Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02385

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02380 and HGI48_RS02385 are separated by 80 nucleotidesHGI48_RS02385 and HGI48_RS02390 are separated by 129 nucleotidesHGI48_RS02390 and HGI48_RS02395 are separated by 15 nucleotides HGI48_RS02380: HGI48_RS02380 - DNA repair protein RadA, at 515,531 to 516,916 _RS02380 HGI48_RS02385: HGI48_RS02385 - phosphoserine phosphatase, at 516,997 to 517,974 _RS02385 HGI48_RS02390: HGI48_RS02390 - YtjB family periplasmic protein, at 518,104 to 518,784 _RS02390 HGI48_RS02395: HGI48_RS02395 - trans-aconitate 2-methyltransferase, at 518,800 to 519,576 _RS02395 Position (kb) 516 517 518Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 516.107 kb on + strand, within HGI48_RS02380at 516.108 kb on - strand, within HGI48_RS02380at 516.307 kb on - strand, within HGI48_RS02380at 516.464 kb on - strand, within HGI48_RS02380at 516.464 kb on - strand, within HGI48_RS02380at 516.464 kb on - strandat 516.464 kb on - strand, within HGI48_RS02380at 516.534 kb on + strand, within HGI48_RS02380at 516.807 kb on - strandat 516.883 kb on + strandat 516.883 kb on + strandat 516.884 kb on - strandat 516.884 kb on - strandat 516.921 kb on + strandat 516.921 kb on + strandat 516.921 kb on + strandat 516.921 kb on + strandat 516.921 kb on + strandat 516.922 kb on - strandat 516.922 kb on - strandat 516.922 kb on - strandat 516.932 kb on + strandat 516.932 kb on + strandat 516.941 kb on + strandat 516.941 kb on + strandat 516.942 kb on - strandat 516.942 kb on - strandat 516.942 kb on - strandat 516.944 kb on + strandat 516.944 kb on + strandat 516.944 kb on + strandat 516.944 kb on + strandat 516.944 kb on + strandat 516.945 kb on - strandat 516.945 kb on - strandat 516.957 kb on + strandat 516.958 kb on - strandat 517.227 kb on + strand, within HGI48_RS02385at 517.228 kb on - strand, within HGI48_RS02385at 517.230 kb on - strand, within HGI48_RS02385at 517.230 kb on - strand, within HGI48_RS02385at 517.230 kb on - strand, within HGI48_RS02385at 517.334 kb on + strand, within HGI48_RS02385at 517.334 kb on + strand, within HGI48_RS02385at 517.334 kb on + strand, within HGI48_RS02385at 517.335 kb on - strand, within HGI48_RS02385at 517.335 kb on - strand, within HGI48_RS02385at 517.346 kb on + strand, within HGI48_RS02385at 517.346 kb on + strand, within HGI48_RS02385at 517.347 kb on - strand, within HGI48_RS02385at 517.593 kb on + strand, within HGI48_RS02385at 517.594 kb on - strand, within HGI48_RS02385at 517.594 kb on - strand, within HGI48_RS02385at 517.667 kb on + strand, within HGI48_RS02385at 517.667 kb on + strand, within HGI48_RS02385at 517.668 kb on - strand, within HGI48_RS02385at 517.817 kb on - strand, within HGI48_RS02385at 517.819 kb on + strand, within HGI48_RS02385at 517.819 kb on + strand, within HGI48_RS02385at 517.820 kb on - strand, within HGI48_RS02385at 517.820 kb on - strand, within HGI48_RS02385at 517.823 kb on + strand, within HGI48_RS02385at 517.823 kb on + strand, within HGI48_RS02385at 517.824 kb on - strand, within HGI48_RS02385at 517.824 kb on - strand, within HGI48_RS02385at 517.824 kb on - strand, within HGI48_RS02385at 517.824 kb on - strand, within HGI48_RS02385at 517.844 kb on + strand, within HGI48_RS02385at 517.844 kb on + strand, within HGI48_RS02385at 517.845 kb on - strand, within HGI48_RS02385at 517.874 kb on + strand, within HGI48_RS02385at 517.955 kb on + strandat 517.956 kb on - strandat 517.956 kb on - strandat 517.979 kb on + strandat 517.979 kb on + strandat 517.979 kb on + strandat 517.980 kb on - strandat 517.983 kb on + strandat 517.984 kb on - strandat 517.984 kb on - strandat 517.984 kb on - strandat 518.046 kb on + strandat 518.047 kb on - strandat 518.047 kb on - strandat 518.098 kb on - strandat 518.098 kb on - strandat 518.098 kb on - strandat 518.133 kb on - strandat 518.133 kb on - strandat 518.133 kb on - strandat 518.133 kb on - strandat 518.183 kb on + strand, within HGI48_RS02390at 518.197 kb on + strand, within HGI48_RS02390at 518.198 kb on - strand, within HGI48_RS02390at 518.198 kb on - strand, within HGI48_RS02390at 518.378 kb on + strand, within HGI48_RS02390at 518.379 kb on - strand, within HGI48_RS02390at 518.379 kb on - strand, within HGI48_RS02390at 518.379 kb on - strand, within HGI48_RS02390at 518.379 kb on - strandat 518.380 kb on + strand, within HGI48_RS02390at 518.471 kb on - strand, within HGI48_RS02390at 518.505 kb on + strand, within HGI48_RS02390at 518.505 kb on + strand, within HGI48_RS02390at 518.505 kb on + strandat 518.535 kb on + strand, within HGI48_RS02390at 518.635 kb on - strand, within HGI48_RS02390at 518.689 kb on + strand, within HGI48_RS02390at 518.689 kb on + strand, within HGI48_RS02390at 518.690 kb on - strand, within HGI48_RS02390at 518.690 kb on - strand, within HGI48_RS02390at 518.767 kb on - strandat 518.794 kb on - strandat 518.837 kb on + strandat 518.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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516,107 + HGI48_RS02380 0.42 +0.4
516,108 - HGI48_RS02380 0.42 -1.3
516,307 - HGI48_RS02380 0.56 +0.5
516,464 - HGI48_RS02380 0.67 +0.2
516,464 - HGI48_RS02380 0.67 -2.1
516,464 - +3.5
516,464 - HGI48_RS02380 0.67 -0.1
516,534 + HGI48_RS02380 0.72 +2.5
516,807 - +0.5
516,883 + +1.1
516,883 + +0.1
516,884 - -0.5
516,884 - +1.1
516,921 + +1.4
516,921 + +0.9
516,921 + -2.1
516,921 + -1.1
516,921 + -0.2
516,922 - +0.6
516,922 - -1.0
516,922 - -1.3
516,932 + -0.9
516,932 + -0.5
516,941 + +0.0
516,941 + -0.2
516,942 - +0.6
516,942 - -2.2
516,942 - -0.8
516,944 + -2.4
516,944 + +0.4
516,944 + +0.1
516,944 + -0.8
516,944 + +0.2
516,945 - -1.8
516,945 - +0.2
516,957 + -1.8
516,958 - +0.1
517,227 + HGI48_RS02385 0.24 -0.6
517,228 - HGI48_RS02385 0.24 -2.5
517,230 - HGI48_RS02385 0.24 -1.3
517,230 - HGI48_RS02385 0.24 -0.7
517,230 - HGI48_RS02385 0.24 -0.9
517,334 + HGI48_RS02385 0.34 +0.6
517,334 + HGI48_RS02385 0.34 +0.1
517,334 + HGI48_RS02385 0.34 -3.4
517,335 - HGI48_RS02385 0.35 -1.2
517,335 - HGI48_RS02385 0.35 +0.3
517,346 + HGI48_RS02385 0.36 -1.6
517,346 + HGI48_RS02385 0.36 +0.7
517,347 - HGI48_RS02385 0.36 +1.5
517,593 + HGI48_RS02385 0.61 -1.8
517,594 - HGI48_RS02385 0.61 -2.0
517,594 - HGI48_RS02385 0.61 -0.4
517,667 + HGI48_RS02385 0.69 -0.9
517,667 + HGI48_RS02385 0.69 -1.3
517,668 - HGI48_RS02385 0.69 -0.8
517,817 - HGI48_RS02385 0.84 +0.9
517,819 + HGI48_RS02385 0.84 -2.9
517,819 + HGI48_RS02385 0.84 -2.5
517,820 - HGI48_RS02385 0.84 +0.1
517,820 - HGI48_RS02385 0.84 -1.5
517,823 + HGI48_RS02385 0.84 +0.5
517,823 + HGI48_RS02385 0.84 +1.5
517,824 - HGI48_RS02385 0.85 -1.5
517,824 - HGI48_RS02385 0.85 -1.3
517,824 - HGI48_RS02385 0.85 -0.9
517,824 - HGI48_RS02385 0.85 -0.9
517,844 + HGI48_RS02385 0.87 -1.1
517,844 + HGI48_RS02385 0.87 -1.8
517,845 - HGI48_RS02385 0.87 +0.6
517,874 + HGI48_RS02385 0.90 -0.9
517,955 + -1.4
517,956 - +1.1
517,956 - +2.1
517,979 + -0.3
517,979 + -1.3
517,979 + -0.5
517,980 - +1.2
517,983 + -1.3
517,984 - +1.1
517,984 - +0.1
517,984 - -1.3
518,046 + +0.7
518,047 - -0.1
518,047 - +1.3
518,098 - +0.6
518,098 - -0.1
518,098 - -1.8
518,133 - +0.1
518,133 - +2.1
518,133 - +0.5
518,133 - +0.5
518,183 + HGI48_RS02390 0.12 +1.0
518,197 + HGI48_RS02390 0.14 -1.3
518,198 - HGI48_RS02390 0.14 +0.6
518,198 - HGI48_RS02390 0.14 +0.6
518,378 + HGI48_RS02390 0.40 +0.5
518,379 - HGI48_RS02390 0.40 -0.4
518,379 - HGI48_RS02390 0.40 +1.1
518,379 - HGI48_RS02390 0.40 +0.2
518,379 - +2.9
518,380 + HGI48_RS02390 0.41 +1.1
518,471 - HGI48_RS02390 0.54 +1.8
518,505 + HGI48_RS02390 0.59 -1.5
518,505 + HGI48_RS02390 0.59 +1.1
518,505 + +3.8
518,535 + HGI48_RS02390 0.63 +0.4
518,635 - HGI48_RS02390 0.78 +1.1
518,689 + HGI48_RS02390 0.86 -0.1
518,689 + HGI48_RS02390 0.86 +0.4
518,690 - HGI48_RS02390 0.86 -0.9
518,690 - HGI48_RS02390 0.86 +0.1
518,767 - +0.3
518,794 - -0.9
518,837 + -1.4
518,838 - +1.9

Or see this region's nucleotide sequence