Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12420

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,713,800	+		HGI48_RS12415	0.18	-1.5
2,713,800	+		HGI48_RS12415	0.18	-0.2
2,713,800	+		HGI48_RS12415	0.18	-1.0
2,713,800	+		HGI48_RS12415	0.18	+1.0
2,713,800	+		HGI48_RS12415	0.18	-1.2
2,713,801	-		HGI48_RS12415	0.18	+0.0
2,713,801	-		HGI48_RS12415	0.18	-0.3
2,713,801	-		HGI48_RS12415	0.18	-0.7
2,713,801	-		HGI48_RS12415	0.18	-0.8
2,713,801	-		HGI48_RS12415	0.18	-0.6
2,713,801	-		HGI48_RS12415	0.18	-1.0
2,713,801	-		HGI48_RS12415	0.18	-2.0
2,713,801	-		HGI48_RS12415	0.18	-1.1
2,713,801	-		HGI48_RS12415	0.18	+0.6
2,713,801	-		HGI48_RS12415	0.18	+0.5
2,713,801	-				-0.8
2,713,801	-				+1.8
2,713,801	-		HGI48_RS12415	0.18	-1.7
2,713,805	+		HGI48_RS12415	0.18	-0.4
2,713,805	+				+0.8
2,713,805	+		HGI48_RS12415	0.18	-0.6
2,713,805	+		HGI48_RS12415	0.18	-1.2
2,713,806	-		HGI48_RS12415	0.18	-2.4
2,713,806	-				+0.8
2,713,806	-				+1.8
2,713,806	-		HGI48_RS12415	0.18	+0.1
2,713,930	-		HGI48_RS12415	0.31	-0.2
2,713,930	-		HGI48_RS12415	0.31	-2.2
2,713,990	-				-0.2
2,714,009	+		HGI48_RS12415	0.39	-2.9
2,714,100	+		HGI48_RS12415	0.48	-0.8
2,714,101	-		HGI48_RS12415	0.48	-1.9
2,714,124	+		HGI48_RS12415	0.51	+0.5
2,714,125	-		HGI48_RS12415	0.51	-0.1
2,714,125	-				+1.2
2,714,125	-				-0.8
2,714,236	+				+0.8
2,714,322	+		HGI48_RS12415	0.71	+0.8
2,714,322	+		HGI48_RS12415	0.71	+1.6
2,714,323	-		HGI48_RS12415	0.71	-0.5
2,714,324	+		HGI48_RS12415	0.71	-1.7
2,714,324	+		HGI48_RS12415	0.71	+1.0
2,714,324	+		HGI48_RS12415	0.71	-1.5
2,714,324	+		HGI48_RS12415	0.71	-0.5
2,714,324	+		HGI48_RS12415	0.71	+1.0
2,714,324	+		HGI48_RS12415	0.71	-0.0
2,714,325	-		HGI48_RS12415	0.71	-0.2
2,714,325	-		HGI48_RS12415	0.71	+0.5
2,714,368	+		HGI48_RS12415	0.75	+0.8
2,714,369	-		HGI48_RS12415	0.75	+0.5
2,714,371	+		HGI48_RS12415	0.76	-1.0
2,714,372	-		HGI48_RS12415	0.76	-1.2
2,714,410	+		HGI48_RS12415	0.80	+1.6
2,714,410	+		HGI48_RS12415	0.80	+0.5
2,714,411	-				-0.8
2,714,411	-		HGI48_RS12415	0.80	-0.5
2,714,411	-		HGI48_RS12415	0.80	-2.0
2,714,411	-		HGI48_RS12415	0.80	+0.8
2,714,562	+				-0.3
2,714,562	+				+0.0
2,714,562	+				-0.8
2,714,586	+				+0.6
2,714,592	+				-2.4
2,714,593	-				-0.1
2,714,593	-				+1.2
2,714,616	-				-0.4
2,714,645	+				-2.4
2,714,725	+				+0.8
2,714,725	+				-0.2
2,714,761	+				-0.4
2,714,780	+				-2.0
2,714,781	-				+0.8
2,714,785	+				+1.0
2,714,785	+				+0.8
2,714,786	-				-2.2
2,714,788	-				-0.2
2,714,788	-				-2.0
2,714,832	+				-0.2
2,714,852	-				-1.0
2,714,871	+				-0.1
2,714,871	+				-0.5
2,714,871	+				-1.5
2,714,872	-				-2.2
2,714,872	-				+0.3
2,714,872	-				+0.8
2,714,877	+				+0.6
2,714,877	+				-1.5
2,714,877	+				+0.6
2,714,878	-				-2.9
2,714,878	-				-1.8
2,714,928	+				-0.8
2,714,928	+				+1.0
2,714,929	-				-2.0
2,714,988	+		HGI48_RS12420	0.14	-0.4
2,714,988	+		HGI48_RS12420	0.14	+0.4
2,714,989	-		HGI48_RS12420	0.14	+0.5
2,715,002	-		HGI48_RS12420	0.14	-1.2
2,715,002	-		HGI48_RS12420	0.14	-0.2
2,715,002	-				+0.8
2,715,066	+		HGI48_RS12420	0.18	-2.4
2,715,066	+		HGI48_RS12420	0.18	+0.2
2,715,066	+		HGI48_RS12420	0.18	-0.0
2,715,067	-				+0.2
2,715,090	-		HGI48_RS12420	0.20	-0.9
2,715,090	-		HGI48_RS12420	0.20	+0.8
2,715,090	-				-0.8
2,715,090	-		HGI48_RS12420	0.20	-1.2
2,715,090	-		HGI48_RS12420	0.20	-0.3
2,715,126	+				+0.2
2,715,126	+		HGI48_RS12420	0.22	+0.8
2,715,231	+		HGI48_RS12420	0.29	-2.4
2,715,231	+		HGI48_RS12420	0.29	-0.5
2,715,232	-		HGI48_RS12420	0.29	-0.8
2,715,232	-		HGI48_RS12420	0.29	-0.2
2,715,232	-		HGI48_RS12420	0.29	+0.2
2,715,232	-		HGI48_RS12420	0.29	-1.5
2,715,322	-		HGI48_RS12420	0.34	-3.3
2,715,322	-		HGI48_RS12420	0.34	-0.5
2,715,382	-		HGI48_RS12420	0.38	-0.6
2,715,428	-		HGI48_RS12420	0.41	-0.2
2,715,441	+		HGI48_RS12420	0.42	+0.4
2,715,442	-		HGI48_RS12420	0.42	-0.3
2,715,501	+		HGI48_RS12420	0.46	-0.1
2,715,502	-		HGI48_RS12420	0.46	-1.5
2,715,502	-		HGI48_RS12420	0.46	-0.5
2,715,504	+		HGI48_RS12420	0.46	-2.2
2,715,504	+		HGI48_RS12420	0.46	-0.8
2,715,505	-		HGI48_RS12420	0.46	+0.2
2,715,505	-		HGI48_RS12420	0.46	-0.8
2,715,505	-				-0.8
2,715,505	-		HGI48_RS12420	0.46	+0.8
2,715,507	+		HGI48_RS12420	0.46	+0.2
2,715,507	+		HGI48_RS12420	0.46	+0.4
2,715,507	+		HGI48_RS12420	0.46	-0.2
2,715,507	+		HGI48_RS12420	0.46	+0.4
2,715,507	+		HGI48_RS12420	0.46	-0.4
2,715,508	-				-0.8
2,715,508	-		HGI48_RS12420	0.46	-0.2
2,715,508	-		HGI48_RS12420	0.46	-1.5
2,715,508	-				-0.2
2,715,508	-		HGI48_RS12420	0.46	-0.2
2,715,508	-		HGI48_RS12420	0.46	-0.0
2,715,508	-		HGI48_RS12420	0.46	-0.5
2,715,508	-		HGI48_RS12420	0.46	-0.2
2,715,508	-		HGI48_RS12420	0.46	+0.1
2,715,508	-		HGI48_RS12420	0.46	+0.9
2,715,508	-		HGI48_RS12420	0.46	+0.0
2,715,700	+		HGI48_RS12420	0.58	+0.5
2,715,701	-		HGI48_RS12420	0.58	-2.5
2,715,861	+		HGI48_RS12420	0.68	-1.5
2,715,861	+		HGI48_RS12420	0.68	-1.2
2,715,861	+		HGI48_RS12420	0.68	-0.0
2,715,875	-		HGI48_RS12420	0.69	-0.8
2,716,039	-		HGI48_RS12420	0.79	-0.2
2,716,278	-				+1.8
2,716,278	-				-1.8
2,716,548	+				-1.2
2,716,610	-				-1.4
2,716,610	-				+1.7
2,716,610	-				-0.2
2,716,610	-				-0.7
2,716,613	+				-0.2
2,716,643	+				-1.5
2,716,643	+				-1.5
2,716,648	+				-1.5
2,716,648	+				-1.5
2,716,747	-				-1.8
2,716,821	+				+0.2
2,716,822	-		HGI48_RS12425	0.23	+0.1
2,717,002	-				+0.1
2,717,002	-				-0.8
2,717,041	+				+0.8
2,717,063	+				-0.6
2,717,063	+				-2.0
2,717,063	+				+0.8
2,717,063	+				+0.8
2,717,063	+				-0.2
2,717,064	-				+0.4
2,717,064	-				+1.0
2,717,064	-				-0.2
2,717,064	-				+0.0
2,717,081	+				+0.3
2,717,220	+		HGI48_RS12430	0.30	-0.0
2,717,220	+		HGI48_RS12430	0.30	-0.1
2,717,221	-		HGI48_RS12430	0.30	-1.2
2,717,298	+				+0.8
2,717,299	-		HGI48_RS12430	0.46	-2.5
2,717,299	-		HGI48_RS12430	0.46	+0.3