Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS19660

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS19650 and HGI48_RS19655 are separated by 1 nucleotidesHGI48_RS19655 and HGI48_RS19660 overlap by 8 nucleotidesHGI48_RS19660 and HGI48_RS19665 are separated by 135 nucleotides HGI48_RS19650: HGI48_RS19650 - tryptophan--tRNA ligase, at 4,388,187 to 4,389,191 _RS19650 HGI48_RS19655: HGI48_RS19655 - phosphoglycolate phosphatase, at 4,389,193 to 4,389,891 _RS19655 HGI48_RS19660: HGI48_RS19660 - ribulose-phosphate 3-epimerase, at 4,389,884 to 4,390,561 _RS19660 HGI48_RS19665: HGI48_RS19665 - adenine-specific DNA-methyltransferase, at 4,390,697 to 4,391,524 _RS19665 Position (kb) 4389 4390 4391Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4389.239 kb on - strandat 4389.297 kb on - strand, within HGI48_RS19655at 4389.297 kb on - strand, within HGI48_RS19655at 4389.297 kb on - strand, within HGI48_RS19655at 4389.297 kb on - strand, within HGI48_RS19655at 4389.301 kb on - strandat 4389.301 kb on - strand, within HGI48_RS19655at 4389.301 kb on - strand, within HGI48_RS19655at 4389.301 kb on - strand, within HGI48_RS19655at 4389.301 kb on - strand, within HGI48_RS19655at 4389.301 kb on - strand, within HGI48_RS19655at 4389.301 kb on - strand, within HGI48_RS19655at 4389.301 kb on - strand, within HGI48_RS19655at 4389.301 kb on - strandat 4389.301 kb on - strand, within HGI48_RS19655at 4389.301 kb on - strand, within HGI48_RS19655at 4389.301 kb on - strand, within HGI48_RS19655at 4389.353 kb on - strand, within HGI48_RS19655at 4389.353 kb on - strand, within HGI48_RS19655at 4389.353 kb on - strand, within HGI48_RS19655at 4389.355 kb on - strand, within HGI48_RS19655at 4389.355 kb on - strand, within HGI48_RS19655at 4389.422 kb on + strand, within HGI48_RS19655at 4389.422 kb on + strand, within HGI48_RS19655at 4389.422 kb on + strand, within HGI48_RS19655at 4389.422 kb on + strand, within HGI48_RS19655at 4389.422 kb on + strand, within HGI48_RS19655at 4389.423 kb on - strand, within HGI48_RS19655at 4389.423 kb on - strand, within HGI48_RS19655at 4389.423 kb on - strand, within HGI48_RS19655at 4389.538 kb on - strand, within HGI48_RS19655at 4389.638 kb on + strand, within HGI48_RS19655at 4389.638 kb on + strand, within HGI48_RS19655at 4389.639 kb on - strand, within HGI48_RS19655at 4389.639 kb on - strand, within HGI48_RS19655at 4389.639 kb on - strand, within HGI48_RS19655at 4389.641 kb on + strand, within HGI48_RS19655at 4389.641 kb on + strand, within HGI48_RS19655at 4389.641 kb on + strand, within HGI48_RS19655at 4389.641 kb on + strand, within HGI48_RS19655at 4389.641 kb on + strandat 4389.641 kb on + strand, within HGI48_RS19655at 4389.642 kb on - strand, within HGI48_RS19655at 4389.642 kb on - strand, within HGI48_RS19655at 4389.642 kb on - strand, within HGI48_RS19655at 4389.642 kb on - strand, within HGI48_RS19655at 4389.642 kb on - strand, within HGI48_RS19655at 4389.642 kb on - strand, within HGI48_RS19655at 4389.642 kb on - strand, within HGI48_RS19655at 4389.897 kb on - strandat 4390.612 kb on + strandat 4390.612 kb on + strandat 4390.654 kb on + strandat 4390.655 kb on - strandat 4391.538 kb on - strandat 4391.538 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
4,389,239 - -0.7
4,389,297 - HGI48_RS19655 0.15 +0.1
4,389,297 - HGI48_RS19655 0.15 -1.5
4,389,297 - HGI48_RS19655 0.15 +1.4
4,389,297 - HGI48_RS19655 0.15 +0.1
4,389,301 - -0.5
4,389,301 - HGI48_RS19655 0.15 -1.0
4,389,301 - HGI48_RS19655 0.15 -0.9
4,389,301 - HGI48_RS19655 0.15 +1.1
4,389,301 - HGI48_RS19655 0.15 +0.7
4,389,301 - HGI48_RS19655 0.15 -1.2
4,389,301 - HGI48_RS19655 0.15 +1.1
4,389,301 - HGI48_RS19655 0.15 +0.4
4,389,301 - -0.5
4,389,301 - HGI48_RS19655 0.15 -0.3
4,389,301 - HGI48_RS19655 0.15 +0.5
4,389,301 - HGI48_RS19655 0.15 +0.6
4,389,353 - HGI48_RS19655 0.23 +1.4
4,389,353 - HGI48_RS19655 0.23 +1.4
4,389,353 - HGI48_RS19655 0.23 -0.2
4,389,355 - HGI48_RS19655 0.23 -1.2
4,389,355 - HGI48_RS19655 0.23 -1.6
4,389,422 + HGI48_RS19655 0.33 -1.3
4,389,422 + HGI48_RS19655 0.33 +1.4
4,389,422 + HGI48_RS19655 0.33 +1.6
4,389,422 + HGI48_RS19655 0.33 -0.2
4,389,422 + HGI48_RS19655 0.33 -2.4
4,389,423 - HGI48_RS19655 0.33 -0.9
4,389,423 - HGI48_RS19655 0.33 +0.7
4,389,423 - HGI48_RS19655 0.33 +0.1
4,389,538 - HGI48_RS19655 0.49 -1.2
4,389,638 + HGI48_RS19655 0.64 -0.9
4,389,638 + HGI48_RS19655 0.64 -1.3
4,389,639 - HGI48_RS19655 0.64 +0.1
4,389,639 - HGI48_RS19655 0.64 +0.2
4,389,639 - HGI48_RS19655 0.64 +1.2
4,389,641 + HGI48_RS19655 0.64 -2.6
4,389,641 + HGI48_RS19655 0.64 -0.5
4,389,641 + HGI48_RS19655 0.64 +0.6
4,389,641 + HGI48_RS19655 0.64 -2.6
4,389,641 + +3.7
4,389,641 + HGI48_RS19655 0.64 -0.9
4,389,642 - HGI48_RS19655 0.64 -1.2
4,389,642 - HGI48_RS19655 0.64 -0.9
4,389,642 - HGI48_RS19655 0.64 -0.4
4,389,642 - HGI48_RS19655 0.64 -0.9
4,389,642 - HGI48_RS19655 0.64 -1.9
4,389,642 - HGI48_RS19655 0.64 +0.5
4,389,642 - HGI48_RS19655 0.64 +1.4
4,389,897 - -0.3
4,390,612 + -0.5
4,390,612 + -0.7
4,390,654 + -0.1
4,390,655 - -1.4
4,391,538 - -0.1
4,391,538 - -0.1

Or see this region's nucleotide sequence