15310	0.61	-1.7
3,443,691	+		HGI48_RS15310	0.62	-2.1
3,443,691	+		HGI48_RS15310	0.62	-0.4
3,443,691	+		HGI48_RS15310	0.62	-1.1
3,443,692	-		HGI48_RS15310	0.62	-0.4
3,443,724	+		HGI48_RS15310	0.67	-0.4
3,443,787	+		HGI48_RS15310	0.77	-1.1
3,443,787	+		HGI48_RS15310	0.77	-0.3
3,443,787	+		HGI48_RS15310	0.77	-0.3
3,443,788	-		HGI48_RS15310	0.77	-1.0
3,443,788	-				+1.3
3,443,870	-				-1.4
3,443,947	-				-2.8
3,443,999	+				-1.4
3,444,000	-				-1.1
3,444,054	+				-0.5
3,444,054	+				+1.3
3,444,054	+				-1.1
3,444,054	+				-3.0
3,444,054	+				-2.9
3,444,054	+				+0.0
3,444,054	+				-2.1
3,444,054	+				-0.4
3,444,054	+				-0.7
3,444,055	-				-0.1
3,444,055	-				-0.4
3,444,055	-				+0.7
3,444,055	-				-0.1
3,444,062	-				-0.9
3,444,109	+				+0.3
3,444,258	-		HGI48_RS15315	0.21	-1.1