Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03965

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03960 and HGI48_RS03965 are separated by 58 nucleotidesHGI48_RS03965 and HGI48_RS03970 are separated by 5 nucleotides HGI48_RS03960: HGI48_RS03960 - alkene reductase, at 839,785 to 840,867 _RS03960 HGI48_RS03965: HGI48_RS03965 - MFS transporter, at 840,926 to 842,113 _RS03965 HGI48_RS03970: HGI48_RS03970 - zinc-binding alcohol dehydrogenase family protein, at 842,119 to 843,096 _RS03970 Position (kb) 840 841 842 843Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 840.071 kb on + strand, within HGI48_RS03960at 840.071 kb on + strand, within HGI48_RS03960at 840.266 kb on + strandat 840.318 kb on - strand, within HGI48_RS03960at 840.473 kb on + strandat 840.584 kb on + strand, within HGI48_RS03960at 840.584 kb on + strand, within HGI48_RS03960at 840.584 kb on + strand, within HGI48_RS03960at 840.584 kb on + strand, within HGI48_RS03960at 840.585 kb on - strand, within HGI48_RS03960at 840.653 kb on + strand, within HGI48_RS03960at 840.653 kb on + strand, within HGI48_RS03960at 840.653 kb on + strand, within HGI48_RS03960at 840.654 kb on - strand, within HGI48_RS03960at 840.654 kb on - strand, within HGI48_RS03960at 840.675 kb on - strand, within HGI48_RS03960at 840.743 kb on + strand, within HGI48_RS03960at 840.743 kb on + strand, within HGI48_RS03960at 840.743 kb on + strand, within HGI48_RS03960at 840.743 kb on + strand, within HGI48_RS03960at 840.743 kb on + strand, within HGI48_RS03960at 840.744 kb on - strand, within HGI48_RS03960at 840.746 kb on + strand, within HGI48_RS03960at 840.746 kb on + strand, within HGI48_RS03960at 840.747 kb on - strand, within HGI48_RS03960at 840.747 kb on - strand, within HGI48_RS03960at 840.747 kb on - strandat 840.747 kb on - strand, within HGI48_RS03960at 840.845 kb on + strandat 840.880 kb on + strandat 840.892 kb on - strandat 840.987 kb on - strandat 841.089 kb on - strand, within HGI48_RS03965at 841.360 kb on - strand, within HGI48_RS03965at 841.425 kb on + strand, within HGI48_RS03965at 841.425 kb on + strand, within HGI48_RS03965at 841.425 kb on + strand, within HGI48_RS03965at 841.426 kb on - strand, within HGI48_RS03965at 841.431 kb on + strand, within HGI48_RS03965at 841.431 kb on + strand, within HGI48_RS03965at 841.431 kb on + strand, within HGI48_RS03965at 841.431 kb on + strand, within HGI48_RS03965at 841.431 kb on + strand, within HGI48_RS03965at 841.431 kb on + strandat 841.431 kb on + strand, within HGI48_RS03965at 841.432 kb on - strand, within HGI48_RS03965at 841.432 kb on - strand, within HGI48_RS03965at 841.708 kb on + strand, within HGI48_RS03965at 841.708 kb on + strand, within HGI48_RS03965at 841.708 kb on + strand, within HGI48_RS03965at 841.708 kb on + strand, within HGI48_RS03965at 841.708 kb on + strand, within HGI48_RS03965at 841.708 kb on + strand, within HGI48_RS03965at 841.708 kb on + strand, within HGI48_RS03965at 841.709 kb on - strandat 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.709 kb on - strand, within HGI48_RS03965at 841.928 kb on + strand, within HGI48_RS03965at 841.941 kb on - strand, within HGI48_RS03965at 841.941 kb on - strand, within HGI48_RS03965at 842.072 kb on + strandat 842.073 kb on - strandat 842.128 kb on + strandat 842.128 kb on + strandat 842.129 kb on - strandat 842.129 kb on - strandat 842.177 kb on + strandat 842.178 kb on - strandat 842.178 kb on - strandat 842.208 kb on + strandat 842.208 kb on + strandat 842.208 kb on + strandat 842.208 kb on + strandat 842.209 kb on - strandat 842.209 kb on - strandat 842.720 kb on + strand, within HGI48_RS03970at 842.720 kb on + strand, within HGI48_RS03970at 842.720 kb on + strand, within HGI48_RS03970at 842.720 kb on + strand, within HGI48_RS03970at 842.721 kb on - strand, within HGI48_RS03970at 842.721 kb on - strand, within HGI48_RS03970at 842.721 kb on - strand, within HGI48_RS03970at 842.721 kb on - strand, within HGI48_RS03970at 842.721 kb on - strand, within HGI48_RS03970at 842.721 kb on - strand, within HGI48_RS03970at 842.721 kb on - strand, within HGI48_RS03970at 842.721 kb on - strand, within HGI48_RS03970at 842.849 kb on + strand, within HGI48_RS03970at 842.849 kb on + strand, within HGI48_RS03970at 842.955 kb on + strand, within HGI48_RS03970at 843.046 kb on + strandat 843.047 kb on - strandat 843.047 kb on - strandat 843.047 kb on - strandat 843.047 kb on - strandat 843.104 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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840,071 + HGI48_RS03960 0.26 -1.4
840,071 + HGI48_RS03960 0.26 -0.4
840,266 + +2.5
840,318 - HGI48_RS03960 0.49 -0.5
840,473 + +1.9
840,584 + HGI48_RS03960 0.74 +0.3
840,584 + HGI48_RS03960 0.74 -0.5
840,584 + HGI48_RS03960 0.74 -1.1
840,584 + HGI48_RS03960 0.74 -0.5
840,585 - HGI48_RS03960 0.74 -0.2
840,653 + HGI48_RS03960 0.80 -0.4
840,653 + HGI48_RS03960 0.80 +0.5
840,653 + HGI48_RS03960 0.80 -0.6
840,654 - HGI48_RS03960 0.80 +0.7
840,654 - HGI48_RS03960 0.80 -0.4
840,675 - HGI48_RS03960 0.82 +1.3
840,743 + HGI48_RS03960 0.88 -1.4
840,743 + HGI48_RS03960 0.88 -1.1
840,743 + HGI48_RS03960 0.88 -1.7
840,743 + HGI48_RS03960 0.88 -0.2
840,743 + HGI48_RS03960 0.88 -0.1
840,744 - HGI48_RS03960 0.89 +0.2
840,746 + HGI48_RS03960 0.89 +1.7
840,746 + HGI48_RS03960 0.89 +2.7
840,747 - HGI48_RS03960 0.89 -0.9
840,747 - HGI48_RS03960 0.89 +0.5
840,747 - -0.1
840,747 - HGI48_RS03960 0.89 +0.5
840,845 + +0.7
840,880 + +1.3
840,892 - +1.8
840,987 - -1.4
841,089 - HGI48_RS03965 0.14 +0.6
841,360 - HGI48_RS03965 0.37 -1.7
841,425 + HGI48_RS03965 0.42 -0.7
841,425 + HGI48_RS03965 0.42 +1.0
841,425 + HGI48_RS03965 0.42 +1.9
841,426 - HGI48_RS03965 0.42 +1.0
841,431 + HGI48_RS03965 0.43 -1.9
841,431 + HGI48_RS03965 0.43 -0.1
841,431 + HGI48_RS03965 0.43 +0.9
841,431 + HGI48_RS03965 0.43 +0.2
841,431 + HGI48_RS03965 0.43 +1.1
841,431 + -0.1
841,431 + HGI48_RS03965 0.43 +0.2
841,432 - HGI48_RS03965 0.43 -0.8
841,432 - HGI48_RS03965 0.43 -2.8
841,708 + HGI48_RS03965 0.66 -1.1
841,708 + HGI48_RS03965 0.66 -1.1
841,708 + HGI48_RS03965 0.66 +1.4
841,708 + HGI48_RS03965 0.66 +1.1
841,708 + HGI48_RS03965 0.66 -1.1
841,708 + HGI48_RS03965 0.66 +0.6
841,708 + HGI48_RS03965 0.66 -0.7
841,709 - -0.7
841,709 - HGI48_RS03965 0.66 -0.7
841,709 - HGI48_RS03965 0.66 -0.8
841,709 - HGI48_RS03965 0.66 +0.5
841,709 - HGI48_RS03965 0.66 +1.1
841,709 - HGI48_RS03965 0.66 -0.8
841,709 - HGI48_RS03965 0.66 -0.1
841,709 - HGI48_RS03965 0.66 -1.4
841,709 - HGI48_RS03965 0.66 -0.7
841,709 - HGI48_RS03965 0.66 +0.7
841,709 - HGI48_RS03965 0.66 -1.9
841,709 - HGI48_RS03965 0.66 -2.8
841,709 - HGI48_RS03965 0.66 -0.4
841,709 - HGI48_RS03965 0.66 -2.2
841,928 + HGI48_RS03965 0.84 +0.9
841,941 - HGI48_RS03965 0.85 +0.1
841,941 - HGI48_RS03965 0.85 +1.1
842,072 + +0.2
842,073 - -0.8
842,128 + -2.2
842,128 + -0.1
842,129 - -1.4
842,129 - +0.6
842,177 + +0.1
842,178 - -0.7
842,178 - -0.3
842,208 + -2.2
842,208 + +0.9
842,208 + +2.8
842,208 + +0.7
842,209 - -2.1
842,209 - +0.2
842,720 + HGI48_RS03970 0.61 -0.7
842,720 + HGI48_RS03970 0.61 +1.9
842,720 + HGI48_RS03970 0.61 +0.9
842,720 + HGI48_RS03970 0.61 -0.4
842,721 - HGI48_RS03970 0.62 -2.2
842,721 - HGI48_RS03970 0.62 -0.1
842,721 - HGI48_RS03970 0.62 -0.9
842,721 - HGI48_RS03970 0.62 -0.4
842,721 - HGI48_RS03970 0.62 +0.5
842,721 - HGI48_RS03970 0.62 -1.4
842,721 - HGI48_RS03970 0.62 -0.7
842,721 - HGI48_RS03970 0.62 -2.2
842,849 + HGI48_RS03970 0.75 -2.2
842,849 + HGI48_RS03970 0.75 -0.2
842,955 + HGI48_RS03970 0.85 +0.6
843,046 + -1.4
843,047 - -1.1
843,047 - -2.2
843,047 - -0.3
843,047 - +0.9
843,104 - +0.5

Or see this region's nucleotide sequence