Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00890

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00885 and HGI48_RS00890 are separated by 188 nucleotidesHGI48_RS00890 and HGI48_RS00895 are separated by 134 nucleotidesHGI48_RS00895 and HGI48_RS00900 are separated by 13 nucleotides HGI48_RS00885: HGI48_RS00885 - argininosuccinate lyase, at 202,858 to 204,231 _RS00885 HGI48_RS00890: HGI48_RS00890 - DNA recombination protein RmuC, at 204,420 to 205,952 _RS00890 HGI48_RS00895: HGI48_RS00895 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 206,087 to 206,842 _RS00895 HGI48_RS00900: HGI48_RS00900 - SCP2 domain-containing protein, at 206,856 to 207,464 _RS00900 Position (kb) 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 203.475 kb on + strand, within HGI48_RS00885at 203.676 kb on + strand, within HGI48_RS00885at 203.677 kb on - strand, within HGI48_RS00885at 203.806 kb on + strand, within HGI48_RS00885at 203.806 kb on + strand, within HGI48_RS00885at 203.806 kb on + strand, within HGI48_RS00885at 203.817 kb on + strand, within HGI48_RS00885at 203.817 kb on + strand, within HGI48_RS00885at 203.817 kb on + strand, within HGI48_RS00885at 203.817 kb on + strand, within HGI48_RS00885at 203.818 kb on - strand, within HGI48_RS00885at 203.818 kb on - strand, within HGI48_RS00885at 203.818 kb on - strand, within HGI48_RS00885at 203.818 kb on - strand, within HGI48_RS00885at 203.818 kb on - strand, within HGI48_RS00885at 203.974 kb on + strand, within HGI48_RS00885at 203.974 kb on + strandat 204.054 kb on + strand, within HGI48_RS00885at 204.104 kb on + strandat 204.105 kb on - strandat 204.229 kb on + strandat 204.230 kb on - strandat 204.242 kb on - strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.366 kb on + strandat 204.367 kb on - strandat 204.367 kb on - strandat 204.368 kb on + strandat 204.368 kb on + strandat 204.368 kb on + strandat 204.368 kb on + strandat 204.368 kb on + strandat 204.368 kb on + strandat 204.369 kb on - strandat 204.369 kb on - strandat 204.369 kb on - strandat 204.369 kb on - strandat 204.382 kb on - strandat 204.396 kb on + strandat 204.396 kb on + strandat 204.399 kb on + strandat 204.399 kb on + strandat 204.399 kb on + strandat 204.400 kb on - strandat 204.400 kb on - strandat 204.426 kb on - strandat 204.439 kb on - strandat 204.532 kb on + strandat 204.533 kb on - strandat 204.533 kb on - strandat 204.533 kb on - strandat 204.697 kb on + strand, within HGI48_RS00890at 204.719 kb on + strand, within HGI48_RS00890at 204.720 kb on - strand, within HGI48_RS00890at 204.935 kb on + strand, within HGI48_RS00890at 204.935 kb on + strand, within HGI48_RS00890at 204.935 kb on + strand, within HGI48_RS00890at 204.936 kb on - strand, within HGI48_RS00890at 205.153 kb on + strand, within HGI48_RS00890at 205.154 kb on - strand, within HGI48_RS00890at 205.197 kb on + strand, within HGI48_RS00890at 205.197 kb on + strand, within HGI48_RS00890at 205.197 kb on + strand, within HGI48_RS00890at 205.198 kb on - strand, within HGI48_RS00890at 205.198 kb on - strand, within HGI48_RS00890at 205.198 kb on - strand, within HGI48_RS00890at 205.198 kb on - strand, within HGI48_RS00890at 205.198 kb on - strand, within HGI48_RS00890at 205.252 kb on + strandat 205.252 kb on + strand, within HGI48_RS00890at 205.252 kb on + strand, within HGI48_RS00890at 205.252 kb on + strand, within HGI48_RS00890at 205.253 kb on - strand, within HGI48_RS00890at 205.253 kb on - strand, within HGI48_RS00890at 205.253 kb on - strand, within HGI48_RS00890at 205.253 kb on - strand, within HGI48_RS00890at 205.364 kb on - strandat 205.382 kb on + strandat 205.452 kb on + strand, within HGI48_RS00890at 205.452 kb on + strand, within HGI48_RS00890at 205.452 kb on + strand, within HGI48_RS00890at 205.452 kb on + strand, within HGI48_RS00890at 205.453 kb on - strand, within HGI48_RS00890at 205.453 kb on - strand, within HGI48_RS00890at 205.453 kb on - strand, within HGI48_RS00890at 205.453 kb on - strand, within HGI48_RS00890at 205.456 kb on + strand, within HGI48_RS00890at 205.456 kb on + strand, within HGI48_RS00890at 205.456 kb on + strandat 205.456 kb on + strand, within HGI48_RS00890at 205.456 kb on + strand, within HGI48_RS00890at 205.456 kb on + strandat 205.457 kb on - strandat 205.457 kb on - strand, within HGI48_RS00890at 205.457 kb on - strand, within HGI48_RS00890at 205.457 kb on - strand, within HGI48_RS00890at 205.457 kb on - strand, within HGI48_RS00890at 205.457 kb on - strand, within HGI48_RS00890at 205.457 kb on - strand, within HGI48_RS00890at 205.457 kb on - strandat 205.457 kb on - strand, within HGI48_RS00890at 205.457 kb on - strand, within HGI48_RS00890at 205.457 kb on - strand, within HGI48_RS00890at 205.457 kb on - strand, within HGI48_RS00890at 205.531 kb on + strand, within HGI48_RS00890at 205.531 kb on + strand, within HGI48_RS00890at 205.531 kb on + strand, within HGI48_RS00890at 205.531 kb on + strand, within HGI48_RS00890at 205.531 kb on + strand, within HGI48_RS00890at 205.532 kb on - strand, within HGI48_RS00890at 205.532 kb on - strand, within HGI48_RS00890at 205.532 kb on - strand, within HGI48_RS00890at 205.538 kb on + strand, within HGI48_RS00890at 205.538 kb on + strand, within HGI48_RS00890at 205.538 kb on + strand, within HGI48_RS00890at 205.538 kb on + strand, within HGI48_RS00890at 205.539 kb on - strand, within HGI48_RS00890at 205.539 kb on - strand, within HGI48_RS00890at 205.539 kb on - strand, within HGI48_RS00890at 205.539 kb on - strand, within HGI48_RS00890at 205.539 kb on - strand, within HGI48_RS00890at 205.541 kb on + strand, within HGI48_RS00890at 205.541 kb on + strand, within HGI48_RS00890at 205.541 kb on + strand, within HGI48_RS00890at 205.541 kb on + strand, within HGI48_RS00890at 205.541 kb on + strandat 205.541 kb on + strand, within HGI48_RS00890at 205.541 kb on + strandat 205.541 kb on + strand, within HGI48_RS00890at 205.542 kb on - strand, within HGI48_RS00890at 205.542 kb on - strand, within HGI48_RS00890at 205.542 kb on - strand, within HGI48_RS00890at 205.542 kb on - strand, within HGI48_RS00890at 205.542 kb on - strand, within HGI48_RS00890at 205.544 kb on + strand, within HGI48_RS00890at 205.544 kb on + strand, within HGI48_RS00890at 205.544 kb on + strand, within HGI48_RS00890at 205.544 kb on + strand, within HGI48_RS00890at 205.544 kb on + strand, within HGI48_RS00890at 205.545 kb on - strand, within HGI48_RS00890at 205.545 kb on - strand, within HGI48_RS00890at 205.545 kb on - strand, within HGI48_RS00890at 205.573 kb on + strand, within HGI48_RS00890at 205.659 kb on + strand, within HGI48_RS00890at 205.659 kb on + strand, within HGI48_RS00890at 205.660 kb on - strand, within HGI48_RS00890at 205.660 kb on - strand, within HGI48_RS00890at 205.863 kb on + strandat 205.863 kb on + strandat 205.863 kb on + strandat 205.863 kb on + strandat 205.863 kb on + strandat 205.864 kb on - strandat 205.878 kb on - strandat 205.948 kb on + strandat 206.014 kb on + strandat 206.015 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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203,475 + HGI48_RS00885 0.45 -0.7
203,676 + HGI48_RS00885 0.60 +3.3
203,677 - HGI48_RS00885 0.60 +0.5
203,806 + HGI48_RS00885 0.69 -2.0
203,806 + HGI48_RS00885 0.69 -0.6
203,806 + HGI48_RS00885 0.69 +0.7
203,817 + HGI48_RS00885 0.70 -1.0
203,817 + HGI48_RS00885 0.70 +1.0
203,817 + HGI48_RS00885 0.70 -1.7
203,817 + HGI48_RS00885 0.70 -0.6
203,818 - HGI48_RS00885 0.70 -3.0
203,818 - HGI48_RS00885 0.70 -1.2
203,818 - HGI48_RS00885 0.70 -0.7
203,818 - HGI48_RS00885 0.70 -0.0
203,818 - HGI48_RS00885 0.70 -0.4
203,974 + HGI48_RS00885 0.81 -2.3
203,974 + -0.3
204,054 + HGI48_RS00885 0.87 -0.7
204,104 + -1.7
204,105 - -0.3
204,229 + -1.3
204,230 - +1.4
204,242 - +0.5
204,366 + +0.1
204,366 + -0.3
204,366 + -1.7
204,366 + -1.0
204,366 + -0.7
204,366 + -0.3
204,366 + +0.9
204,367 - -1.5
204,367 - +0.3
204,368 + +1.3
204,368 + +1.0
204,368 + +0.8
204,368 + -0.3
204,368 + -1.4
204,368 + -0.3
204,369 - +0.5
204,369 - +0.9
204,369 - -2.6
204,369 - -1.0
204,382 - +0.3
204,396 + -0.1
204,396 + -1.3
204,399 + -1.9
204,399 + -0.5
204,399 + +1.3
204,400 - -0.5
204,400 - -1.6
204,426 - +0.1
204,439 - -1.7
204,532 + -0.4
204,533 - +0.5
204,533 - -0.6
204,533 - -1.3
204,697 + HGI48_RS00890 0.18 -1.0
204,719 + HGI48_RS00890 0.20 -0.7
204,720 - HGI48_RS00890 0.20 +1.2
204,935 + HGI48_RS00890 0.34 -0.9
204,935 + HGI48_RS00890 0.34 -0.7
204,935 + HGI48_RS00890 0.34 -0.3
204,936 - HGI48_RS00890 0.34 -0.1
205,153 + HGI48_RS00890 0.48 -0.3
205,154 - HGI48_RS00890 0.48 -0.3
205,197 + HGI48_RS00890 0.51 -0.7
205,197 + HGI48_RS00890 0.51 -1.9
205,197 + HGI48_RS00890 0.51 -0.8
205,198 - HGI48_RS00890 0.51 +1.3
205,198 - HGI48_RS00890 0.51 -0.7
205,198 - HGI48_RS00890 0.51 -1.0
205,198 - HGI48_RS00890 0.51 -0.6
205,198 - HGI48_RS00890 0.51 +0.9
205,252 + -0.3
205,252 + HGI48_RS00890 0.54 +0.3
205,252 + HGI48_RS00890 0.54 -0.5
205,252 + HGI48_RS00890 0.54 -0.3
205,253 - HGI48_RS00890 0.54 -0.5
205,253 - HGI48_RS00890 0.54 -0.7
205,253 - HGI48_RS00890 0.54 -1.4
205,253 - HGI48_RS00890 0.54 +1.6
205,364 - +0.3
205,382 + -0.3
205,452 + HGI48_RS00890 0.67 -2.0
205,452 + HGI48_RS00890 0.67 -0.2
205,452 + HGI48_RS00890 0.67 -1.3
205,452 + HGI48_RS00890 0.67 -1.2
205,453 - HGI48_RS00890 0.67 -0.1
205,453 - HGI48_RS00890 0.67 +0.5
205,453 - HGI48_RS00890 0.67 +0.5
205,453 - HGI48_RS00890 0.67 -1.3
205,456 + HGI48_RS00890 0.68 -1.6
205,456 + HGI48_RS00890 0.68 -0.7
205,456 + +1.7
205,456 + HGI48_RS00890 0.68 -1.3
205,456 + HGI48_RS00890 0.68 +1.7
205,456 + -0.3
205,457 - +0.7
205,457 - HGI48_RS00890 0.68 -1.7
205,457 - HGI48_RS00890 0.68 +0.1
205,457 - HGI48_RS00890 0.68 -1.0
205,457 - HGI48_RS00890 0.68 +0.0
205,457 - HGI48_RS00890 0.68 -1.0
205,457 - HGI48_RS00890 0.68 -1.3
205,457 - +1.3
205,457 - HGI48_RS00890 0.68 +0.7
205,457 - HGI48_RS00890 0.68 -0.1
205,457 - HGI48_RS00890 0.68 -1.5
205,457 - HGI48_RS00890 0.68 -0.7
205,531 + HGI48_RS00890 0.72 -1.0
205,531 + HGI48_RS00890 0.72 +0.3
205,531 + HGI48_RS00890 0.72 -0.3
205,531 + HGI48_RS00890 0.72 -0.4
205,531 + HGI48_RS00890 0.72 -0.0
205,532 - HGI48_RS00890 0.73 -0.8
205,532 - HGI48_RS00890 0.73 -2.4
205,532 - HGI48_RS00890 0.73 -0.0
205,538 + HGI48_RS00890 0.73 -1.2
205,538 + HGI48_RS00890 0.73 -1.5
205,538 + HGI48_RS00890 0.73 -1.7
205,538 + HGI48_RS00890 0.73 -1.0
205,539 - HGI48_RS00890 0.73 -0.7
205,539 - HGI48_RS00890 0.73 -1.3
205,539 - HGI48_RS00890 0.73 -1.7
205,539 - HGI48_RS00890 0.73 -1.7
205,539 - HGI48_RS00890 0.73 +0.9
205,541 + HGI48_RS00890 0.73 -0.7
205,541 + HGI48_RS00890 0.73 +1.0
205,541 + HGI48_RS00890 0.73 -1.3
205,541 + HGI48_RS00890 0.73 +1.5
205,541 + +1.9
205,541 + HGI48_RS00890 0.73 -1.3
205,541 + +1.9
205,541 + HGI48_RS00890 0.73 +0.1
205,542 - HGI48_RS00890 0.73 -1.2
205,542 - HGI48_RS00890 0.73 +0.3
205,542 - HGI48_RS00890 0.73 -0.8
205,542 - HGI48_RS00890 0.73 -0.0
205,542 - HGI48_RS00890 0.73 -0.5
205,544 + HGI48_RS00890 0.73 +0.5
205,544 + HGI48_RS00890 0.73 -0.5
205,544 + HGI48_RS00890 0.73 -1.3
205,544 + HGI48_RS00890 0.73 -1.7
205,544 + HGI48_RS00890 0.73 -1.0
205,545 - HGI48_RS00890 0.73 +1.3
205,545 - HGI48_RS00890 0.73 +0.7
205,545 - HGI48_RS00890 0.73 -0.0
205,573 + HGI48_RS00890 0.75 -1.0
205,659 + HGI48_RS00890 0.81 -0.7
205,659 + HGI48_RS00890 0.81 +0.3
205,660 - HGI48_RS00890 0.81 +1.5
205,660 - HGI48_RS00890 0.81 -3.0
205,863 + -0.0
205,863 + -0.9
205,863 + -1.2
205,863 + +0.3
205,863 + -0.5
205,864 - -1.5
205,878 - -2.0
205,948 + -1.7
206,014 + -2.0
206,015 - -2.0

Or see this region's nucleotide sequence