Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS17935 and HGI48_RS17940 are separated by 97 nucleotides HGI48_RS17940 and HGI48_RS17945 are separated by 27 nucleotides HGI48_RS17945 and HGI48_RS17950 are separated by 16 nucleotides
HGI48_RS17935: HGI48_RS17935 - preprotein translocase subunit SecA, at 4,023,298 to 4,025,991
_RS17935
HGI48_RS17940: HGI48_RS17940 - secA regulator SecM, at 4,026,089 to 4,026,589
_RS17940
HGI48_RS17945: HGI48_RS17945 - DUF721 domain-containing protein, at 4,026,617 to 4,027,138
_RS17945
HGI48_RS17950: HGI48_RS17950 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 4,027,155 to 4,028,072
_RS17950
Position (kb)
4026
4027
4028 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4026.054 kb on - strand at 4026.054 kb on - strand at 4026.243 kb on - strand, within HGI48_RS17940 at 4026.243 kb on - strand, within HGI48_RS17940 at 4026.243 kb on - strand, within HGI48_RS17940 at 4026.243 kb on - strand, within HGI48_RS17940 at 4026.243 kb on - strand, within HGI48_RS17940 at 4026.255 kb on - strand, within HGI48_RS17940 at 4026.299 kb on - strand, within HGI48_RS17940 at 4026.329 kb on - strand, within HGI48_RS17940 at 4026.418 kb on - strand, within HGI48_RS17940 at 4026.418 kb on - strand, within HGI48_RS17940 at 4026.554 kb on - strand at 4027.071 kb on + strand at 4027.083 kb on + strand, within HGI48_RS17945 at 4027.136 kb on + strand at 4027.136 kb on + strand at 4027.136 kb on + strand at 4027.136 kb on + strand at 4027.137 kb on - strand at 4027.137 kb on - strand at 4027.137 kb on - strand at 4027.137 kb on - strand at 4027.137 kb on - strand at 4027.169 kb on + strand at 4027.189 kb on - strand at 4027.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,026,054 - -1.6 4,026,054 - +0.0 4,026,243 - HGI48_RS17940 0.31 -1.0 4,026,243 - HGI48_RS17940 0.31 -1.8 4,026,243 - HGI48_RS17940 0.31 +0.0 4,026,243 - HGI48_RS17940 0.31 +2.0 4,026,243 - HGI48_RS17940 0.31 +0.6 4,026,255 - HGI48_RS17940 0.33 +1.2 4,026,299 - HGI48_RS17940 0.42 -0.6 4,026,329 - HGI48_RS17940 0.48 -0.8 4,026,418 - HGI48_RS17940 0.66 +0.5 4,026,418 - HGI48_RS17940 0.66 -0.1 4,026,554 - +0.1 4,027,071 + +1.8 4,027,083 + HGI48_RS17945 0.89 +0.4 4,027,136 + -0.2 4,027,136 + +0.4 4,027,136 + -1.0 4,027,136 + -1.0 4,027,137 - +1.4 4,027,137 - -0.1 4,027,137 - -0.6 4,027,137 - +2.0 4,027,137 - -0.8 4,027,169 + -1.0 4,027,189 - +1.0 4,027,189 - +0.8
Or see this region's nucleotide sequence