Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS09740 and HGI48_RS09745 overlap by 4 nucleotides HGI48_RS09745 and HGI48_RS09750 are separated by 4 nucleotides
HGI48_RS09740: HGI48_RS09740 - histidinol-phosphate transaminase, at 2,102,831 to 2,103,901
_RS09740
HGI48_RS09745: HGI48_RS09745 - histidinol dehydrogenase, at 2,103,898 to 2,105,208
_RS09745
HGI48_RS09750: HGI48_RS09750 - ATP phosphoribosyltransferase, at 2,105,213 to 2,106,112
_RS09750
Position (kb)
2103
2104
2105
2106 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2103.280 kb on + strand, within HGI48_RS09740 at 2103.351 kb on + strand, within HGI48_RS09740 at 2103.351 kb on + strand, within HGI48_RS09740 at 2103.459 kb on + strand, within HGI48_RS09740 at 2103.460 kb on - strand, within HGI48_RS09740 at 2103.890 kb on - strand at 2104.070 kb on + strand at 2104.088 kb on + strand, within HGI48_RS09745 at 2104.089 kb on - strand, within HGI48_RS09745 at 2104.099 kb on + strand, within HGI48_RS09745 at 2104.100 kb on - strand, within HGI48_RS09745 at 2104.100 kb on - strand, within HGI48_RS09745 at 2104.565 kb on + strand at 2104.566 kb on - strand, within HGI48_RS09745 at 2104.814 kb on + strand, within HGI48_RS09745 at 2104.814 kb on + strand, within HGI48_RS09745 at 2104.823 kb on - strand, within HGI48_RS09745 at 2104.876 kb on + strand at 2105.249 kb on - strand at 2105.430 kb on + strand, within HGI48_RS09750 at 2105.430 kb on + strand, within HGI48_RS09750 at 2105.430 kb on + strand, within HGI48_RS09750 at 2105.430 kb on + strand, within HGI48_RS09750 at 2105.431 kb on - strand, within HGI48_RS09750 at 2105.431 kb on - strand, within HGI48_RS09750 at 2105.431 kb on - strand, within HGI48_RS09750 at 2105.614 kb on + strand, within HGI48_RS09750 at 2105.614 kb on + strand at 2106.093 kb on - strand at 2106.093 kb on - strand at 2106.093 kb on - strand at 2106.093 kb on - strand at 2106.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 2,103,280 + HGI48_RS09740 0.42 -2.8 2,103,351 + HGI48_RS09740 0.49 -1.9 2,103,351 + HGI48_RS09740 0.49 -0.1 2,103,459 + HGI48_RS09740 0.59 -2.0 2,103,460 - HGI48_RS09740 0.59 -0.6 2,103,890 - +0.0 2,104,070 + +0.0 2,104,088 + HGI48_RS09745 0.14 +0.1 2,104,089 - HGI48_RS09745 0.15 -2.0 2,104,099 + HGI48_RS09745 0.15 +0.6 2,104,100 - HGI48_RS09745 0.15 -1.4 2,104,100 - HGI48_RS09745 0.15 -0.4 2,104,565 + +0.6 2,104,566 - HGI48_RS09745 0.51 -0.7 2,104,814 + HGI48_RS09745 0.70 +0.3 2,104,814 + HGI48_RS09745 0.70 -2.0 2,104,823 - HGI48_RS09745 0.71 -3.9 2,104,876 + -1.0 2,105,249 - -2.4 2,105,430 + HGI48_RS09750 0.24 +0.9 2,105,430 + HGI48_RS09750 0.24 -1.1 2,105,430 + HGI48_RS09750 0.24 -2.0 2,105,430 + HGI48_RS09750 0.24 +1.2 2,105,431 - HGI48_RS09750 0.24 -0.1 2,105,431 - HGI48_RS09750 0.24 +0.2 2,105,431 - HGI48_RS09750 0.24 -1.0 2,105,614 + HGI48_RS09750 0.45 -3.0 2,105,614 + -1.0 2,106,093 - -1.0 2,106,093 - +1.6 2,106,093 - -1.1 2,106,093 - -1.1 2,106,127 - -2.2
Or see this region's nucleotide sequence