Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04230 and HGI48_RS04235 are separated by 878 nucleotides HGI48_RS04235 and HGI48_RS04240 are separated by 919 nucleotides
HGI48_RS04230: HGI48_RS04230 - dienelactone hydrolase family protein, at 890,083 to 891,261
_RS04230
HGI48_RS04235: HGI48_RS04235 - AlpA family transcriptional regulator, at 892,140 to 892,343
_RS04235
HGI48_RS04240: HGI48_RS04240 - hypothetical protein, at 893,263 to 893,640
_RS04240
Position (kb) 892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 891.144 kb on + strand at 891.144 kb on + strand at 891.145 kb on - strand at 891.171 kb on + strand at 891.214 kb on + strand at 891.215 kb on - strand at 891.215 kb on - strand at 891.656 kb on + strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.657 kb on - strand at 891.668 kb on + strand at 891.685 kb on + strand at 891.686 kb on - strand at 891.686 kb on - strand at 891.729 kb on - strand at 891.756 kb on + strand at 891.858 kb on + strand at 891.859 kb on - strand at 891.888 kb on + strand at 891.902 kb on - strand at 891.911 kb on + strand at 891.939 kb on - strand at 892.108 kb on + strand at 892.108 kb on + strand at 892.108 kb on + strand at 892.352 kb on - strand at 892.506 kb on - strand at 892.793 kb on + strand at 892.810 kb on + strand at 892.868 kb on + strand at 892.919 kb on - strand at 893.001 kb on + strand at 893.138 kb on - strand at 893.242 kb on + strand at 893.310 kb on + strand, within HGI48_RS04240 at 893.313 kb on - strand, within HGI48_RS04240
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 891,144 + +0.3 891,144 + +1.5 891,145 - -1.1 891,171 + -0.7 891,214 + -2.1 891,215 - -0.9 891,215 - -0.9 891,656 + +0.9 891,657 - +0.9 891,657 - +2.0 891,657 - -0.7 891,657 - -1.1 891,668 + -1.3 891,685 + -0.3 891,686 - -1.4 891,686 - +1.2 891,729 - +0.6 891,756 + +1.2 891,858 + -0.1 891,859 - -1.9 891,888 + -0.7 891,902 - +0.5 891,911 + -1.3 891,939 - +0.4 892,108 + +0.9 892,108 + +2.1 892,108 + +0.2 892,352 - +0.7 892,506 - -2.9 892,793 + -1.1 892,810 + -1.1 892,868 + +0.9 892,919 - +0.3 893,001 + +0.3 893,138 - -0.1 893,242 + -1.3 893,310 + HGI48_RS04240 0.12 -1.4 893,313 - HGI48_RS04240 0.13 +1.3
Or see this region's nucleotide sequence