Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01500

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS01490 and HGI48_RS01495 are separated by 11 nucleotidesHGI48_RS01495 and HGI48_RS01500 overlap by 8 nucleotidesHGI48_RS01500 and HGI48_RS01505 are separated by 133 nucleotidesHGI48_RS01505 and HGI48_RS01510 are separated by 53 nucleotides HGI48_RS01490: HGI48_RS01490 - outer membrane lipid asymmetry maintenance protein MlaD, at 328,495 to 329,109 _RS01490 HGI48_RS01495: HGI48_RS01495 - phospholipid-binding protein MlaC, at 329,121 to 329,774 _RS01495 HGI48_RS01500: HGI48_RS01500 - lipid asymmetry maintenance protein MlaB, at 329,767 to 330,069 _RS01500 HGI48_RS01505: HGI48_RS01505 - BolA family iron metabolism protein IbaG, at 330,203 to 330,457 _RS01505 HGI48_RS01510: HGI48_RS01510 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 330,511 to 331,773 _RS01510 Position (kb) 329 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 328.800 kb on + strand, within HGI48_RS01490at 328.825 kb on + strand, within HGI48_RS01490at 328.825 kb on + strand, within HGI48_RS01490at 328.826 kb on - strand, within HGI48_RS01490at 328.826 kb on - strandat 328.946 kb on + strand, within HGI48_RS01490at 328.946 kb on + strand, within HGI48_RS01490at 328.947 kb on - strandat 328.947 kb on - strand, within HGI48_RS01490at 328.949 kb on - strand, within HGI48_RS01490at 328.949 kb on - strand, within HGI48_RS01490at 328.949 kb on - strand, within HGI48_RS01490at 328.950 kb on + strand, within HGI48_RS01490at 328.950 kb on + strandat 328.950 kb on + strand, within HGI48_RS01490at 328.950 kb on + strand, within HGI48_RS01490at 328.950 kb on + strand, within HGI48_RS01490at 328.950 kb on + strandat 328.950 kb on + strandat 328.951 kb on - strand, within HGI48_RS01490at 328.951 kb on - strand, within HGI48_RS01490at 328.951 kb on - strand, within HGI48_RS01490at 328.951 kb on - strand, within HGI48_RS01490at 328.951 kb on - strand, within HGI48_RS01490at 328.951 kb on - strandat 328.951 kb on - strand, within HGI48_RS01490at 328.951 kb on - strand, within HGI48_RS01490at 328.968 kb on + strand, within HGI48_RS01490at 328.969 kb on - strand, within HGI48_RS01490at 328.969 kb on - strand, within HGI48_RS01490at 328.989 kb on + strand, within HGI48_RS01490at 328.989 kb on + strandat 328.989 kb on + strand, within HGI48_RS01490at 328.990 kb on - strand, within HGI48_RS01490at 328.992 kb on + strand, within HGI48_RS01490at 328.992 kb on + strand, within HGI48_RS01490at 328.992 kb on + strand, within HGI48_RS01490at 328.992 kb on + strand, within HGI48_RS01490at 328.993 kb on - strand, within HGI48_RS01490at 328.996 kb on - strand, within HGI48_RS01490at 328.996 kb on - strand, within HGI48_RS01490at 328.996 kb on - strand, within HGI48_RS01490at 328.996 kb on - strand, within HGI48_RS01490at 329.019 kb on + strand, within HGI48_RS01490at 329.020 kb on - strandat 329.020 kb on - strandat 329.134 kb on + strandat 329.218 kb on - strand, within HGI48_RS01495at 329.219 kb on + strand, within HGI48_RS01495at 329.220 kb on - strand, within HGI48_RS01495at 329.282 kb on + strand, within HGI48_RS01495at 329.283 kb on - strand, within HGI48_RS01495at 329.295 kb on - strand, within HGI48_RS01495at 329.334 kb on + strand, within HGI48_RS01495at 329.334 kb on + strand, within HGI48_RS01495at 329.334 kb on + strand, within HGI48_RS01495at 329.335 kb on - strand, within HGI48_RS01495at 329.344 kb on + strand, within HGI48_RS01495at 329.376 kb on + strandat 329.376 kb on + strand, within HGI48_RS01495at 329.377 kb on - strandat 329.379 kb on + strand, within HGI48_RS01495at 329.379 kb on + strand, within HGI48_RS01495at 329.379 kb on + strand, within HGI48_RS01495at 329.380 kb on - strand, within HGI48_RS01495at 329.381 kb on + strand, within HGI48_RS01495at 329.381 kb on + strand, within HGI48_RS01495at 329.381 kb on + strand, within HGI48_RS01495at 329.382 kb on - strand, within HGI48_RS01495at 329.382 kb on - strandat 329.413 kb on - strand, within HGI48_RS01495at 329.434 kb on - strand, within HGI48_RS01495at 329.469 kb on + strandat 329.469 kb on + strand, within HGI48_RS01495at 329.469 kb on + strand, within HGI48_RS01495at 329.469 kb on + strand, within HGI48_RS01495at 329.469 kb on + strand, within HGI48_RS01495at 329.470 kb on - strand, within HGI48_RS01495at 329.484 kb on + strand, within HGI48_RS01495at 329.543 kb on + strandat 329.543 kb on + strand, within HGI48_RS01495at 329.544 kb on - strand, within HGI48_RS01495at 329.544 kb on - strand, within HGI48_RS01495at 329.625 kb on + strand, within HGI48_RS01495at 329.625 kb on + strand, within HGI48_RS01495at 329.625 kb on + strandat 329.626 kb on - strand, within HGI48_RS01495at 329.626 kb on - strand, within HGI48_RS01495at 329.717 kb on + strandat 329.717 kb on + strandat 329.717 kb on + strandat 329.717 kb on + strandat 329.718 kb on - strandat 329.835 kb on + strand, within HGI48_RS01500at 329.881 kb on - strand, within HGI48_RS01500at 329.950 kb on + strand, within HGI48_RS01500at 330.026 kb on + strand, within HGI48_RS01500at 330.026 kb on + strand, within HGI48_RS01500at 330.027 kb on - strand, within HGI48_RS01500at 330.027 kb on - strand, within HGI48_RS01500at 330.027 kb on - strand, within HGI48_RS01500at 330.028 kb on + strand, within HGI48_RS01500at 330.028 kb on + strand, within HGI48_RS01500at 330.028 kb on + strand, within HGI48_RS01500at 330.028 kb on + strand, within HGI48_RS01500at 330.028 kb on + strand, within HGI48_RS01500at 330.029 kb on - strand, within HGI48_RS01500at 330.029 kb on - strand, within HGI48_RS01500at 330.029 kb on - strand, within HGI48_RS01500at 330.029 kb on - strand, within HGI48_RS01500at 330.030 kb on + strand, within HGI48_RS01500at 330.030 kb on + strand, within HGI48_RS01500at 330.030 kb on + strand, within HGI48_RS01500at 330.031 kb on - strand, within HGI48_RS01500at 330.031 kb on - strand, within HGI48_RS01500at 330.031 kb on - strand, within HGI48_RS01500at 330.031 kb on - strand, within HGI48_RS01500at 330.039 kb on + strandat 330.155 kb on + strandat 330.155 kb on + strandat 330.155 kb on + strandat 330.160 kb on + strandat 330.160 kb on + strandat 330.160 kb on + strandat 330.160 kb on + strandat 330.160 kb on + strandat 330.172 kb on + strandat 330.172 kb on + strandat 330.300 kb on + strand, within HGI48_RS01505at 330.300 kb on + strand, within HGI48_RS01505at 330.300 kb on + strand, within HGI48_RS01505at 330.368 kb on + strand, within HGI48_RS01505at 330.368 kb on + strandat 330.370 kb on + strandat 330.410 kb on + strandat 330.410 kb on + strand, within HGI48_RS01505at 330.412 kb on + strand, within HGI48_RS01505at 330.412 kb on + strand, within HGI48_RS01505at 330.412 kb on + strand, within HGI48_RS01505at 330.412 kb on + strand, within HGI48_RS01505at 330.412 kb on + strand, within HGI48_RS01505at 330.455 kb on + strandat 330.455 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
328,800 + HGI48_RS01490 0.50 +1.6
328,825 + HGI48_RS01490 0.54 -0.2
328,825 + HGI48_RS01490 0.54 -1.2
328,826 - HGI48_RS01490 0.54 -0.5
328,826 - -0.5
328,946 + HGI48_RS01490 0.73 -0.5
328,946 + HGI48_RS01490 0.73 -0.1
328,947 - +1.1
328,947 - HGI48_RS01490 0.73 +1.1
328,949 - HGI48_RS01490 0.74 +0.7
328,949 - HGI48_RS01490 0.74 +0.9
328,949 - HGI48_RS01490 0.74 +2.1
328,950 + HGI48_RS01490 0.74 +0.0
328,950 + +2.3
328,950 + HGI48_RS01490 0.74 +0.8
328,950 + HGI48_RS01490 0.74 -0.7
328,950 + HGI48_RS01490 0.74 -1.9
328,950 + -0.5
328,950 + +0.1
328,951 - HGI48_RS01490 0.74 +0.3
328,951 - HGI48_RS01490 0.74 -0.3
328,951 - HGI48_RS01490 0.74 -1.2
328,951 - HGI48_RS01490 0.74 +0.1
328,951 - HGI48_RS01490 0.74 +1.1
328,951 - +1.1
328,951 - HGI48_RS01490 0.74 +0.3
328,951 - HGI48_RS01490 0.74 -0.1
328,968 + HGI48_RS01490 0.77 -0.7
328,969 - HGI48_RS01490 0.77 +0.6
328,969 - HGI48_RS01490 0.77 -0.9
328,989 + HGI48_RS01490 0.80 +0.8
328,989 + +1.1
328,989 + HGI48_RS01490 0.80 -0.1
328,990 - HGI48_RS01490 0.80 -0.5
328,992 + HGI48_RS01490 0.81 -0.4
328,992 + HGI48_RS01490 0.81 +0.0
328,992 + HGI48_RS01490 0.81 -0.9
328,992 + HGI48_RS01490 0.81 -0.7
328,993 - HGI48_RS01490 0.81 -1.5
328,996 - HGI48_RS01490 0.81 +1.9
328,996 - HGI48_RS01490 0.81 +0.6
328,996 - HGI48_RS01490 0.81 -0.3
328,996 - HGI48_RS01490 0.81 +0.1
329,019 + HGI48_RS01490 0.85 +0.9
329,020 - -0.5
329,020 - -0.5
329,134 + -0.5
329,218 - HGI48_RS01495 0.15 +0.4
329,219 + HGI48_RS01495 0.15 -0.9
329,220 - HGI48_RS01495 0.15 +0.1
329,282 + HGI48_RS01495 0.25 +0.7
329,283 - HGI48_RS01495 0.25 -1.7
329,295 - HGI48_RS01495 0.27 -0.9
329,334 + HGI48_RS01495 0.33 +0.1
329,334 + HGI48_RS01495 0.33 -0.9
329,334 + HGI48_RS01495 0.33 -1.7
329,335 - HGI48_RS01495 0.33 -1.9
329,344 + HGI48_RS01495 0.34 +0.1
329,376 + -0.5
329,376 + HGI48_RS01495 0.39 +0.7
329,377 - +2.1
329,379 + HGI48_RS01495 0.39 -2.1
329,379 + HGI48_RS01495 0.39 +2.3
329,379 + HGI48_RS01495 0.39 +1.1
329,380 - HGI48_RS01495 0.40 +0.1
329,381 + HGI48_RS01495 0.40 -1.5
329,381 + HGI48_RS01495 0.40 -1.5
329,381 + HGI48_RS01495 0.40 -1.1
329,382 - HGI48_RS01495 0.40 -1.5
329,382 - +0.5
329,413 - HGI48_RS01495 0.45 -1.5
329,434 - HGI48_RS01495 0.48 +1.0
329,469 + -0.5
329,469 + HGI48_RS01495 0.53 -0.2
329,469 + HGI48_RS01495 0.53 +0.9
329,469 + HGI48_RS01495 0.53 +1.2
329,469 + HGI48_RS01495 0.53 +1.8
329,470 - HGI48_RS01495 0.53 +0.8
329,484 + HGI48_RS01495 0.56 -1.2
329,543 + +1.1
329,543 + HGI48_RS01495 0.65 -1.5
329,544 - HGI48_RS01495 0.65 +0.7
329,544 - HGI48_RS01495 0.65 -0.5
329,625 + HGI48_RS01495 0.77 +0.1
329,625 + HGI48_RS01495 0.77 -1.0
329,625 + -0.5
329,626 - HGI48_RS01495 0.77 -2.8
329,626 - HGI48_RS01495 0.77 -0.0
329,717 + +0.8
329,717 + +1.7
329,717 + -1.7
329,717 + -1.7
329,718 - -0.9
329,835 + HGI48_RS01500 0.22 -0.3
329,881 - HGI48_RS01500 0.38 -1.7
329,950 + HGI48_RS01500 0.60 +0.7
330,026 + HGI48_RS01500 0.85 -1.7
330,026 + HGI48_RS01500 0.85 -1.5
330,027 - HGI48_RS01500 0.86 +0.7
330,027 - HGI48_RS01500 0.86 +0.7
330,027 - HGI48_RS01500 0.86 -1.2
330,028 + HGI48_RS01500 0.86 -1.9
330,028 + HGI48_RS01500 0.86 -1.3
330,028 + HGI48_RS01500 0.86 -0.1
330,028 + HGI48_RS01500 0.86 -2.2
330,028 + HGI48_RS01500 0.86 +2.8
330,029 - HGI48_RS01500 0.86 -0.9
330,029 - HGI48_RS01500 0.86 -0.1
330,029 - HGI48_RS01500 0.86 +0.1
330,029 - HGI48_RS01500 0.86 -1.2
330,030 + HGI48_RS01500 0.87 -1.5
330,030 + HGI48_RS01500 0.87 -1.5
330,030 + HGI48_RS01500 0.87 -0.9
330,031 - HGI48_RS01500 0.87 -1.5
330,031 - HGI48_RS01500 0.87 -0.8
330,031 - HGI48_RS01500 0.87 -0.0
330,031 - HGI48_RS01500 0.87 +0.8
330,039 + -2.4
330,155 + +0.3
330,155 + -0.9
330,155 + -1.7
330,160 + -0.1
330,160 + -1.2
330,160 + -1.4
330,160 + +1.7
330,160 + -1.0
330,172 + +0.8
330,172 + +0.1
330,300 + HGI48_RS01505 0.38 -0.8
330,300 + HGI48_RS01505 0.38 +0.8
330,300 + HGI48_RS01505 0.38 -1.5
330,368 + HGI48_RS01505 0.65 -0.6
330,368 + -0.5
330,370 + -0.5
330,410 + +1.1
330,410 + HGI48_RS01505 0.81 +0.3
330,412 + HGI48_RS01505 0.82 -1.2
330,412 + HGI48_RS01505 0.82 -1.3
330,412 + HGI48_RS01505 0.82 -0.1
330,412 + HGI48_RS01505 0.82 -1.5
330,412 + HGI48_RS01505 0.82 -0.9
330,455 + +2.1
330,455 + -1.6

Or see this region's nucleotide sequence