Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06285

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS06275 and HGI48_RS06280 are separated by 7 nucleotidesHGI48_RS06280 and HGI48_RS06285 are separated by 98 nucleotidesHGI48_RS06285 and HGI48_RS06290 overlap by 4 nucleotides HGI48_RS06275: HGI48_RS06275 - apolipoprotein N-acyltransferase, at 1,332,491 to 1,334,020 _RS06275 HGI48_RS06280: HGI48_RS06280 - CNNM family magnesium/cobalt transport protein CorC, at 1,334,028 to 1,334,897 _RS06280 HGI48_RS06285: HGI48_RS06285 - rRNA maturation RNase YbeY, at 1,334,996 to 1,335,481 _RS06285 HGI48_RS06290: HGI48_RS06290 - PhoH family protein, at 1,335,478 to 1,336,530 _RS06290 Position (kb) 1334 1335 1336Strain fitness (log2 ratio) -2 -1 0 1at 1334.122 kb on + strand, within HGI48_RS06280at 1334.122 kb on + strand, within HGI48_RS06280at 1334.272 kb on + strand, within HGI48_RS06280at 1334.273 kb on - strandat 1334.499 kb on - strand, within HGI48_RS06280at 1334.667 kb on - strand, within HGI48_RS06280at 1334.911 kb on - strandat 1334.911 kb on - strandat 1334.998 kb on - strandat 1335.033 kb on + strandat 1335.573 kb on - strandat 1335.573 kb on - strandat 1335.670 kb on - strand, within HGI48_RS06290at 1335.680 kb on - strand, within HGI48_RS06290at 1335.849 kb on - strand, within HGI48_RS06290at 1335.849 kb on - strand, within HGI48_RS06290at 1335.849 kb on - strand, within HGI48_RS06290at 1335.849 kb on - strand, within HGI48_RS06290at 1335.849 kb on - strand, within HGI48_RS06290at 1335.923 kb on - strand, within HGI48_RS06290at 1335.933 kb on - strand, within HGI48_RS06290at 1336.083 kb on - strand, within HGI48_RS06290at 1336.083 kb on - strand, within HGI48_RS06290at 1336.149 kb on - strand, within HGI48_RS06290at 1336.149 kb on - strand, within HGI48_RS06290at 1336.149 kb on - strand, within HGI48_RS06290at 1336.149 kb on - strand, within HGI48_RS06290at 1336.149 kb on - strand, within HGI48_RS06290at 1336.149 kb on - strand, within HGI48_RS06290at 1336.149 kb on - strand, within HGI48_RS06290at 1336.149 kb on - strandat 1336.149 kb on - strand, within HGI48_RS06290at 1336.149 kb on - strand, within HGI48_RS06290at 1336.303 kb on - strand, within HGI48_RS06290at 1336.332 kb on - strandat 1336.332 kb on - strand, within HGI48_RS06290at 1336.332 kb on - strand, within HGI48_RS06290at 1336.332 kb on - strand, within HGI48_RS06290at 1336.332 kb on - strand, within HGI48_RS06290at 1336.332 kb on - strand, within HGI48_RS06290

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,334,122 + HGI48_RS06280 0.11 -0.2
1,334,122 + HGI48_RS06280 0.11 -0.7
1,334,272 + HGI48_RS06280 0.28 +1.4
1,334,273 - -0.1
1,334,499 - HGI48_RS06280 0.54 -0.1
1,334,667 - HGI48_RS06280 0.73 -1.0
1,334,911 - +0.1
1,334,911 - -0.9
1,334,998 - -2.4
1,335,033 + -1.4
1,335,573 - +0.2
1,335,573 - -2.3
1,335,670 - HGI48_RS06290 0.18 -0.4
1,335,680 - HGI48_RS06290 0.19 -2.3
1,335,849 - HGI48_RS06290 0.35 -0.4
1,335,849 - HGI48_RS06290 0.35 -1.7
1,335,849 - HGI48_RS06290 0.35 -1.9
1,335,849 - HGI48_RS06290 0.35 -0.7
1,335,849 - HGI48_RS06290 0.35 -1.4
1,335,923 - HGI48_RS06290 0.42 -0.1
1,335,933 - HGI48_RS06290 0.43 -0.5
1,336,083 - HGI48_RS06290 0.57 -1.7
1,336,083 - HGI48_RS06290 0.57 +0.0
1,336,149 - HGI48_RS06290 0.64 -0.1
1,336,149 - HGI48_RS06290 0.64 +0.9
1,336,149 - HGI48_RS06290 0.64 -0.5
1,336,149 - HGI48_RS06290 0.64 -0.9
1,336,149 - HGI48_RS06290 0.64 -1.7
1,336,149 - HGI48_RS06290 0.64 -1.4
1,336,149 - HGI48_RS06290 0.64 -0.7
1,336,149 - -0.7
1,336,149 - HGI48_RS06290 0.64 -0.8
1,336,149 - HGI48_RS06290 0.64 -0.1
1,336,303 - HGI48_RS06290 0.78 -1.1
1,336,332 - +1.6
1,336,332 - HGI48_RS06290 0.81 +0.7
1,336,332 - HGI48_RS06290 0.81 -1.1
1,336,332 - HGI48_RS06290 0.81 -1.1
1,336,332 - HGI48_RS06290 0.81 -0.1
1,336,332 - HGI48_RS06290 0.81 -2.4

Or see this region's nucleotide sequence