Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03015

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02995 and HGI48_RS03000 overlap by 1 nucleotidesHGI48_RS03000 and HGI48_RS03005 are separated by 3 nucleotidesHGI48_RS03005 and HGI48_RS03010 overlap by 14 nucleotidesHGI48_RS03010 and HGI48_RS03015 overlap by 4 nucleotidesHGI48_RS03015 and HGI48_RS03020 are separated by 77 nucleotidesHGI48_RS03020 and HGI48_RS03025 overlap by 8 nucleotides HGI48_RS02995: HGI48_RS02995 - head completion/stabilization protein, at 643,537 to 644,001 _RS02995 HGI48_RS03000: HGI48_RS03000 - tail protein X, at 644,001 to 644,204 _RS03000 HGI48_RS03005: HGI48_RS03005 - phage holin family protein, at 644,208 to 644,504 _RS03005 HGI48_RS03010: HGI48_RS03010 - glycoside hydrolase family 104 protein, at 644,491 to 644,982 _RS03010 HGI48_RS03015: HGI48_RS03015 - LysB family phage lysis regulatory protein, at 644,979 to 645,428 _RS03015 HGI48_RS03020: HGI48_RS03020 - phage tail protein, at 645,506 to 645,937 _RS03020 HGI48_RS03025: HGI48_RS03025 - phage virion morphogenesis protein, at 645,930 to 646,373 _RS03025 Position (kb) 644 645 646Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 644.000 kb on - strandat 644.000 kb on - strandat 644.207 kb on + strandat 644.207 kb on + strandat 644.208 kb on - strandat 644.208 kb on - strandat 644.208 kb on - strandat 644.228 kb on + strandat 644.229 kb on - strandat 644.229 kb on - strandat 644.502 kb on + strandat 644.503 kb on - strandat 644.717 kb on - strand, within HGI48_RS03010at 644.728 kb on + strand, within HGI48_RS03010at 644.728 kb on + strand, within HGI48_RS03010at 644.729 kb on - strand, within HGI48_RS03010at 644.729 kb on - strand, within HGI48_RS03010at 644.729 kb on - strandat 644.746 kb on + strandat 644.746 kb on + strand, within HGI48_RS03010at 644.746 kb on + strand, within HGI48_RS03010at 644.746 kb on + strandat 644.746 kb on + strand, within HGI48_RS03010at 644.746 kb on + strand, within HGI48_RS03010at 644.747 kb on - strand, within HGI48_RS03010at 644.747 kb on - strand, within HGI48_RS03010at 644.747 kb on - strandat 644.747 kb on - strand, within HGI48_RS03010at 644.747 kb on - strand, within HGI48_RS03010at 644.748 kb on + strand, within HGI48_RS03010at 644.748 kb on + strand, within HGI48_RS03010at 644.841 kb on - strand, within HGI48_RS03010at 644.853 kb on + strand, within HGI48_RS03010at 644.880 kb on + strand, within HGI48_RS03010at 644.880 kb on + strand, within HGI48_RS03010at 644.880 kb on + strand, within HGI48_RS03010at 644.881 kb on - strand, within HGI48_RS03010at 644.953 kb on + strandat 644.953 kb on + strandat 644.954 kb on - strandat 645.016 kb on + strandat 645.016 kb on + strandat 645.016 kb on + strandat 645.016 kb on + strandat 645.016 kb on + strandat 645.017 kb on - strandat 645.017 kb on - strandat 645.017 kb on - strandat 645.305 kb on + strand, within HGI48_RS03015at 645.305 kb on + strand, within HGI48_RS03015at 645.305 kb on + strand, within HGI48_RS03015at 645.305 kb on + strandat 645.305 kb on + strand, within HGI48_RS03015at 645.305 kb on + strandat 645.305 kb on + strandat 645.305 kb on + strand, within HGI48_RS03015at 645.305 kb on + strand, within HGI48_RS03015at 645.306 kb on - strand, within HGI48_RS03015at 645.306 kb on - strand, within HGI48_RS03015at 645.306 kb on - strandat 645.306 kb on - strand, within HGI48_RS03015at 645.306 kb on - strandat 645.309 kb on - strand, within HGI48_RS03015at 645.487 kb on - strandat 645.487 kb on - strandat 645.523 kb on - strandat 645.525 kb on + strandat 645.525 kb on + strandat 645.526 kb on - strandat 645.537 kb on + strandat 645.538 kb on - strandat 645.538 kb on - strandat 645.541 kb on + strandat 645.542 kb on - strandat 645.542 kb on - strandat 645.554 kb on + strand, within HGI48_RS03020at 645.555 kb on - strand, within HGI48_RS03020at 645.565 kb on + strand, within HGI48_RS03020at 645.565 kb on + strand, within HGI48_RS03020at 645.641 kb on + strand, within HGI48_RS03020at 645.641 kb on + strandat 645.648 kb on - strand, within HGI48_RS03020at 645.648 kb on - strand, within HGI48_RS03020at 645.674 kb on + strand, within HGI48_RS03020at 645.674 kb on + strandat 645.675 kb on - strand, within HGI48_RS03020at 645.694 kb on - strandat 645.729 kb on - strand, within HGI48_RS03020at 645.915 kb on - strandat 645.921 kb on + strandat 645.921 kb on + strandat 645.921 kb on + strandat 645.922 kb on - strandat 645.922 kb on - strandat 645.922 kb on - strandat 645.998 kb on + strand, within HGI48_RS03025at 645.999 kb on - strand, within HGI48_RS03025at 645.999 kb on - strand, within HGI48_RS03025at 645.999 kb on - strand, within HGI48_RS03025at 645.999 kb on - strand, within HGI48_RS03025at 646.018 kb on + strandat 646.030 kb on + strand, within HGI48_RS03025at 646.030 kb on + strandat 646.031 kb on - strand, within HGI48_RS03025at 646.115 kb on + strand, within HGI48_RS03025at 646.115 kb on + strand, within HGI48_RS03025at 646.153 kb on + strand, within HGI48_RS03025at 646.153 kb on + strand, within HGI48_RS03025at 646.153 kb on + strandat 646.153 kb on + strand, within HGI48_RS03025at 646.153 kb on + strand, within HGI48_RS03025at 646.153 kb on + strand, within HGI48_RS03025at 646.154 kb on - strand, within HGI48_RS03025at 646.154 kb on - strand, within HGI48_RS03025at 646.154 kb on - strand, within HGI48_RS03025at 646.154 kb on - strand, within HGI48_RS03025at 646.154 kb on - strand, within HGI48_RS03025at 646.167 kb on + strand, within HGI48_RS03025at 646.293 kb on + strandat 646.294 kb on - strand, within HGI48_RS03025at 646.294 kb on - strand, within HGI48_RS03025at 646.395 kb on + strandat 646.395 kb on + strandat 646.395 kb on + strandat 646.395 kb on + strandat 646.395 kb on + strandat 646.396 kb on - strandat 646.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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644,000 - +1.0
644,000 - -0.1
644,207 + -1.1
644,207 + +1.4
644,208 - +1.1
644,208 - +1.4
644,208 - -0.2
644,228 + -1.0
644,229 - +0.1
644,229 - +0.9
644,502 + +1.3
644,503 - -2.0
644,717 - HGI48_RS03010 0.46 +0.4
644,728 + HGI48_RS03010 0.48 -0.7
644,728 + HGI48_RS03010 0.48 -1.4
644,729 - HGI48_RS03010 0.48 +0.6
644,729 - HGI48_RS03010 0.48 +0.3
644,729 - -0.6
644,746 + +3.0
644,746 + HGI48_RS03010 0.52 +0.3
644,746 + HGI48_RS03010 0.52 +0.0
644,746 + +4.6
644,746 + HGI48_RS03010 0.52 +0.7
644,746 + HGI48_RS03010 0.52 +1.4
644,747 - HGI48_RS03010 0.52 +1.6
644,747 - HGI48_RS03010 0.52 -0.3
644,747 - -0.6
644,747 - HGI48_RS03010 0.52 -0.6
644,747 - HGI48_RS03010 0.52 -0.3
644,748 + HGI48_RS03010 0.52 -0.2
644,748 + HGI48_RS03010 0.52 +1.0
644,841 - HGI48_RS03010 0.71 -0.9
644,853 + HGI48_RS03010 0.74 +1.8
644,880 + HGI48_RS03010 0.79 -1.0
644,880 + HGI48_RS03010 0.79 +0.6
644,880 + HGI48_RS03010 0.79 -0.3
644,881 - HGI48_RS03010 0.79 -0.5
644,953 + -0.6
644,953 + -0.8
644,954 - +0.0
645,016 + +0.7
645,016 + +1.0
645,016 + -0.3
645,016 + +1.4
645,016 + -1.3
645,017 - -1.6
645,017 - -0.6
645,017 - -2.5
645,305 + HGI48_RS03015 0.72 -0.9
645,305 + HGI48_RS03015 0.72 -0.3
645,305 + HGI48_RS03015 0.72 +1.2
645,305 + +2.0
645,305 + HGI48_RS03015 0.72 +0.4
645,305 + +1.0
645,305 + -0.6
645,305 + HGI48_RS03015 0.72 +0.4
645,305 + HGI48_RS03015 0.72 -1.0
645,306 - HGI48_RS03015 0.73 -0.5
645,306 - HGI48_RS03015 0.73 +0.3
645,306 - +0.4
645,306 - HGI48_RS03015 0.73 -2.3
645,306 - +1.0
645,309 - HGI48_RS03015 0.73 -0.9
645,487 - -1.6
645,487 - +1.4
645,523 - -2.0
645,525 + +0.9
645,525 + +0.6
645,526 - -1.6
645,537 + +1.4
645,538 - -0.6
645,538 - +1.6
645,541 + -0.6
645,542 - -1.6
645,542 - +0.0
645,554 + HGI48_RS03020 0.11 +0.5
645,555 - HGI48_RS03020 0.11 +0.2
645,565 + HGI48_RS03020 0.14 -2.7
645,565 + HGI48_RS03020 0.14 +0.1
645,641 + HGI48_RS03020 0.31 +1.0
645,641 + +0.4
645,648 - HGI48_RS03020 0.33 -0.2
645,648 - HGI48_RS03020 0.33 -0.1
645,674 + HGI48_RS03020 0.39 -1.0
645,674 + +1.4
645,675 - HGI48_RS03020 0.39 +0.0
645,694 - -0.6
645,729 - HGI48_RS03020 0.52 -1.6
645,915 - -1.0
645,921 + -0.2
645,921 + +0.0
645,921 + -0.9
645,922 - -0.3
645,922 - -0.3
645,922 - +0.5
645,998 + HGI48_RS03025 0.15 -0.5
645,999 - HGI48_RS03025 0.16 -2.7
645,999 - HGI48_RS03025 0.16 -1.8
645,999 - HGI48_RS03025 0.16 -0.2
645,999 - HGI48_RS03025 0.16 -1.3
646,018 + +2.0
646,030 + HGI48_RS03025 0.23 -1.2
646,030 + +0.4
646,031 - HGI48_RS03025 0.23 +0.8
646,115 + HGI48_RS03025 0.42 -1.9
646,115 + HGI48_RS03025 0.42 +0.4
646,153 + HGI48_RS03025 0.50 -1.8
646,153 + HGI48_RS03025 0.50 -0.3
646,153 + +0.0
646,153 + HGI48_RS03025 0.50 +0.4
646,153 + HGI48_RS03025 0.50 +1.1
646,153 + HGI48_RS03025 0.50 -0.6
646,154 - HGI48_RS03025 0.50 -2.0
646,154 - HGI48_RS03025 0.50 -1.8
646,154 - HGI48_RS03025 0.50 -2.0
646,154 - HGI48_RS03025 0.50 -3.3
646,154 - HGI48_RS03025 0.50 +0.6
646,167 + HGI48_RS03025 0.53 -1.0
646,293 + +2.0
646,294 - HGI48_RS03025 0.82 +1.3
646,294 - HGI48_RS03025 0.82 +1.9
646,395 + +0.2
646,395 + +0.2
646,395 + +0.8
646,395 + -1.2
646,395 + +0.1
646,396 - +1.0
646,419 + -3.1

Or see this region's nucleotide sequence