Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03395

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03390 and HGI48_RS03395 are separated by 30 nucleotidesHGI48_RS03395 and HGI48_RS03400 are separated by 131 nucleotides HGI48_RS03390: HGI48_RS03390 - glycine cleavage system aminomethyltransferase GcvT, at 711,990 to 713,090 _RS03390 HGI48_RS03395: HGI48_RS03395 - glycine cleavage system protein GcvH, at 713,121 to 713,528 _RS03395 HGI48_RS03400: HGI48_RS03400 - aminomethyl-transferring glycine dehydrogenase, at 713,660 to 716,533 _RS03400 Position (kb) 713 714Strain fitness (log2 ratio) -2 -1 0 1at 712.191 kb on + strand, within HGI48_RS03390at 712.242 kb on + strand, within HGI48_RS03390at 712.243 kb on - strandat 712.243 kb on - strand, within HGI48_RS03390at 712.243 kb on - strand, within HGI48_RS03390at 712.276 kb on + strand, within HGI48_RS03390at 712.277 kb on - strand, within HGI48_RS03390at 712.277 kb on - strandat 712.294 kb on - strand, within HGI48_RS03390at 712.312 kb on - strand, within HGI48_RS03390at 712.312 kb on - strand, within HGI48_RS03390at 712.386 kb on - strand, within HGI48_RS03390at 712.386 kb on - strand, within HGI48_RS03390at 712.386 kb on - strand, within HGI48_RS03390at 712.386 kb on - strand, within HGI48_RS03390at 712.554 kb on + strand, within HGI48_RS03390at 712.555 kb on - strand, within HGI48_RS03390at 712.555 kb on - strand, within HGI48_RS03390at 712.555 kb on - strand, within HGI48_RS03390at 712.555 kb on - strand, within HGI48_RS03390at 712.556 kb on + strand, within HGI48_RS03390at 712.556 kb on + strand, within HGI48_RS03390at 712.557 kb on - strand, within HGI48_RS03390at 712.696 kb on - strand, within HGI48_RS03390at 713.148 kb on + strandat 713.148 kb on + strandat 713.148 kb on + strandat 713.148 kb on + strandat 713.148 kb on + strandat 713.148 kb on + strandat 713.149 kb on - strandat 713.149 kb on - strandat 713.149 kb on - strandat 713.149 kb on - strandat 713.150 kb on + strandat 713.150 kb on + strandat 713.150 kb on + strandat 713.150 kb on + strandat 713.150 kb on + strandat 713.151 kb on - strandat 713.151 kb on - strandat 713.193 kb on + strand, within HGI48_RS03395at 713.247 kb on - strand, within HGI48_RS03395at 713.331 kb on + strand, within HGI48_RS03395at 713.331 kb on + strand, within HGI48_RS03395at 713.331 kb on + strand, within HGI48_RS03395at 713.331 kb on + strand, within HGI48_RS03395at 713.332 kb on - strand, within HGI48_RS03395at 713.332 kb on - strand, within HGI48_RS03395at 713.332 kb on - strand, within HGI48_RS03395at 713.332 kb on - strand, within HGI48_RS03395at 713.526 kb on + strandat 713.527 kb on - strandat 713.527 kb on - strandat 713.566 kb on + strandat 713.566 kb on + strandat 713.566 kb on + strandat 713.566 kb on + strandat 713.566 kb on + strandat 713.567 kb on - strandat 713.638 kb on + strandat 713.639 kb on - strandat 713.639 kb on - strandat 713.909 kb on + strandat 713.909 kb on + strandat 713.909 kb on + strandat 713.910 kb on - strandat 713.910 kb on - strandat 713.984 kb on + strand, within HGI48_RS03400at 713.984 kb on + strandat 713.985 kb on - strand, within HGI48_RS03400at 713.985 kb on - strand, within HGI48_RS03400at 713.987 kb on - strand, within HGI48_RS03400at 713.993 kb on + strandat 713.995 kb on + strand, within HGI48_RS03400at 713.996 kb on - strand, within HGI48_RS03400at 714.280 kb on + strand, within HGI48_RS03400at 714.281 kb on - strand, within HGI48_RS03400at 714.281 kb on - strand, within HGI48_RS03400at 714.284 kb on + strandat 714.285 kb on - strand, within HGI48_RS03400at 714.285 kb on - strand, within HGI48_RS03400at 714.285 kb on - strand, within HGI48_RS03400at 714.285 kb on - strand, within HGI48_RS03400

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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712,191 + HGI48_RS03390 0.18 -0.6
712,242 + HGI48_RS03390 0.23 -2.5
712,243 - +0.5
712,243 - HGI48_RS03390 0.23 -1.2
712,243 - HGI48_RS03390 0.23 -2.4
712,276 + HGI48_RS03390 0.26 -2.6
712,277 - HGI48_RS03390 0.26 -1.2
712,277 - +0.5
712,294 - HGI48_RS03390 0.28 -0.8
712,312 - HGI48_RS03390 0.29 -1.2
712,312 - HGI48_RS03390 0.29 +0.6
712,386 - HGI48_RS03390 0.36 -0.5
712,386 - HGI48_RS03390 0.36 -0.8
712,386 - HGI48_RS03390 0.36 -1.2
712,386 - HGI48_RS03390 0.36 -0.9
712,554 + HGI48_RS03390 0.51 -1.4
712,555 - HGI48_RS03390 0.51 -0.5
712,555 - HGI48_RS03390 0.51 -1.2
712,555 - HGI48_RS03390 0.51 -0.9
712,555 - HGI48_RS03390 0.51 -0.4
712,556 + HGI48_RS03390 0.51 -1.8
712,556 + HGI48_RS03390 0.51 +1.4
712,557 - HGI48_RS03390 0.51 -1.5
712,696 - HGI48_RS03390 0.64 -2.6
713,148 + +0.3
713,148 + +0.1
713,148 + -1.9
713,148 + -1.5
713,148 + -1.0
713,148 + -1.5
713,149 - -0.5
713,149 - -1.7
713,149 - +0.5
713,149 - -1.2
713,150 + -0.2
713,150 + -1.2
713,150 + -2.1
713,150 + +1.1
713,150 + -0.5
713,151 - +0.1
713,151 - +0.1
713,193 + HGI48_RS03395 0.18 +0.4
713,247 - HGI48_RS03395 0.31 +1.1
713,331 + HGI48_RS03395 0.51 -0.4
713,331 + HGI48_RS03395 0.51 -0.6
713,331 + HGI48_RS03395 0.51 -0.9
713,331 + HGI48_RS03395 0.51 -0.7
713,332 - HGI48_RS03395 0.52 -1.6
713,332 - HGI48_RS03395 0.52 -1.9
713,332 - HGI48_RS03395 0.52 -1.5
713,332 - HGI48_RS03395 0.52 -2.6
713,526 + -1.5
713,527 - -1.6
713,527 - -2.1
713,566 + -0.2
713,566 + -1.5
713,566 + +0.1
713,566 + +1.6
713,566 + +1.1
713,567 - -2.2
713,638 + +0.4
713,639 - -2.3
713,639 - +0.1
713,909 + +1.5
713,909 + -0.3
713,909 + +0.6
713,910 - -0.4
713,910 - -0.7
713,984 + HGI48_RS03400 0.11 +0.4
713,984 + -0.5
713,985 - HGI48_RS03400 0.11 +1.7
713,985 - HGI48_RS03400 0.11 -2.7
713,987 - HGI48_RS03400 0.11 +0.8
713,993 + +1.5
713,995 + HGI48_RS03400 0.12 -0.0
713,996 - HGI48_RS03400 0.12 -1.7
714,280 + HGI48_RS03400 0.22 -0.1
714,281 - HGI48_RS03400 0.22 +0.8
714,281 - HGI48_RS03400 0.22 -0.5
714,284 + +0.5
714,285 - HGI48_RS03400 0.22 -0.9
714,285 - HGI48_RS03400 0.22 -1.4
714,285 - HGI48_RS03400 0.22 -0.8
714,285 - HGI48_RS03400 0.22 +0.1

Or see this region's nucleotide sequence