Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03500

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03490 and HGI48_RS03495 are separated by 28 nucleotidesHGI48_RS03495 and HGI48_RS03500 are separated by 113 nucleotidesHGI48_RS03500 and HGI48_RS03505 are separated by 10 nucleotides HGI48_RS03490: HGI48_RS03490 - Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC, at 732,769 to 734,154 _RS03490 HGI48_RS03495: HGI48_RS03495 - cation efflux system protein CusF, at 734,183 to 734,536 _RS03495 HGI48_RS03500: HGI48_RS03500 - efflux RND transporter periplasmic adaptor subunit, at 734,650 to 735,930 _RS03500 HGI48_RS03505: HGI48_RS03505 - Cu(+)/Ag(+) efflux RND transporter permease subunit SilA, at 735,941 to 739,087 _RS03505 Position (kb) 734 735 736Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 733.726 kb on - strand, within HGI48_RS03490at 733.773 kb on + strand, within HGI48_RS03490at 733.815 kb on + strand, within HGI48_RS03490at 733.863 kb on + strandat 733.974 kb on - strand, within HGI48_RS03490at 733.979 kb on + strand, within HGI48_RS03490at 733.979 kb on + strand, within HGI48_RS03490at 733.980 kb on - strand, within HGI48_RS03490at 734.003 kb on + strand, within HGI48_RS03490at 734.004 kb on - strand, within HGI48_RS03490at 734.088 kb on + strandat 734.089 kb on - strandat 734.092 kb on + strandat 734.156 kb on + strandat 734.156 kb on + strandat 734.159 kb on - strandat 734.247 kb on - strand, within HGI48_RS03495at 734.444 kb on - strand, within HGI48_RS03495at 734.497 kb on + strand, within HGI48_RS03495at 734.681 kb on + strandat 734.857 kb on - strand, within HGI48_RS03500at 734.916 kb on + strand, within HGI48_RS03500at 734.923 kb on - strand, within HGI48_RS03500at 734.923 kb on - strand, within HGI48_RS03500at 735.015 kb on + strand, within HGI48_RS03500at 735.016 kb on - strand, within HGI48_RS03500at 735.019 kb on + strand, within HGI48_RS03500at 735.020 kb on - strand, within HGI48_RS03500at 735.020 kb on - strand, within HGI48_RS03500at 735.022 kb on - strand, within HGI48_RS03500at 735.114 kb on + strand, within HGI48_RS03500at 735.208 kb on - strand, within HGI48_RS03500at 735.208 kb on - strand, within HGI48_RS03500at 735.312 kb on + strand, within HGI48_RS03500at 735.312 kb on + strand, within HGI48_RS03500at 735.312 kb on + strand, within HGI48_RS03500at 735.313 kb on - strand, within HGI48_RS03500at 735.313 kb on - strandat 735.313 kb on - strand, within HGI48_RS03500at 735.313 kb on - strandat 735.313 kb on - strand, within HGI48_RS03500at 735.313 kb on - strand, within HGI48_RS03500at 735.313 kb on - strand, within HGI48_RS03500at 735.314 kb on + strand, within HGI48_RS03500at 735.314 kb on + strand, within HGI48_RS03500at 735.314 kb on + strand, within HGI48_RS03500at 735.314 kb on + strand, within HGI48_RS03500at 735.314 kb on + strandat 735.315 kb on - strand, within HGI48_RS03500at 735.315 kb on - strand, within HGI48_RS03500at 735.315 kb on - strand, within HGI48_RS03500at 735.315 kb on - strand, within HGI48_RS03500at 735.315 kb on - strandat 735.315 kb on - strand, within HGI48_RS03500at 735.327 kb on + strand, within HGI48_RS03500at 735.328 kb on - strand, within HGI48_RS03500at 735.358 kb on - strand, within HGI48_RS03500at 735.369 kb on + strand, within HGI48_RS03500at 735.369 kb on + strand, within HGI48_RS03500at 735.370 kb on - strand, within HGI48_RS03500at 735.370 kb on - strand, within HGI48_RS03500at 735.370 kb on - strand, within HGI48_RS03500at 735.370 kb on - strand, within HGI48_RS03500at 735.386 kb on + strand, within HGI48_RS03500at 735.386 kb on + strand, within HGI48_RS03500at 735.387 kb on - strand, within HGI48_RS03500at 735.387 kb on - strand, within HGI48_RS03500at 735.439 kb on + strand, within HGI48_RS03500at 735.440 kb on - strand, within HGI48_RS03500at 735.454 kb on - strandat 735.454 kb on - strandat 735.454 kb on - strand, within HGI48_RS03500at 735.506 kb on + strand, within HGI48_RS03500at 735.594 kb on + strand, within HGI48_RS03500at 735.614 kb on - strand, within HGI48_RS03500at 735.682 kb on - strand, within HGI48_RS03500at 735.700 kb on - strand, within HGI48_RS03500at 735.798 kb on + strand, within HGI48_RS03500at 735.798 kb on + strandat 735.799 kb on - strandat 735.844 kb on - strandat 735.844 kb on - strandat 735.864 kb on + strandat 736.084 kb on + strandat 736.085 kb on - strandat 736.085 kb on - strandat 736.087 kb on + strandat 736.087 kb on + strandat 736.098 kb on - strandat 736.139 kb on + strandat 736.214 kb on + strandat 736.214 kb on + strandat 736.215 kb on - strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.220 kb on + strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.221 kb on - strandat 736.277 kb on + strand, within HGI48_RS03505at 736.277 kb on + strand, within HGI48_RS03505at 736.278 kb on - strand, within HGI48_RS03505at 736.278 kb on - strand, within HGI48_RS03505at 736.278 kb on - strand, within HGI48_RS03505at 736.283 kb on - strand, within HGI48_RS03505at 736.348 kb on - strand, within HGI48_RS03505at 736.357 kb on - strand, within HGI48_RS03505at 736.364 kb on + strand, within HGI48_RS03505at 736.365 kb on - strand, within HGI48_RS03505at 736.626 kb on - strand, within HGI48_RS03505at 736.626 kb on - strand, within HGI48_RS03505at 736.626 kb on - strand, within HGI48_RS03505at 736.626 kb on - strand, within HGI48_RS03505at 736.841 kb on - strand, within HGI48_RS03505at 736.851 kb on + strand, within HGI48_RS03505at 736.852 kb on - strand, within HGI48_RS03505at 736.852 kb on - strand, within HGI48_RS03505at 736.858 kb on + strand, within HGI48_RS03505at 736.896 kb on + strand, within HGI48_RS03505at 736.896 kb on + strand, within HGI48_RS03505at 736.897 kb on - strand, within HGI48_RS03505at 736.897 kb on - strand, within HGI48_RS03505at 736.897 kb on - strand, within HGI48_RS03505at 736.897 kb on - strand, within HGI48_RS03505at 736.913 kb on + strand, within HGI48_RS03505at 736.913 kb on + strand, within HGI48_RS03505at 736.914 kb on - strand, within HGI48_RS03505at 736.914 kb on - strand, within HGI48_RS03505at 736.914 kb on - strand, within HGI48_RS03505at 736.929 kb on + strand, within HGI48_RS03505

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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733,726 - HGI48_RS03490 0.69 -0.1
733,773 + HGI48_RS03490 0.72 +0.8
733,815 + HGI48_RS03490 0.75 -0.3
733,863 + +0.4
733,974 - HGI48_RS03490 0.87 +0.7
733,979 + HGI48_RS03490 0.87 +1.6
733,979 + HGI48_RS03490 0.87 +0.5
733,980 - HGI48_RS03490 0.87 -2.4
734,003 + HGI48_RS03490 0.89 +0.6
734,004 - HGI48_RS03490 0.89 -0.9
734,088 + -2.4
734,089 - -0.1
734,092 + +0.2
734,156 + -0.4
734,156 + +0.8
734,159 - +0.1
734,247 - HGI48_RS03495 0.18 +2.1
734,444 - HGI48_RS03495 0.74 +0.7
734,497 + HGI48_RS03495 0.89 +2.4
734,681 + -0.6
734,857 - HGI48_RS03500 0.16 -0.3
734,916 + HGI48_RS03500 0.21 -1.9
734,923 - HGI48_RS03500 0.21 -0.6
734,923 - HGI48_RS03500 0.21 +0.2
735,015 + HGI48_RS03500 0.28 -1.1
735,016 - HGI48_RS03500 0.29 -0.6
735,019 + HGI48_RS03500 0.29 -2.2
735,020 - HGI48_RS03500 0.29 -2.2
735,020 - HGI48_RS03500 0.29 -0.6
735,022 - HGI48_RS03500 0.29 -0.9
735,114 + HGI48_RS03500 0.36 -0.6
735,208 - HGI48_RS03500 0.44 +0.5
735,208 - HGI48_RS03500 0.44 -0.3
735,312 + HGI48_RS03500 0.52 +0.9
735,312 + HGI48_RS03500 0.52 -1.4
735,312 + HGI48_RS03500 0.52 -0.9
735,313 - HGI48_RS03500 0.52 -1.4
735,313 - -0.6
735,313 - HGI48_RS03500 0.52 -0.4
735,313 - -0.6
735,313 - HGI48_RS03500 0.52 -0.5
735,313 - HGI48_RS03500 0.52 +0.2
735,313 - HGI48_RS03500 0.52 +2.4
735,314 + HGI48_RS03500 0.52 +0.4
735,314 + HGI48_RS03500 0.52 -0.5
735,314 + HGI48_RS03500 0.52 +0.1
735,314 + HGI48_RS03500 0.52 -2.2
735,314 + +0.4
735,315 - HGI48_RS03500 0.52 -0.4
735,315 - HGI48_RS03500 0.52 +1.1
735,315 - HGI48_RS03500 0.52 -0.1
735,315 - HGI48_RS03500 0.52 +1.5
735,315 - +1.9
735,315 - HGI48_RS03500 0.52 +0.7
735,327 + HGI48_RS03500 0.53 +0.2
735,328 - HGI48_RS03500 0.53 +0.9
735,358 - HGI48_RS03500 0.55 +0.1
735,369 + HGI48_RS03500 0.56 -2.2
735,369 + HGI48_RS03500 0.56 +0.3
735,370 - HGI48_RS03500 0.56 -2.1
735,370 - HGI48_RS03500 0.56 +1.4
735,370 - HGI48_RS03500 0.56 -0.9
735,370 - HGI48_RS03500 0.56 -1.1
735,386 + HGI48_RS03500 0.57 -0.7
735,386 + HGI48_RS03500 0.57 +0.3
735,387 - HGI48_RS03500 0.58 -0.5
735,387 - HGI48_RS03500 0.58 -0.9
735,439 + HGI48_RS03500 0.62 +0.4
735,440 - HGI48_RS03500 0.62 +0.9
735,454 - +2.4
735,454 - -0.6
735,454 - HGI48_RS03500 0.63 +1.3
735,506 + HGI48_RS03500 0.67 -0.1
735,594 + HGI48_RS03500 0.74 -0.6
735,614 - HGI48_RS03500 0.75 -0.1
735,682 - HGI48_RS03500 0.81 -0.6
735,700 - HGI48_RS03500 0.82 -3.1
735,798 + HGI48_RS03500 0.90 -3.1
735,798 + -0.6
735,799 - +0.4
735,844 - -1.1
735,844 - -1.1
735,864 + +0.7
736,084 + +0.4
736,085 - -0.6
736,085 - -0.4
736,087 + -1.1
736,087 + +0.1
736,098 - -2.9
736,139 + -0.6
736,214 + +0.5
736,214 + -1.9
736,215 - -1.1
736,220 + +0.9
736,220 + -0.6
736,220 + +0.6
736,220 + -0.1
736,220 + -2.1
736,220 + -2.6
736,220 + -0.5
736,220 + -1.1
736,220 + +0.4
736,220 + -0.2
736,220 + +1.2
736,220 + -0.2
736,220 + -2.9
736,220 + -2.1
736,221 - +0.9
736,221 - -0.6
736,221 - +0.4
736,221 - -0.6
736,221 - +0.9
736,221 - -0.4
736,221 - -0.1
736,221 - +1.2
736,221 - -0.3
736,221 - -0.7
736,221 - +0.9
736,221 - +1.5
736,221 - +0.6
736,221 - -0.6
736,277 + HGI48_RS03505 0.11 -0.3
736,277 + HGI48_RS03505 0.11 +0.7
736,278 - HGI48_RS03505 0.11 -1.4
736,278 - HGI48_RS03505 0.11 -0.4
736,278 - HGI48_RS03505 0.11 +0.7
736,283 - HGI48_RS03505 0.11 -0.1
736,348 - HGI48_RS03505 0.13 +0.9
736,357 - HGI48_RS03505 0.13 -0.9
736,364 + HGI48_RS03505 0.13 +0.1
736,365 - HGI48_RS03505 0.13 -0.9
736,626 - HGI48_RS03505 0.22 -0.6
736,626 - HGI48_RS03505 0.22 +0.9
736,626 - HGI48_RS03505 0.22 +0.4
736,626 - HGI48_RS03505 0.22 -0.1
736,841 - HGI48_RS03505 0.29 -0.9
736,851 + HGI48_RS03505 0.29 -2.2
736,852 - HGI48_RS03505 0.29 -0.1
736,852 - HGI48_RS03505 0.29 -0.6
736,858 + HGI48_RS03505 0.29 +0.6
736,896 + HGI48_RS03505 0.30 -1.8
736,896 + HGI48_RS03505 0.30 -0.1
736,897 - HGI48_RS03505 0.30 -1.1
736,897 - HGI48_RS03505 0.30 -1.1
736,897 - HGI48_RS03505 0.30 +1.2
736,897 - HGI48_RS03505 0.30 -0.9
736,913 + HGI48_RS03505 0.31 +0.4
736,913 + HGI48_RS03505 0.31 -2.1
736,914 - HGI48_RS03505 0.31 +1.2
736,914 - HGI48_RS03505 0.31 -0.9
736,914 - HGI48_RS03505 0.31 -1.4
736,929 + HGI48_RS03505 0.31 -0.6

Or see this region's nucleotide sequence