Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02575

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02570 and HGI48_RS02575 are separated by 33 nucleotidesHGI48_RS02575 and HGI48_RS02580 are separated by 0 nucleotidesHGI48_RS02580 and HGI48_RS02585 are separated by 27 nucleotides HGI48_RS02570: HGI48_RS02570 - Gfo/Idh/MocA family oxidoreductase, at 554,800 to 555,951 _RS02570 HGI48_RS02575: HGI48_RS02575 - heavy metal translocating P-type ATPase, at 555,985 to 558,390 _RS02575 HGI48_RS02580: HGI48_RS02580 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 558,391 to 558,822 _RS02580 HGI48_RS02585: HGI48_RS02585 - LacI family DNA-binding transcriptional regulator, at 558,850 to 559,872 _RS02585 Position (kb) 555 556 557 558 559Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 555.024 kb on + strand, within HGI48_RS02570at 555.024 kb on + strandat 555.025 kb on - strand, within HGI48_RS02570at 555.054 kb on - strand, within HGI48_RS02570at 555.065 kb on - strand, within HGI48_RS02570at 555.065 kb on - strand, within HGI48_RS02570at 555.065 kb on - strand, within HGI48_RS02570at 555.190 kb on + strand, within HGI48_RS02570at 555.191 kb on - strand, within HGI48_RS02570at 555.237 kb on + strandat 555.238 kb on - strand, within HGI48_RS02570at 555.238 kb on - strand, within HGI48_RS02570at 555.238 kb on - strand, within HGI48_RS02570at 555.307 kb on + strandat 555.307 kb on + strandat 555.308 kb on - strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.330 kb on + strand, within HGI48_RS02570at 555.330 kb on + strandat 555.330 kb on + strand, within HGI48_RS02570at 555.330 kb on + strand, within HGI48_RS02570at 555.331 kb on - strand, within HGI48_RS02570at 555.331 kb on - strandat 555.331 kb on - strand, within HGI48_RS02570at 555.331 kb on - strand, within HGI48_RS02570at 555.331 kb on - strand, within HGI48_RS02570at 555.453 kb on + strand, within HGI48_RS02570at 555.453 kb on + strand, within HGI48_RS02570at 555.475 kb on + strand, within HGI48_RS02570at 555.475 kb on + strand, within HGI48_RS02570at 555.484 kb on - strandat 555.565 kb on + strand, within HGI48_RS02570at 555.566 kb on - strandat 555.566 kb on - strand, within HGI48_RS02570at 555.566 kb on - strand, within HGI48_RS02570at 555.730 kb on + strand, within HGI48_RS02570at 555.731 kb on - strand, within HGI48_RS02570at 555.731 kb on - strand, within HGI48_RS02570at 555.738 kb on + strand, within HGI48_RS02570at 555.745 kb on + strand, within HGI48_RS02570at 555.746 kb on - strand, within HGI48_RS02570at 555.746 kb on - strand, within HGI48_RS02570at 555.746 kb on - strandat 555.746 kb on - strand, within HGI48_RS02570at 555.854 kb on + strandat 555.862 kb on - strandat 555.862 kb on - strandat 555.891 kb on + strandat 555.979 kb on + strandat 555.979 kb on + strandat 555.986 kb on + strandat 555.987 kb on - strandat 556.069 kb on + strandat 556.182 kb on + strandat 556.183 kb on - strandat 556.417 kb on + strand, within HGI48_RS02575at 556.417 kb on + strand, within HGI48_RS02575at 556.417 kb on + strand, within HGI48_RS02575at 556.418 kb on - strand, within HGI48_RS02575at 556.418 kb on - strand, within HGI48_RS02575at 556.418 kb on - strandat 556.445 kb on + strand, within HGI48_RS02575at 556.477 kb on + strand, within HGI48_RS02575at 556.477 kb on + strand, within HGI48_RS02575at 556.478 kb on - strand, within HGI48_RS02575at 556.683 kb on - strand, within HGI48_RS02575at 556.960 kb on + strandat 556.961 kb on - strand, within HGI48_RS02575at 557.081 kb on + strand, within HGI48_RS02575at 557.081 kb on + strand, within HGI48_RS02575at 557.081 kb on + strand, within HGI48_RS02575at 557.081 kb on + strand, within HGI48_RS02575at 557.082 kb on - strand, within HGI48_RS02575at 557.166 kb on - strand, within HGI48_RS02575at 557.166 kb on - strand, within HGI48_RS02575at 557.166 kb on - strand, within HGI48_RS02575at 557.421 kb on + strand, within HGI48_RS02575at 557.507 kb on - strand, within HGI48_RS02575at 557.507 kb on - strand, within HGI48_RS02575at 557.724 kb on - strand, within HGI48_RS02575at 557.724 kb on - strand, within HGI48_RS02575at 557.724 kb on - strand, within HGI48_RS02575at 557.957 kb on + strand, within HGI48_RS02575at 558.349 kb on + strandat 558.349 kb on + strandat 558.349 kb on + strandat 558.350 kb on - strandat 558.363 kb on + strandat 558.370 kb on + strandat 558.372 kb on + strandat 558.373 kb on - strandat 558.464 kb on + strand, within HGI48_RS02580at 558.464 kb on + strand, within HGI48_RS02580at 558.465 kb on - strandat 558.465 kb on - strand, within HGI48_RS02580at 558.484 kb on - strandat 558.496 kb on + strand, within HGI48_RS02580at 558.505 kb on + strand, within HGI48_RS02580at 558.505 kb on + strand, within HGI48_RS02580at 558.506 kb on - strand, within HGI48_RS02580at 558.538 kb on - strandat 558.683 kb on + strandat 558.683 kb on + strand, within HGI48_RS02580at 558.683 kb on + strandat 558.684 kb on - strand, within HGI48_RS02580at 558.684 kb on - strand, within HGI48_RS02580at 558.684 kb on - strand, within HGI48_RS02580at 558.807 kb on + strandat 558.981 kb on + strand, within HGI48_RS02585at 558.981 kb on + strand, within HGI48_RS02585at 558.982 kb on - strand, within HGI48_RS02585at 558.982 kb on - strandat 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strandat 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strandat 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strand, within HGI48_RS02585at 559.322 kb on + strandat 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.323 kb on - strand, within HGI48_RS02585at 559.372 kb on - strand, within HGI48_RS02585

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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555,024 + HGI48_RS02570 0.19 -0.3
555,024 + +1.0
555,025 - HGI48_RS02570 0.20 -0.3
555,054 - HGI48_RS02570 0.22 -0.2
555,065 - HGI48_RS02570 0.23 -1.2
555,065 - HGI48_RS02570 0.23 -1.8
555,065 - HGI48_RS02570 0.23 -1.8
555,190 + HGI48_RS02570 0.34 +1.2
555,191 - HGI48_RS02570 0.34 +0.4
555,237 + +1.0
555,238 - HGI48_RS02570 0.38 +0.0
555,238 - HGI48_RS02570 0.38 -0.8
555,238 - HGI48_RS02570 0.38 +1.6
555,307 + -0.6
555,307 + +0.0
555,308 - HGI48_RS02570 0.44 -2.0
555,328 + HGI48_RS02570 0.46 -0.3
555,328 + HGI48_RS02570 0.46 -2.4
555,328 + HGI48_RS02570 0.46 +0.6
555,328 + HGI48_RS02570 0.46 -0.1
555,329 - HGI48_RS02570 0.46 -0.6
555,329 - HGI48_RS02570 0.46 +1.0
555,329 - HGI48_RS02570 0.46 -1.6
555,329 - HGI48_RS02570 0.46 +0.1
555,329 - HGI48_RS02570 0.46 +0.3
555,330 + HGI48_RS02570 0.46 -0.8
555,330 + +0.0
555,330 + HGI48_RS02570 0.46 +0.1
555,330 + HGI48_RS02570 0.46 -2.0
555,331 - HGI48_RS02570 0.46 -1.0
555,331 - +0.0
555,331 - HGI48_RS02570 0.46 +0.2
555,331 - HGI48_RS02570 0.46 +1.0
555,331 - HGI48_RS02570 0.46 -1.8
555,453 + HGI48_RS02570 0.57 -1.2
555,453 + HGI48_RS02570 0.57 -0.8
555,475 + HGI48_RS02570 0.59 +0.5
555,475 + HGI48_RS02570 0.59 +0.8
555,484 - +2.4
555,565 + HGI48_RS02570 0.66 -0.6
555,566 - +2.6
555,566 - HGI48_RS02570 0.66 -0.4
555,566 - HGI48_RS02570 0.66 -0.6
555,730 + HGI48_RS02570 0.81 +0.2
555,731 - HGI48_RS02570 0.81 +0.5
555,731 - HGI48_RS02570 0.81 -1.6
555,738 + HGI48_RS02570 0.81 +0.4
555,745 + HGI48_RS02570 0.82 +0.6
555,746 - HGI48_RS02570 0.82 +0.7
555,746 - HGI48_RS02570 0.82 +0.6
555,746 - +1.7
555,746 - HGI48_RS02570 0.82 -0.6
555,854 + -1.3
555,862 - +0.7
555,862 - +0.0
555,891 + +1.3
555,979 + -1.0
555,979 + -1.3
555,986 + +3.5
555,987 - +0.4
556,069 + -1.3
556,182 + +1.6
556,183 - -0.3
556,417 + HGI48_RS02575 0.18 -2.0
556,417 + HGI48_RS02575 0.18 -2.2
556,417 + HGI48_RS02575 0.18 -0.8
556,418 - HGI48_RS02575 0.18 -2.3
556,418 - HGI48_RS02575 0.18 -5.2
556,418 - -0.6
556,445 + HGI48_RS02575 0.19 -2.4
556,477 + HGI48_RS02575 0.20 -0.2
556,477 + HGI48_RS02575 0.20 +1.3
556,478 - HGI48_RS02575 0.20 -1.9
556,683 - HGI48_RS02575 0.29 -1.3
556,960 + -0.6
556,961 - HGI48_RS02575 0.41 -1.9
557,081 + HGI48_RS02575 0.46 -2.3
557,081 + HGI48_RS02575 0.46 -2.4
557,081 + HGI48_RS02575 0.46 -3.3
557,081 + HGI48_RS02575 0.46 -2.2
557,082 - HGI48_RS02575 0.46 +0.0
557,166 - HGI48_RS02575 0.49 -0.4
557,166 - HGI48_RS02575 0.49 -2.9
557,166 - HGI48_RS02575 0.49 -1.0
557,421 + HGI48_RS02575 0.60 -3.0
557,507 - HGI48_RS02575 0.63 -1.3
557,507 - HGI48_RS02575 0.63 -1.2
557,724 - HGI48_RS02575 0.72 -1.8
557,724 - HGI48_RS02575 0.72 -1.6
557,724 - HGI48_RS02575 0.72 -2.3
557,957 + HGI48_RS02575 0.82 -1.0
558,349 + +0.7
558,349 + -2.0
558,349 + +0.5
558,350 - +1.6
558,363 + -1.0
558,370 + -0.8
558,372 + +0.2
558,373 - +0.3
558,464 + HGI48_RS02580 0.17 -0.5
558,464 + HGI48_RS02580 0.17 +0.2
558,465 - +0.4
558,465 - HGI48_RS02580 0.17 -0.6
558,484 - -0.6
558,496 + HGI48_RS02580 0.24 +0.2
558,505 + HGI48_RS02580 0.26 -3.9
558,505 + HGI48_RS02580 0.26 +2.0
558,506 - HGI48_RS02580 0.27 -0.6
558,538 - -0.6
558,683 + +0.0
558,683 + HGI48_RS02580 0.68 -0.9
558,683 + +2.0
558,684 - HGI48_RS02580 0.68 -0.3
558,684 - HGI48_RS02580 0.68 -1.8
558,684 - HGI48_RS02580 0.68 -0.3
558,807 + +1.0
558,981 + HGI48_RS02585 0.13 -0.6
558,981 + HGI48_RS02585 0.13 -1.8
558,982 - HGI48_RS02585 0.13 +0.3
558,982 - +1.0
559,322 + HGI48_RS02585 0.46 +0.2
559,322 + HGI48_RS02585 0.46 -0.7
559,322 + HGI48_RS02585 0.46 +0.4
559,322 + +1.0
559,322 + HGI48_RS02585 0.46 +0.5
559,322 + HGI48_RS02585 0.46 -0.3
559,322 + -0.6
559,322 + HGI48_RS02585 0.46 -0.8
559,322 + HGI48_RS02585 0.46 +1.3
559,322 + HGI48_RS02585 0.46 -1.3
559,322 + +1.0
559,323 - HGI48_RS02585 0.46 -1.0
559,323 - HGI48_RS02585 0.46 -1.0
559,323 - HGI48_RS02585 0.46 -0.6
559,323 - HGI48_RS02585 0.46 +0.0
559,323 - HGI48_RS02585 0.46 -1.6
559,323 - HGI48_RS02585 0.46 -1.6
559,323 - HGI48_RS02585 0.46 +0.4
559,323 - HGI48_RS02585 0.46 -1.3
559,372 - HGI48_RS02585 0.51 +1.7

Or see this region's nucleotide sequence