Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04570 and HGI48_RS04575 are separated by 9 nucleotides HGI48_RS04575 and HGI48_RS04580 overlap by 4 nucleotides HGI48_RS04580 and HGI48_RS04585 are separated by 58 nucleotides
HGI48_RS04570: HGI48_RS04570 - ABC transporter ATP-binding protein, at 958,009 to 959,133
_RS04570
HGI48_RS04575: HGI48_RS04575 - carbohydrate ABC transporter permease, at 959,143 to 959,970
_RS04575
HGI48_RS04580: HGI48_RS04580 - ABC transporter permease subunit, at 959,967 to 960,839
_RS04580
HGI48_RS04585: HGI48_RS04585 - ABC transporter substrate-binding protein, at 960,898 to 962,193
_RS04585
Position (kb) 959
960
961 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 959.117 kb on - strand at 959.117 kb on - strand at 959.117 kb on - strand at 959.117 kb on - strand at 959.122 kb on + strand at 959.122 kb on + strand at 959.122 kb on + strand at 959.122 kb on + strand at 959.123 kb on - strand at 959.123 kb on - strand at 959.123 kb on - strand at 959.144 kb on + strand at 959.144 kb on + strand at 959.144 kb on + strand at 959.144 kb on + strand at 959.144 kb on + strand at 959.145 kb on - strand at 959.145 kb on - strand at 959.145 kb on - strand at 959.177 kb on + strand at 959.177 kb on + strand at 959.178 kb on - strand at 959.178 kb on - strand at 959.178 kb on - strand at 959.178 kb on - strand at 959.178 kb on - strand at 959.178 kb on - strand at 959.252 kb on + strand, within HGI48_RS04575 at 959.252 kb on + strand, within HGI48_RS04575 at 959.252 kb on + strand, within HGI48_RS04575 at 959.253 kb on - strand, within HGI48_RS04575 at 959.253 kb on - strand, within HGI48_RS04575 at 959.253 kb on - strand, within HGI48_RS04575 at 959.253 kb on - strand, within HGI48_RS04575 at 959.414 kb on + strand, within HGI48_RS04575 at 959.415 kb on - strand at 959.523 kb on + strand, within HGI48_RS04575 at 959.524 kb on - strand, within HGI48_RS04575 at 959.525 kb on + strand, within HGI48_RS04575 at 959.525 kb on + strand, within HGI48_RS04575 at 959.525 kb on + strand, within HGI48_RS04575 at 959.525 kb on + strand, within HGI48_RS04575 at 959.525 kb on + strand, within HGI48_RS04575 at 959.525 kb on + strand, within HGI48_RS04575 at 959.525 kb on + strand, within HGI48_RS04575 at 959.525 kb on + strand at 959.525 kb on + strand, within HGI48_RS04575 at 959.525 kb on + strand, within HGI48_RS04575 at 959.525 kb on + strand, within HGI48_RS04575 at 959.526 kb on - strand, within HGI48_RS04575 at 959.526 kb on - strand, within HGI48_RS04575 at 959.526 kb on - strand, within HGI48_RS04575 at 959.526 kb on - strand, within HGI48_RS04575 at 959.526 kb on - strand, within HGI48_RS04575 at 959.526 kb on - strand, within HGI48_RS04575 at 959.526 kb on - strand, within HGI48_RS04575 at 959.534 kb on + strand, within HGI48_RS04575 at 959.591 kb on + strand, within HGI48_RS04575 at 959.592 kb on - strand, within HGI48_RS04575 at 959.757 kb on + strand, within HGI48_RS04575 at 959.761 kb on - strand, within HGI48_RS04575 at 959.868 kb on + strand, within HGI48_RS04575 at 959.868 kb on + strand, within HGI48_RS04575 at 959.941 kb on + strand at 959.941 kb on + strand at 959.942 kb on - strand at 959.942 kb on - strand at 959.957 kb on + strand at 959.958 kb on - strand at 960.005 kb on - strand at 960.005 kb on - strand at 960.005 kb on - strand at 960.094 kb on + strand, within HGI48_RS04580 at 960.094 kb on + strand, within HGI48_RS04580 at 960.094 kb on + strand, within HGI48_RS04580 at 960.094 kb on + strand, within HGI48_RS04580 at 960.094 kb on + strand, within HGI48_RS04580 at 960.095 kb on - strand, within HGI48_RS04580 at 960.095 kb on - strand, within HGI48_RS04580 at 960.095 kb on - strand, within HGI48_RS04580 at 960.095 kb on - strand at 960.095 kb on - strand, within HGI48_RS04580 at 960.095 kb on - strand, within HGI48_RS04580 at 960.095 kb on - strand, within HGI48_RS04580 at 960.095 kb on - strand, within HGI48_RS04580 at 960.095 kb on - strand, within HGI48_RS04580 at 960.098 kb on + strand, within HGI48_RS04580 at 960.098 kb on + strand, within HGI48_RS04580 at 960.098 kb on + strand at 960.098 kb on + strand, within HGI48_RS04580 at 960.098 kb on + strand, within HGI48_RS04580 at 960.098 kb on + strand, within HGI48_RS04580 at 960.098 kb on + strand, within HGI48_RS04580 at 960.098 kb on + strand, within HGI48_RS04580 at 960.098 kb on + strand, within HGI48_RS04580 at 960.098 kb on + strand at 960.098 kb on + strand at 960.099 kb on - strand, within HGI48_RS04580 at 960.099 kb on - strand, within HGI48_RS04580 at 960.099 kb on - strand, within HGI48_RS04580 at 960.099 kb on - strand, within HGI48_RS04580 at 960.099 kb on - strand, within HGI48_RS04580 at 960.099 kb on - strand, within HGI48_RS04580 at 960.099 kb on - strand, within HGI48_RS04580 at 960.100 kb on + strand, within HGI48_RS04580 at 960.100 kb on + strand at 960.100 kb on + strand, within HGI48_RS04580 at 960.100 kb on + strand, within HGI48_RS04580 at 960.100 kb on + strand, within HGI48_RS04580 at 960.100 kb on + strand, within HGI48_RS04580 at 960.100 kb on + strand, within HGI48_RS04580 at 960.101 kb on - strand, within HGI48_RS04580 at 960.101 kb on - strand, within HGI48_RS04580 at 960.101 kb on - strand, within HGI48_RS04580 at 960.101 kb on - strand, within HGI48_RS04580 at 960.101 kb on - strand, within HGI48_RS04580 at 960.238 kb on + strand, within HGI48_RS04580 at 960.238 kb on + strand, within HGI48_RS04580 at 960.238 kb on + strand, within HGI48_RS04580 at 960.239 kb on - strand, within HGI48_RS04580 at 960.327 kb on - strand, within HGI48_RS04580 at 960.327 kb on - strand, within HGI48_RS04580 at 960.440 kb on + strand, within HGI48_RS04580 at 960.440 kb on + strand, within HGI48_RS04580 at 960.718 kb on + strand, within HGI48_RS04580 at 960.739 kb on + strand, within HGI48_RS04580 at 960.740 kb on - strand, within HGI48_RS04580 at 960.899 kb on + strand at 960.900 kb on - strand at 960.900 kb on - strand at 960.900 kb on - strand at 960.907 kb on + strand at 960.908 kb on - strand at 960.908 kb on - strand at 960.984 kb on - strand at 960.984 kb on - strand at 960.984 kb on - strand at 961.079 kb on + strand, within HGI48_RS04585 at 961.080 kb on - strand, within HGI48_RS04585 at 961.178 kb on + strand, within HGI48_RS04585 at 961.178 kb on + strand, within HGI48_RS04585 at 961.178 kb on + strand at 961.178 kb on + strand, within HGI48_RS04585 at 961.178 kb on + strand at 961.299 kb on + strand, within HGI48_RS04585 at 961.415 kb on + strand, within HGI48_RS04585 at 961.415 kb on + strand, within HGI48_RS04585 at 961.415 kb on + strand, within HGI48_RS04585 at 961.415 kb on + strand, within HGI48_RS04585 at 961.415 kb on + strand, within HGI48_RS04585 at 961.416 kb on - strand, within HGI48_RS04585 at 961.416 kb on - strand, within HGI48_RS04585 at 961.416 kb on - strand, within HGI48_RS04585 at 961.416 kb on - strand at 961.475 kb on - strand, within HGI48_RS04585 at 961.475 kb on - strand at 961.700 kb on + strand, within HGI48_RS04585 at 961.739 kb on + strand, within HGI48_RS04585 at 961.740 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 959,117 - +1.3 959,117 - +1.0 959,117 - -1.8 959,117 - -0.6 959,122 + -0.2 959,122 + +4.3 959,122 + +0.6 959,122 + -1.8 959,123 - +1.3 959,123 - -0.8 959,123 - -1.6 959,144 + -0.2 959,144 + -0.7 959,144 + -0.1 959,144 + +0.9 959,144 + -0.1 959,145 - +0.3 959,145 - +0.0 959,145 - +0.0 959,177 + -0.6 959,177 + +1.0 959,178 - -0.2 959,178 - +0.0 959,178 - -2.2 959,178 - -1.2 959,178 - +1.8 959,178 - -0.4 959,252 + HGI48_RS04575 0.13 -2.3 959,252 + HGI48_RS04575 0.13 -0.4 959,252 + HGI48_RS04575 0.13 -2.0 959,253 - HGI48_RS04575 0.13 +1.0 959,253 - HGI48_RS04575 0.13 -0.8 959,253 - HGI48_RS04575 0.13 -0.1 959,253 - HGI48_RS04575 0.13 -0.2 959,414 + HGI48_RS04575 0.33 -0.4 959,415 - +2.2 959,523 + HGI48_RS04575 0.46 -1.3 959,524 - HGI48_RS04575 0.46 +0.2 959,525 + HGI48_RS04575 0.46 -1.5 959,525 + HGI48_RS04575 0.46 -0.4 959,525 + HGI48_RS04575 0.46 +1.0 959,525 + HGI48_RS04575 0.46 +0.0 959,525 + HGI48_RS04575 0.46 +0.8 959,525 + HGI48_RS04575 0.46 -0.8 959,525 + HGI48_RS04575 0.46 -1.0 959,525 + +0.0 959,525 + HGI48_RS04575 0.46 +0.1 959,525 + HGI48_RS04575 0.46 -1.7 959,525 + HGI48_RS04575 0.46 -0.7 959,526 - HGI48_RS04575 0.46 +0.8 959,526 - HGI48_RS04575 0.46 -0.4 959,526 - HGI48_RS04575 0.46 -1.8 959,526 - HGI48_RS04575 0.46 -1.3 959,526 - HGI48_RS04575 0.46 -1.2 959,526 - HGI48_RS04575 0.46 -1.3 959,526 - HGI48_RS04575 0.46 -2.0 959,534 + HGI48_RS04575 0.47 -1.2 959,591 + HGI48_RS04575 0.54 -1.8 959,592 - HGI48_RS04575 0.54 +0.2 959,757 + HGI48_RS04575 0.74 +0.0 959,761 - HGI48_RS04575 0.75 +1.6 959,868 + HGI48_RS04575 0.88 +0.4 959,868 + HGI48_RS04575 0.88 -2.3 959,941 + -2.6 959,941 + -0.8 959,942 - +1.0 959,942 - -2.6 959,957 + -0.7 959,958 - -1.8 960,005 - +0.3 960,005 - -1.4 960,005 - -2.7 960,094 + HGI48_RS04580 0.15 -0.5 960,094 + HGI48_RS04580 0.15 -0.4 960,094 + HGI48_RS04580 0.15 +0.3 960,094 + HGI48_RS04580 0.15 +0.6 960,094 + HGI48_RS04580 0.15 -2.2 960,095 - HGI48_RS04580 0.15 -0.3 960,095 - HGI48_RS04580 0.15 -0.4 960,095 - HGI48_RS04580 0.15 -1.7 960,095 - +1.0 960,095 - HGI48_RS04580 0.15 -1.3 960,095 - HGI48_RS04580 0.15 +0.0 960,095 - HGI48_RS04580 0.15 -0.2 960,095 - HGI48_RS04580 0.15 +0.2 960,095 - HGI48_RS04580 0.15 -0.9 960,098 + HGI48_RS04580 0.15 -1.2 960,098 + HGI48_RS04580 0.15 +0.1 960,098 + -0.6 960,098 + HGI48_RS04580 0.15 +0.6 960,098 + HGI48_RS04580 0.15 +0.7 960,098 + HGI48_RS04580 0.15 -1.4 960,098 + HGI48_RS04580 0.15 -0.2 960,098 + HGI48_RS04580 0.15 -0.6 960,098 + HGI48_RS04580 0.15 -0.6 960,098 + +0.0 960,098 + -0.6 960,099 - HGI48_RS04580 0.15 +0.6 960,099 - HGI48_RS04580 0.15 -1.1 960,099 - HGI48_RS04580 0.15 -1.7 960,099 - HGI48_RS04580 0.15 -0.6 960,099 - HGI48_RS04580 0.15 +0.0 960,099 - HGI48_RS04580 0.15 -1.0 960,099 - HGI48_RS04580 0.15 -1.2 960,100 + HGI48_RS04580 0.15 -0.6 960,100 + +1.0 960,100 + HGI48_RS04580 0.15 +1.3 960,100 + HGI48_RS04580 0.15 +0.3 960,100 + HGI48_RS04580 0.15 -1.6 960,100 + HGI48_RS04580 0.15 -1.3 960,100 + HGI48_RS04580 0.15 -0.6 960,101 - HGI48_RS04580 0.15 -0.1 960,101 - HGI48_RS04580 0.15 -1.6 960,101 - HGI48_RS04580 0.15 -1.8 960,101 - HGI48_RS04580 0.15 -0.3 960,101 - HGI48_RS04580 0.15 -1.3 960,238 + HGI48_RS04580 0.31 +0.0 960,238 + HGI48_RS04580 0.31 -0.8 960,238 + HGI48_RS04580 0.31 -2.2 960,239 - HGI48_RS04580 0.31 -1.3 960,327 - HGI48_RS04580 0.41 -0.9 960,327 - HGI48_RS04580 0.41 -1.5 960,440 + HGI48_RS04580 0.54 -3.0 960,440 + HGI48_RS04580 0.54 -2.0 960,718 + HGI48_RS04580 0.86 -0.6 960,739 + HGI48_RS04580 0.88 +0.6 960,740 - HGI48_RS04580 0.89 -1.6 960,899 + -0.3 960,900 - +0.3 960,900 - -0.3 960,900 - +0.7 960,907 + -1.0 960,908 - -0.6 960,908 - -0.6 960,984 - -0.4 960,984 - -1.0 960,984 - -1.3 961,079 + HGI48_RS04585 0.14 -0.8 961,080 - HGI48_RS04585 0.14 +0.3 961,178 + HGI48_RS04585 0.22 -1.0 961,178 + HGI48_RS04585 0.22 -1.3 961,178 + +1.0 961,178 + HGI48_RS04585 0.22 +1.2 961,178 + +0.0 961,299 + HGI48_RS04585 0.31 -1.0 961,415 + HGI48_RS04585 0.40 -2.0 961,415 + HGI48_RS04585 0.40 -1.3 961,415 + HGI48_RS04585 0.40 -1.2 961,415 + HGI48_RS04585 0.40 -1.8 961,415 + HGI48_RS04585 0.40 +0.1 961,416 - HGI48_RS04585 0.40 -0.6 961,416 - HGI48_RS04585 0.40 -0.3 961,416 - HGI48_RS04585 0.40 +1.3 961,416 - +1.7 961,475 - HGI48_RS04585 0.45 -1.6 961,475 - +1.0 961,700 + HGI48_RS04585 0.62 -0.6 961,739 + HGI48_RS04585 0.65 -1.4 961,740 - +1.4
Or see this region's nucleotide sequence