Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09745

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS09740 and HGI48_RS09745 overlap by 4 nucleotidesHGI48_RS09745 and HGI48_RS09750 are separated by 4 nucleotides HGI48_RS09740: HGI48_RS09740 - histidinol-phosphate transaminase, at 2,102,831 to 2,103,901 _RS09740 HGI48_RS09745: HGI48_RS09745 - histidinol dehydrogenase, at 2,103,898 to 2,105,208 _RS09745 HGI48_RS09750: HGI48_RS09750 - ATP phosphoribosyltransferase, at 2,105,213 to 2,106,112 _RS09750 Position (kb) 2103 2104 2105 2106Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2103.280 kb on + strand, within HGI48_RS09740at 2103.351 kb on + strand, within HGI48_RS09740at 2103.351 kb on + strand, within HGI48_RS09740at 2103.459 kb on + strand, within HGI48_RS09740at 2103.460 kb on - strand, within HGI48_RS09740at 2103.890 kb on - strandat 2104.070 kb on + strandat 2104.088 kb on + strand, within HGI48_RS09745at 2104.089 kb on - strand, within HGI48_RS09745at 2104.099 kb on + strand, within HGI48_RS09745at 2104.100 kb on - strand, within HGI48_RS09745at 2104.100 kb on - strand, within HGI48_RS09745at 2104.565 kb on + strandat 2104.566 kb on - strand, within HGI48_RS09745at 2104.814 kb on + strand, within HGI48_RS09745at 2104.814 kb on + strand, within HGI48_RS09745at 2104.823 kb on - strand, within HGI48_RS09745at 2104.876 kb on + strandat 2105.249 kb on - strandat 2105.430 kb on + strand, within HGI48_RS09750at 2105.430 kb on + strand, within HGI48_RS09750at 2105.430 kb on + strand, within HGI48_RS09750at 2105.430 kb on + strand, within HGI48_RS09750at 2105.431 kb on - strand, within HGI48_RS09750at 2105.431 kb on - strand, within HGI48_RS09750at 2105.431 kb on - strand, within HGI48_RS09750at 2105.614 kb on + strand, within HGI48_RS09750at 2105.614 kb on + strandat 2106.093 kb on - strandat 2106.093 kb on - strandat 2106.093 kb on - strandat 2106.093 kb on - strandat 2106.127 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
2,103,280 + HGI48_RS09740 0.42 -2.8
2,103,351 + HGI48_RS09740 0.49 -1.9
2,103,351 + HGI48_RS09740 0.49 -0.1
2,103,459 + HGI48_RS09740 0.59 -2.0
2,103,460 - HGI48_RS09740 0.59 -0.6
2,103,890 - +0.0
2,104,070 + +0.0
2,104,088 + HGI48_RS09745 0.14 +0.1
2,104,089 - HGI48_RS09745 0.15 -2.0
2,104,099 + HGI48_RS09745 0.15 +0.6
2,104,100 - HGI48_RS09745 0.15 -1.4
2,104,100 - HGI48_RS09745 0.15 -0.4
2,104,565 + +0.6
2,104,566 - HGI48_RS09745 0.51 -0.7
2,104,814 + HGI48_RS09745 0.70 +0.3
2,104,814 + HGI48_RS09745 0.70 -2.0
2,104,823 - HGI48_RS09745 0.71 -3.9
2,104,876 + -1.0
2,105,249 - -2.4
2,105,430 + HGI48_RS09750 0.24 +0.9
2,105,430 + HGI48_RS09750 0.24 -1.1
2,105,430 + HGI48_RS09750 0.24 -2.0
2,105,430 + HGI48_RS09750 0.24 +1.2
2,105,431 - HGI48_RS09750 0.24 -0.1
2,105,431 - HGI48_RS09750 0.24 +0.2
2,105,431 - HGI48_RS09750 0.24 -1.0
2,105,614 + HGI48_RS09750 0.45 -3.0
2,105,614 + -1.0
2,106,093 - -1.0
2,106,093 - +1.6
2,106,093 - -1.1
2,106,093 - -1.1
2,106,127 - -2.2

Or see this region's nucleotide sequence