Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05005

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,050,393	+		HGI48_RS05000	0.45	-1.0
1,050,393	+		HGI48_RS05000	0.45	+1.3
1,050,394	-		HGI48_RS05000	0.45	-1.2
1,050,394	-		HGI48_RS05000	0.45	-1.5
1,050,394	-		HGI48_RS05000	0.45	+0.0
1,050,394	-		HGI48_RS05000	0.45	+0.7
1,050,395	+		HGI48_RS05000	0.45	+2.0
1,050,395	+		HGI48_RS05000	0.45	-1.0
1,050,395	+		HGI48_RS05000	0.45	-2.7
1,050,395	+				+0.8
1,050,396	-				-0.7
1,050,396	-		HGI48_RS05000	0.45	+1.2
1,050,462	+		HGI48_RS05000	0.50	-2.2
1,050,462	+		HGI48_RS05000	0.50	+0.5
1,050,462	+				-0.7
1,050,463	-		HGI48_RS05000	0.50	+0.1
1,050,463	-		HGI48_RS05000	0.50	-0.4
1,050,567	+				+1.3
1,050,568	-		HGI48_RS05000	0.58	+1.4
1,050,568	-		HGI48_RS05000	0.58	-0.2
1,050,657	+		HGI48_RS05000	0.64	+1.1
1,050,683	+		HGI48_RS05000	0.66	-1.6
1,050,684	-		HGI48_RS05000	0.66	-1.2
1,050,768	+		HGI48_RS05000	0.72	-2.2
1,050,890	+				-0.2
1,050,935	+		HGI48_RS05000	0.85	-2.0
1,050,963	+		HGI48_RS05000	0.87	-0.9
1,050,963	+		HGI48_RS05000	0.87	-1.5
1,050,968	-		HGI48_RS05000	0.87	-2.0
1,051,067	+				-1.2
1,051,067	+				-1.5
1,051,067	+				-0.9
1,051,067	+				-0.6
1,051,068	-				-0.6
1,051,068	-				-0.7
1,051,068	-				-0.9
1,051,068	-				+0.6
1,051,068	-				+0.3
1,051,068	-				+0.0
1,051,068	-				-0.5
1,051,068	-				-2.5
1,051,104	+				-1.5
1,051,104	+				+0.4
1,051,104	+				+1.0
1,051,105	-				-1.0
1,051,107	+				+0.2
1,051,107	+				-2.7
1,051,107	+				-0.7
1,051,107	+				-0.6
1,051,107	+				+1.2
1,051,107	+				-0.7
1,051,107	+				-0.2
1,051,107	+				-1.0
1,051,107	+				-1.2
1,051,107	+				-1.0
1,051,107	+				-1.2
1,051,107	+				-2.7
1,051,108	-				-1.1
1,051,108	-				+0.3
1,051,108	-				+0.3
1,051,162	+				+1.3
1,051,211	+				+0.8
1,051,211	+				-0.1
1,051,217	-				-0.1
1,051,217	-				-0.5
1,051,217	-				-1.0
1,051,218	-				-1.5
1,051,230	+				-0.2
1,051,248	-				+1.3
1,051,381	+				-1.2
1,051,382	-				-0.9
1,051,385	-				-0.2
1,051,416	-				+0.5
1,051,483	-		HGI48_RS05005	0.11	-1.5
1,051,483	-		HGI48_RS05005	0.11	-1.5
1,051,483	-		HGI48_RS05005	0.11	-0.2
1,051,521	+		HGI48_RS05005	0.14	-0.6
1,051,521	+		HGI48_RS05005	0.14	+0.8
1,051,521	+		HGI48_RS05005	0.14	-0.2
1,051,521	+		HGI48_RS05005	0.14	-0.5
1,051,522	-				-0.2
1,051,522	-		HGI48_RS05005	0.14	-1.0
1,051,522	-		HGI48_RS05005	0.14	-0.6
1,051,670	+		HGI48_RS05005	0.26	-1.2
1,051,670	+		HGI48_RS05005	0.26	+0.0
1,051,671	-		HGI48_RS05005	0.26	-1.3
1,051,671	-		HGI48_RS05005	0.26	-0.4
1,051,693	+		HGI48_RS05005	0.28	-1.2
1,051,722	-		HGI48_RS05005	0.31	+1.2
1,051,788	+		HGI48_RS05005	0.36	+0.5
1,051,830	+		HGI48_RS05005	0.39	-1.3
1,051,830	+		HGI48_RS05005	0.39	-0.8
1,051,830	+		HGI48_RS05005	0.39	+0.1
1,051,830	+				-0.2
1,051,830	+		HGI48_RS05005	0.39	+1.4
1,051,830	+		HGI48_RS05005	0.39	-1.7
1,051,835	+		HGI48_RS05005	0.40	+0.3
1,051,835	+		HGI48_RS05005	0.40	+2.4
1,052,046	+		HGI48_RS05005	0.57	-1.7
1,052,046	+				-0.7
1,052,046	+		HGI48_RS05005	0.57	-0.2
1,052,046	+		HGI48_RS05005	0.57	+0.4
1,052,046	+		HGI48_RS05005	0.57	+0.1
1,052,046	+		HGI48_RS05005	0.57	+0.7
1,052,046	+		HGI48_RS05005	0.57	-2.2
1,052,047	-		HGI48_RS05005	0.57	+0.0
1,052,047	-		HGI48_RS05005	0.57	+0.7
1,052,047	-		HGI48_RS05005	0.57	+0.8
1,052,047	-		HGI48_RS05005	0.57	-0.5
1,052,086	+		HGI48_RS05005	0.60	+0.8
1,052,086	+		HGI48_RS05005	0.60	-0.4
1,052,086	+		HGI48_RS05005	0.60	-0.2
1,052,086	+		HGI48_RS05005	0.60	-1.2
1,052,442	-		HGI48_RS05005	0.89	+1.0
1,052,504	+				+1.7
1,052,505	-				+0.8
1,052,559	+				+2.3
1,052,581	-				+1.4
1,052,612	+				-0.2
1,052,612	+				-0.2
1,052,613	-				-0.1
1,052,633	+				-0.2
1,052,657	+				+0.9
1,052,658	-				-1.7
1,052,658	-				-1.0
1,052,759	+				-2.0
1,052,770	+				+0.8
1,052,770	+				-0.5
1,052,771	-				-1.0
1,052,771	-				+1.0
1,052,916	+				+1.5
1,052,917	-				-0.0
1,053,087	+				+1.6
1,053,087	+				-1.2
1,053,087	+				-2.2
1,053,087	+				+0.7
1,053,088	-				-2.0
1,053,088	-				-0.2
1,053,088	-				-1.2
1,053,088	-				-2.0
1,053,088	-				-1.4
1,053,088	-				-0.8
1,053,159	+				-0.2
1,053,159	+				-1.5
1,053,160	-				-0.9
1,053,160	-				-0.2
1,053,160	-				+0.2
1,053,161	+				-2.0
1,053,161	+				+0.5
1,053,161	+				-0.3
1,053,161	+				-1.5
1,053,161	+				+0.8
1,053,162	-				+1.1
1,053,162	-				+2.2
1,053,162	-				+2.7
1,053,162	-				-0.9
1,053,162	-				-1.8
1,053,162	-				-1.5
1,053,162	-				-0.8
1,053,162	-				-0.4
1,053,162	-				+0.8
1,053,162	-				+1.0
1,053,162	-				-2.0
1,053,285	+		HGI48_RS05020	0.19	-1.4
1,053,429	+		HGI48_RS05020	0.31	+0.3
1,053,429	+		HGI48_RS05020	0.31	+0.6
1,053,429	+				-0.2
1,053,429	+		HGI48_RS05020	0.31	-0.5
1,053,429	+		HGI48_RS05020	0.31	-2.6
1,053,429	+		HGI48_RS05020	0.31	-2.0
1,053,430	-		HGI48_RS05020	0.32	+0.2
1,053,430	-		HGI48_RS05020	0.32	-0.7
1,053,430	-		HGI48_RS05020	0.32	-2.9
1,053,430	-		HGI48_RS05020	0.32	+0.4
1,053,486	+		HGI48_RS05020	0.36	-0.8
1,053,486	+		HGI48_RS05020	0.36	+1.0
1,053,486	+		HGI48_RS05020	0.36	-0.2
1,053,487	-		HGI48_RS05020	0.36	-2.5
1,053,487	-		HGI48_RS05020	0.36	+1.2
1,053,487	-		HGI48_RS05020	0.36	-1.3
1,053,541	-		HGI48_RS05020	0.41	+0.1