Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS20000 and HGI48_RS20005 are separated by 276 nucleotides HGI48_RS20005 and HGI48_RS20010 are separated by 151 nucleotides
HGI48_RS20000: HGI48_RS20000 - threonine export protein RhtC, at 4,470,704 to 4,471,327
_RS20000
HGI48_RS20005: HGI48_RS20005 - ATP-dependent DNA helicase RecQ, at 4,471,604 to 4,473,433
_RS20005
HGI48_RS20010: HGI48_RS20010 - phospholipase A, at 4,473,585 to 4,474,454
_RS20010
Position (kb) 4471
4472
4473
4474 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4470.630 kb on + strand at 4470.630 kb on + strand at 4470.631 kb on - strand at 4470.673 kb on + strand at 4470.676 kb on + strand at 4470.676 kb on + strand at 4470.676 kb on + strand at 4470.677 kb on - strand at 4470.682 kb on + strand at 4470.682 kb on + strand at 4470.683 kb on - strand at 4470.683 kb on - strand at 4470.715 kb on + strand at 4470.715 kb on + strand at 4470.716 kb on - strand at 4470.716 kb on - strand at 4470.933 kb on + strand, within HGI48_RS20000 at 4470.933 kb on + strand, within HGI48_RS20000 at 4471.086 kb on + strand, within HGI48_RS20000 at 4471.087 kb on - strand, within HGI48_RS20000 at 4471.087 kb on - strand, within HGI48_RS20000 at 4471.105 kb on + strand at 4471.106 kb on - strand, within HGI48_RS20000 at 4471.331 kb on + strand at 4471.331 kb on + strand at 4471.332 kb on - strand at 4471.332 kb on - strand at 4471.380 kb on - strand at 4471.380 kb on - strand at 4471.380 kb on - strand at 4471.380 kb on - strand at 4471.395 kb on + strand at 4471.396 kb on - strand at 4471.518 kb on - strand at 4471.524 kb on - strand at 4471.524 kb on - strand at 4471.524 kb on - strand at 4471.524 kb on - strand at 4471.524 kb on - strand at 4471.524 kb on - strand at 4471.527 kb on - strand at 4471.527 kb on - strand at 4471.527 kb on - strand at 4471.527 kb on - strand at 4471.645 kb on + strand at 4471.645 kb on + strand at 4471.646 kb on - strand at 4471.646 kb on - strand at 4471.724 kb on + strand at 4471.724 kb on + strand at 4471.725 kb on - strand at 4471.725 kb on - strand at 4471.768 kb on - strand at 4471.768 kb on - strand at 4471.802 kb on - strand, within HGI48_RS20005 at 4471.831 kb on + strand, within HGI48_RS20005 at 4471.839 kb on + strand, within HGI48_RS20005 at 4472.044 kb on + strand, within HGI48_RS20005 at 4472.045 kb on - strand, within HGI48_RS20005 at 4472.045 kb on - strand, within HGI48_RS20005 at 4472.045 kb on - strand, within HGI48_RS20005 at 4472.062 kb on - strand at 4472.133 kb on + strand, within HGI48_RS20005 at 4472.133 kb on + strand at 4472.134 kb on - strand at 4472.271 kb on + strand, within HGI48_RS20005 at 4472.272 kb on - strand, within HGI48_RS20005 at 4472.272 kb on - strand, within HGI48_RS20005 at 4472.416 kb on - strand, within HGI48_RS20005 at 4472.472 kb on + strand, within HGI48_RS20005 at 4472.473 kb on - strand, within HGI48_RS20005 at 4472.473 kb on - strand, within HGI48_RS20005 at 4472.475 kb on + strand at 4472.475 kb on + strand, within HGI48_RS20005 at 4472.475 kb on + strand, within HGI48_RS20005 at 4472.476 kb on - strand, within HGI48_RS20005 at 4472.476 kb on - strand, within HGI48_RS20005 at 4472.476 kb on - strand, within HGI48_RS20005 at 4472.524 kb on + strand, within HGI48_RS20005 at 4472.524 kb on + strand, within HGI48_RS20005 at 4472.525 kb on - strand at 4472.637 kb on + strand, within HGI48_RS20005 at 4472.709 kb on + strand, within HGI48_RS20005 at 4472.709 kb on + strand, within HGI48_RS20005 at 4472.710 kb on - strand, within HGI48_RS20005 at 4472.710 kb on - strand, within HGI48_RS20005 at 4472.710 kb on - strand at 4472.950 kb on - strand, within HGI48_RS20005 at 4473.075 kb on + strand, within HGI48_RS20005 at 4473.075 kb on + strand, within HGI48_RS20005 at 4473.075 kb on + strand, within HGI48_RS20005 at 4473.076 kb on - strand, within HGI48_RS20005 at 4473.076 kb on - strand at 4473.172 kb on - strand, within HGI48_RS20005 at 4473.172 kb on - strand, within HGI48_RS20005 at 4473.172 kb on - strand, within HGI48_RS20005 at 4473.211 kb on + strand, within HGI48_RS20005 at 4473.212 kb on - strand, within HGI48_RS20005 at 4473.366 kb on + strand at 4473.410 kb on - strand at 4473.416 kb on + strand at 4473.416 kb on + strand at 4473.417 kb on - strand at 4473.417 kb on - strand at 4473.417 kb on - strand at 4473.428 kb on - strand at 4473.454 kb on - strand at 4473.474 kb on + strand at 4473.475 kb on - strand at 4473.506 kb on + strand at 4473.586 kb on + strand at 4473.586 kb on + strand at 4473.586 kb on + strand at 4473.587 kb on - strand at 4473.587 kb on - strand at 4473.587 kb on - strand at 4473.587 kb on - strand at 4473.587 kb on - strand at 4473.587 kb on - strand at 4473.593 kb on + strand at 4473.593 kb on + strand at 4473.594 kb on - strand at 4473.594 kb on - strand at 4473.594 kb on - strand at 4473.594 kb on - strand at 4473.640 kb on + strand at 4473.640 kb on + strand at 4473.641 kb on - strand at 4473.641 kb on - strand at 4473.641 kb on - strand at 4473.641 kb on - strand at 4473.661 kb on + strand at 4473.672 kb on + strand, within HGI48_RS20010 at 4473.672 kb on + strand, within HGI48_RS20010 at 4473.673 kb on - strand at 4473.673 kb on - strand, within HGI48_RS20010 at 4473.673 kb on - strand, within HGI48_RS20010 at 4473.673 kb on - strand, within HGI48_RS20010 at 4473.752 kb on + strand, within HGI48_RS20010 at 4473.752 kb on + strand, within HGI48_RS20010 at 4473.752 kb on + strand, within HGI48_RS20010 at 4473.752 kb on + strand, within HGI48_RS20010 at 4473.752 kb on + strand, within HGI48_RS20010 at 4473.752 kb on + strand, within HGI48_RS20010 at 4473.752 kb on + strand at 4473.753 kb on - strand, within HGI48_RS20010 at 4473.753 kb on - strand, within HGI48_RS20010 at 4473.753 kb on - strand, within HGI48_RS20010 at 4473.753 kb on - strand, within HGI48_RS20010 at 4473.753 kb on - strand, within HGI48_RS20010 at 4473.754 kb on + strand, within HGI48_RS20010 at 4473.754 kb on + strand, within HGI48_RS20010 at 4473.754 kb on + strand, within HGI48_RS20010 at 4473.754 kb on + strand, within HGI48_RS20010 at 4473.755 kb on - strand, within HGI48_RS20010 at 4473.755 kb on - strand, within HGI48_RS20010 at 4473.779 kb on + strand, within HGI48_RS20010 at 4473.780 kb on - strand, within HGI48_RS20010 at 4473.793 kb on + strand, within HGI48_RS20010 at 4473.823 kb on + strand, within HGI48_RS20010 at 4473.824 kb on - strand, within HGI48_RS20010 at 4473.922 kb on + strand, within HGI48_RS20010 at 4473.922 kb on + strand, within HGI48_RS20010 at 4473.922 kb on + strand, within HGI48_RS20010 at 4473.923 kb on - strand, within HGI48_RS20010 at 4473.923 kb on - strand, within HGI48_RS20010 at 4473.999 kb on + strand, within HGI48_RS20010 at 4474.057 kb on + strand, within HGI48_RS20010 at 4474.057 kb on + strand, within HGI48_RS20010 at 4474.058 kb on - strand, within HGI48_RS20010 at 4474.123 kb on + strand, within HGI48_RS20010 at 4474.123 kb on + strand, within HGI48_RS20010 at 4474.123 kb on + strand at 4474.124 kb on - strand, within HGI48_RS20010 at 4474.124 kb on - strand, within HGI48_RS20010 at 4474.124 kb on - strand, within HGI48_RS20010 at 4474.124 kb on - strand, within HGI48_RS20010 at 4474.232 kb on - strand, within HGI48_RS20010 at 4474.251 kb on - strand, within HGI48_RS20010 at 4474.267 kb on + strand at 4474.267 kb on + strand, within HGI48_RS20010 at 4474.268 kb on - strand, within HGI48_RS20010 at 4474.268 kb on - strand, within HGI48_RS20010 at 4474.268 kb on - strand, within HGI48_RS20010 at 4474.268 kb on - strand, within HGI48_RS20010 at 4474.268 kb on - strand, within HGI48_RS20010 at 4474.268 kb on - strand, within HGI48_RS20010 at 4474.273 kb on + strand, within HGI48_RS20010 at 4474.273 kb on + strand, within HGI48_RS20010 at 4474.273 kb on + strand, within HGI48_RS20010 at 4474.273 kb on + strand, within HGI48_RS20010 at 4474.273 kb on + strand, within HGI48_RS20010 at 4474.282 kb on + strand at 4474.283 kb on - strand, within HGI48_RS20010 at 4474.283 kb on - strand, within HGI48_RS20010 at 4474.283 kb on - strand, within HGI48_RS20010 at 4474.283 kb on - strand, within HGI48_RS20010 at 4474.294 kb on + strand, within HGI48_RS20010 at 4474.294 kb on + strand, within HGI48_RS20010 at 4474.301 kb on - strand, within HGI48_RS20010 at 4474.346 kb on + strand, within HGI48_RS20010 at 4474.346 kb on + strand, within HGI48_RS20010 at 4474.346 kb on + strand, within HGI48_RS20010 at 4474.347 kb on - strand, within HGI48_RS20010 at 4474.347 kb on - strand, within HGI48_RS20010
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,470,630 + +0.7 4,470,630 + +1.6 4,470,631 - +0.3 4,470,673 + +1.1 4,470,676 + -1.5 4,470,676 + -0.9 4,470,676 + +0.3 4,470,677 - +3.7 4,470,682 + +1.4 4,470,682 + +1.1 4,470,683 - -1.5 4,470,683 - +1.1 4,470,715 + -1.3 4,470,715 + +0.8 4,470,716 - -0.0 4,470,716 - -0.9 4,470,933 + HGI48_RS20000 0.37 +1.5 4,470,933 + HGI48_RS20000 0.37 -0.1 4,471,086 + HGI48_RS20000 0.61 -0.0 4,471,087 - HGI48_RS20000 0.61 -1.7 4,471,087 - HGI48_RS20000 0.61 +0.7 4,471,105 + +2.7 4,471,106 - HGI48_RS20000 0.64 +0.5 4,471,331 + -0.5 4,471,331 + +0.4 4,471,332 - -0.1 4,471,332 - -1.5 4,471,380 - -1.2 4,471,380 - -0.9 4,471,380 - -0.3 4,471,380 - +0.1 4,471,395 + +0.3 4,471,396 - -1.9 4,471,518 - -0.5 4,471,524 - -0.5 4,471,524 - -1.1 4,471,524 - -0.1 4,471,524 - +0.1 4,471,524 - +0.8 4,471,524 - -1.0 4,471,527 - +0.3 4,471,527 - +0.5 4,471,527 - +0.9 4,471,527 - -0.5 4,471,645 + +1.9 4,471,645 + +0.4 4,471,646 - +0.5 4,471,646 - -1.2 4,471,724 + +0.4 4,471,724 + +1.6 4,471,725 - +0.1 4,471,725 - -2.2 4,471,768 - -1.2 4,471,768 - +0.1 4,471,802 - HGI48_RS20005 0.11 -1.5 4,471,831 + HGI48_RS20005 0.12 +0.8 4,471,839 + HGI48_RS20005 0.13 -1.9 4,472,044 + HGI48_RS20005 0.24 +1.5 4,472,045 - HGI48_RS20005 0.24 -1.9 4,472,045 - HGI48_RS20005 0.24 +0.6 4,472,045 - HGI48_RS20005 0.24 -1.2 4,472,062 - -0.5 4,472,133 + HGI48_RS20005 0.29 -0.5 4,472,133 + -0.5 4,472,134 - +1.1 4,472,271 + HGI48_RS20005 0.36 +0.1 4,472,272 - HGI48_RS20005 0.37 -0.9 4,472,272 - HGI48_RS20005 0.37 +1.1 4,472,416 - HGI48_RS20005 0.44 -1.2 4,472,472 + HGI48_RS20005 0.47 +0.4 4,472,473 - HGI48_RS20005 0.47 -1.2 4,472,473 - HGI48_RS20005 0.47 +1.7 4,472,475 + +4.5 4,472,475 + HGI48_RS20005 0.48 +0.3 4,472,475 + HGI48_RS20005 0.48 -2.8 4,472,476 - HGI48_RS20005 0.48 +0.8 4,472,476 - HGI48_RS20005 0.48 -0.1 4,472,476 - HGI48_RS20005 0.48 +1.5 4,472,524 + HGI48_RS20005 0.50 +0.4 4,472,524 + HGI48_RS20005 0.50 -1.5 4,472,525 - -0.5 4,472,637 + HGI48_RS20005 0.56 -1.5 4,472,709 + HGI48_RS20005 0.60 -0.7 4,472,709 + HGI48_RS20005 0.60 +1.1 4,472,710 - HGI48_RS20005 0.60 +0.4 4,472,710 - HGI48_RS20005 0.60 +0.7 4,472,710 - -0.5 4,472,950 - HGI48_RS20005 0.74 -1.2 4,473,075 + HGI48_RS20005 0.80 -1.7 4,473,075 + HGI48_RS20005 0.80 +0.5 4,473,075 + HGI48_RS20005 0.80 -0.9 4,473,076 - HGI48_RS20005 0.80 -0.9 4,473,076 - +0.1 4,473,172 - HGI48_RS20005 0.86 +0.4 4,473,172 - HGI48_RS20005 0.86 -1.2 4,473,172 - HGI48_RS20005 0.86 -2.6 4,473,211 + HGI48_RS20005 0.88 +0.9 4,473,212 - HGI48_RS20005 0.88 +1.3 4,473,366 + -0.1 4,473,410 - -0.7 4,473,416 + -1.2 4,473,416 + +1.1 4,473,417 - -0.5 4,473,417 - -1.6 4,473,417 - -0.5 4,473,428 - -0.5 4,473,454 - -0.2 4,473,474 + -2.2 4,473,475 - -0.4 4,473,506 + -0.1 4,473,586 + -0.2 4,473,586 + +0.8 4,473,586 + +0.0 4,473,587 - +1.1 4,473,587 - +2.2 4,473,587 - -1.5 4,473,587 - -1.5 4,473,587 - -0.1 4,473,587 - +0.5 4,473,593 + -1.3 4,473,593 + -1.9 4,473,594 - -1.9 4,473,594 - -0.2 4,473,594 - +3.5 4,473,594 - +0.9 4,473,640 + -0.9 4,473,640 + +0.6 4,473,641 - -0.8 4,473,641 - +0.7 4,473,641 - -3.0 4,473,641 - -1.7 4,473,661 + +0.4 4,473,672 + HGI48_RS20010 0.10 -1.5 4,473,672 + HGI48_RS20010 0.10 -0.6 4,473,673 - +0.1 4,473,673 - HGI48_RS20010 0.10 +1.0 4,473,673 - HGI48_RS20010 0.10 -0.5 4,473,673 - HGI48_RS20010 0.10 -0.2 4,473,752 + HGI48_RS20010 0.19 +0.3 4,473,752 + HGI48_RS20010 0.19 -1.2 4,473,752 + HGI48_RS20010 0.19 -0.5 4,473,752 + HGI48_RS20010 0.19 -1.5 4,473,752 + HGI48_RS20010 0.19 -2.8 4,473,752 + HGI48_RS20010 0.19 -1.5 4,473,752 + +0.1 4,473,753 - HGI48_RS20010 0.19 -1.2 4,473,753 - HGI48_RS20010 0.19 -2.2 4,473,753 - HGI48_RS20010 0.19 -1.3 4,473,753 - HGI48_RS20010 0.19 -0.2 4,473,753 - HGI48_RS20010 0.19 +1.1 4,473,754 + HGI48_RS20010 0.19 -1.2 4,473,754 + HGI48_RS20010 0.19 +1.3 4,473,754 + HGI48_RS20010 0.19 +1.1 4,473,754 + HGI48_RS20010 0.19 +0.5 4,473,755 - HGI48_RS20010 0.20 +1.5 4,473,755 - HGI48_RS20010 0.20 -0.9 4,473,779 + HGI48_RS20010 0.22 -1.5 4,473,780 - HGI48_RS20010 0.22 -0.9 4,473,793 + HGI48_RS20010 0.24 -0.7 4,473,823 + HGI48_RS20010 0.27 +0.7 4,473,824 - HGI48_RS20010 0.27 -0.3 4,473,922 + HGI48_RS20010 0.39 -1.0 4,473,922 + HGI48_RS20010 0.39 +0.7 4,473,922 + HGI48_RS20010 0.39 +1.2 4,473,923 - HGI48_RS20010 0.39 +1.1 4,473,923 - HGI48_RS20010 0.39 -2.0 4,473,999 + HGI48_RS20010 0.48 +0.5 4,474,057 + HGI48_RS20010 0.54 +1.8 4,474,057 + HGI48_RS20010 0.54 -0.5 4,474,058 - HGI48_RS20010 0.54 +0.9 4,474,123 + HGI48_RS20010 0.62 +1.1 4,474,123 + HGI48_RS20010 0.62 +1.5 4,474,123 + +2.7 4,474,124 - HGI48_RS20010 0.62 -1.5 4,474,124 - HGI48_RS20010 0.62 -2.5 4,474,124 - HGI48_RS20010 0.62 -0.5 4,474,124 - HGI48_RS20010 0.62 -1.3 4,474,232 - HGI48_RS20010 0.74 -0.2 4,474,251 - HGI48_RS20010 0.77 +0.3 4,474,267 + +1.1 4,474,267 + HGI48_RS20010 0.78 -0.5 4,474,268 - HGI48_RS20010 0.79 +0.4 4,474,268 - HGI48_RS20010 0.79 -0.2 4,474,268 - HGI48_RS20010 0.79 +1.0 4,474,268 - HGI48_RS20010 0.79 -1.2 4,474,268 - HGI48_RS20010 0.79 -1.2 4,474,268 - HGI48_RS20010 0.79 +0.1 4,474,273 + HGI48_RS20010 0.79 +0.1 4,474,273 + HGI48_RS20010 0.79 -0.7 4,474,273 + HGI48_RS20010 0.79 -1.7 4,474,273 + HGI48_RS20010 0.79 +0.3 4,474,273 + HGI48_RS20010 0.79 +0.7 4,474,282 + +0.5 4,474,283 - HGI48_RS20010 0.80 +0.5 4,474,283 - HGI48_RS20010 0.80 -0.9 4,474,283 - HGI48_RS20010 0.80 +1.5 4,474,283 - HGI48_RS20010 0.80 -0.9 4,474,294 + HGI48_RS20010 0.81 -1.5 4,474,294 + HGI48_RS20010 0.81 +0.3 4,474,301 - HGI48_RS20010 0.82 +0.2 4,474,346 + HGI48_RS20010 0.87 -1.2 4,474,346 + HGI48_RS20010 0.87 -1.2 4,474,346 + HGI48_RS20010 0.87 -1.2 4,474,347 - HGI48_RS20010 0.88 +2.4 4,474,347 - HGI48_RS20010 0.88 -0.9
Or see this region's nucleotide sequence