Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02925 and HGI48_RS02930 overlap by 4 nucleotides HGI48_RS02930 and HGI48_RS02935 overlap by 1 nucleotides HGI48_RS02935 and HGI48_RS02940 overlap by 4 nucleotides
HGI48_RS02925: HGI48_RS02925 - 3'-5' exoribonuclease, at 629,758 to 630,351
_RS02925
HGI48_RS02930: HGI48_RS02930 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 630,348 to 631,283
_RS02930
HGI48_RS02935: HGI48_RS02935 - DNA cytosine methyltransferase, at 631,283 to 632,200
_RS02935
HGI48_RS02940: HGI48_RS02940 - phosphoadenosine phosphosulfate reductase family protein, at 632,197 to 633,201
_RS02940
Position (kb) 631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 630.319 kb on - strand at 630.319 kb on - strand at 630.319 kb on - strand at 630.362 kb on + strand at 630.363 kb on - strand at 630.363 kb on - strand at 630.363 kb on - strand at 630.474 kb on - strand, within HGI48_RS02930 at 630.490 kb on - strand at 630.490 kb on - strand, within HGI48_RS02930 at 630.490 kb on - strand, within HGI48_RS02930 at 630.494 kb on - strand, within HGI48_RS02930 at 630.609 kb on + strand, within HGI48_RS02930 at 630.609 kb on + strand, within HGI48_RS02930 at 630.609 kb on + strand, within HGI48_RS02930 at 630.610 kb on - strand, within HGI48_RS02930 at 630.610 kb on - strand at 630.610 kb on - strand, within HGI48_RS02930 at 630.610 kb on - strand, within HGI48_RS02930 at 630.610 kb on - strand, within HGI48_RS02930 at 630.610 kb on - strand, within HGI48_RS02930 at 630.610 kb on - strand, within HGI48_RS02930 at 630.632 kb on + strand, within HGI48_RS02930 at 630.633 kb on - strand, within HGI48_RS02930 at 630.633 kb on - strand, within HGI48_RS02930 at 630.674 kb on - strand, within HGI48_RS02930 at 630.682 kb on - strand, within HGI48_RS02930 at 630.718 kb on - strand, within HGI48_RS02930 at 630.718 kb on - strand, within HGI48_RS02930 at 630.718 kb on - strand, within HGI48_RS02930 at 630.757 kb on - strand, within HGI48_RS02930 at 630.768 kb on + strand, within HGI48_RS02930 at 630.769 kb on - strand, within HGI48_RS02930 at 630.831 kb on - strand, within HGI48_RS02930 at 630.857 kb on - strand, within HGI48_RS02930 at 630.857 kb on - strand, within HGI48_RS02930 at 630.857 kb on - strand at 630.885 kb on - strand, within HGI48_RS02930 at 630.889 kb on - strand, within HGI48_RS02930 at 630.889 kb on - strand, within HGI48_RS02930 at 630.889 kb on - strand, within HGI48_RS02930 at 630.889 kb on - strand, within HGI48_RS02930 at 631.066 kb on - strand, within HGI48_RS02930 at 631.140 kb on - strand, within HGI48_RS02930 at 631.237 kb on - strand at 631.299 kb on - strand at 631.299 kb on - strand at 631.299 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.302 kb on - strand at 631.418 kb on - strand, within HGI48_RS02935 at 631.467 kb on - strand, within HGI48_RS02935 at 631.467 kb on - strand, within HGI48_RS02935 at 631.467 kb on - strand at 631.467 kb on - strand, within HGI48_RS02935 at 631.581 kb on + strand, within HGI48_RS02935 at 631.581 kb on + strand, within HGI48_RS02935 at 631.582 kb on - strand at 631.582 kb on - strand, within HGI48_RS02935 at 631.651 kb on + strand, within HGI48_RS02935 at 631.680 kb on + strand at 631.681 kb on - strand at 631.681 kb on - strand, within HGI48_RS02935 at 631.681 kb on - strand, within HGI48_RS02935 at 631.681 kb on - strand, within HGI48_RS02935 at 631.870 kb on + strand, within HGI48_RS02935 at 631.871 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 631.973 kb on - strand, within HGI48_RS02935 at 632.178 kb on - strand at 632.178 kb on - strand at 632.201 kb on + strand at 632.201 kb on + strand at 632.237 kb on + strand at 632.237 kb on + strand at 632.237 kb on + strand at 632.237 kb on + strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.238 kb on - strand at 632.301 kb on - strand, within HGI48_RS02940 at 632.366 kb on - strand, within HGI48_RS02940 at 632.399 kb on + strand, within HGI48_RS02940 at 632.400 kb on - strand at 632.400 kb on - strand, within HGI48_RS02940 at 632.400 kb on - strand, within HGI48_RS02940 at 632.400 kb on - strand, within HGI48_RS02940 at 632.485 kb on - strand, within HGI48_RS02940 at 632.596 kb on - strand, within HGI48_RS02940 at 632.596 kb on - strand, within HGI48_RS02940 at 632.637 kb on - strand, within HGI48_RS02940 at 632.653 kb on - strand at 632.672 kb on - strand, within HGI48_RS02940 at 632.672 kb on - strand, within HGI48_RS02940 at 632.872 kb on - strand, within HGI48_RS02940 at 632.887 kb on - strand, within HGI48_RS02940 at 632.887 kb on - strand, within HGI48_RS02940 at 632.927 kb on + strand at 632.928 kb on - strand, within HGI48_RS02940 at 633.057 kb on - strand at 633.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 630,319 - -0.1 630,319 - +2.8 630,319 - +0.0 630,362 + -0.6 630,363 - +1.0 630,363 - +0.9 630,363 - -2.7 630,474 - HGI48_RS02930 0.13 -1.1 630,490 - +2.0 630,490 - HGI48_RS02930 0.15 -1.0 630,490 - HGI48_RS02930 0.15 -0.6 630,494 - HGI48_RS02930 0.16 -1.0 630,609 + HGI48_RS02930 0.28 +2.3 630,609 + HGI48_RS02930 0.28 +0.4 630,609 + HGI48_RS02930 0.28 -0.3 630,610 - HGI48_RS02930 0.28 -0.3 630,610 - -0.6 630,610 - HGI48_RS02930 0.28 +0.9 630,610 - HGI48_RS02930 0.28 +2.7 630,610 - HGI48_RS02930 0.28 +0.8 630,610 - HGI48_RS02930 0.28 +0.5 630,610 - HGI48_RS02930 0.28 -1.3 630,632 + HGI48_RS02930 0.30 -0.3 630,633 - HGI48_RS02930 0.30 +1.4 630,633 - HGI48_RS02930 0.30 +0.2 630,674 - HGI48_RS02930 0.35 +1.2 630,682 - HGI48_RS02930 0.36 -0.6 630,718 - HGI48_RS02930 0.40 -1.2 630,718 - HGI48_RS02930 0.40 -2.2 630,718 - HGI48_RS02930 0.40 +0.3 630,757 - HGI48_RS02930 0.44 +0.2 630,768 + HGI48_RS02930 0.45 -1.3 630,769 - HGI48_RS02930 0.45 -1.0 630,831 - HGI48_RS02930 0.52 -1.3 630,857 - HGI48_RS02930 0.54 +0.0 630,857 - HGI48_RS02930 0.54 -2.0 630,857 - +0.0 630,885 - HGI48_RS02930 0.57 -3.3 630,889 - HGI48_RS02930 0.58 -0.2 630,889 - HGI48_RS02930 0.58 +0.3 630,889 - HGI48_RS02930 0.58 -1.2 630,889 - HGI48_RS02930 0.58 +0.3 631,066 - HGI48_RS02930 0.77 -0.7 631,140 - HGI48_RS02930 0.85 +0.3 631,237 - -1.3 631,299 - -0.6 631,299 - -0.2 631,299 - -1.6 631,302 - +2.0 631,302 - -0.2 631,302 - -2.0 631,302 - -1.0 631,302 - -2.3 631,418 - HGI48_RS02935 0.15 -1.8 631,467 - HGI48_RS02935 0.20 -0.9 631,467 - HGI48_RS02935 0.20 +1.3 631,467 - +1.0 631,467 - HGI48_RS02935 0.20 +1.1 631,581 + HGI48_RS02935 0.32 -1.6 631,581 + HGI48_RS02935 0.32 -0.4 631,582 - -0.6 631,582 - HGI48_RS02935 0.33 -3.1 631,651 + HGI48_RS02935 0.40 +0.8 631,680 + +0.0 631,681 - +2.6 631,681 - HGI48_RS02935 0.43 -0.3 631,681 - HGI48_RS02935 0.43 +0.2 631,681 - HGI48_RS02935 0.43 +2.5 631,870 + HGI48_RS02935 0.64 -1.0 631,871 - HGI48_RS02935 0.64 +0.1 631,973 - HGI48_RS02935 0.75 +0.0 631,973 - HGI48_RS02935 0.75 -1.5 631,973 - HGI48_RS02935 0.75 +1.8 631,973 - HGI48_RS02935 0.75 -1.8 631,973 - HGI48_RS02935 0.75 +0.0 631,973 - HGI48_RS02935 0.75 +2.7 631,973 - HGI48_RS02935 0.75 +0.8 632,178 - -0.6 632,178 - -1.4 632,201 + +0.3 632,201 + -1.0 632,237 + -0.3 632,237 + -2.0 632,237 + +0.7 632,237 + -0.3 632,238 - -2.0 632,238 - -1.0 632,238 - -0.5 632,238 - -1.2 632,238 - -2.6 632,301 - HGI48_RS02940 0.10 -0.3 632,366 - HGI48_RS02940 0.17 -1.3 632,399 + HGI48_RS02940 0.20 -0.2 632,400 - +0.0 632,400 - HGI48_RS02940 0.20 -2.5 632,400 - HGI48_RS02940 0.20 -2.0 632,400 - HGI48_RS02940 0.20 -1.3 632,485 - HGI48_RS02940 0.29 -0.2 632,596 - HGI48_RS02940 0.40 -0.1 632,596 - HGI48_RS02940 0.40 -1.0 632,637 - HGI48_RS02940 0.44 -0.8 632,653 - -0.6 632,672 - HGI48_RS02940 0.47 +0.6 632,672 - HGI48_RS02940 0.47 -2.2 632,872 - HGI48_RS02940 0.67 +0.5 632,887 - HGI48_RS02940 0.69 +0.3 632,887 - HGI48_RS02940 0.69 -2.7 632,927 + +1.0 632,928 - HGI48_RS02940 0.73 +1.3 633,057 - +0.0 633,109 - -0.5
Or see this region's nucleotide sequence