Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00840 and HGI48_RS00845 are separated by 6 nucleotides HGI48_RS00845 and HGI48_RS00850 are separated by 233 nucleotides HGI48_RS00850 and HGI48_RS00855 are separated by 288 nucleotides
HGI48_RS00840: HGI48_RS00840 - SocA family protein, at 191,607 to 192,131
_RS00840
HGI48_RS00845: HGI48_RS00845 - hypothetical protein, at 192,138 to 192,710
_RS00845
HGI48_RS00850: HGI48_RS00850 - phosphoenolpyruvate carboxylase, at 192,944 to 195,583
_RS00850
HGI48_RS00855: HGI48_RS00855 - PTS transporter subunit EIIC, at 195,872 to 197,251
_RS00855
Position (kb) 192
193
194
195
196 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 191.966 kb on - strand, within HGI48_RS00840 at 192.039 kb on - strand, within HGI48_RS00840 at 192.039 kb on - strand, within HGI48_RS00840 at 192.182 kb on - strand at 192.213 kb on - strand, within HGI48_RS00845 at 192.213 kb on - strand, within HGI48_RS00845 at 192.233 kb on + strand, within HGI48_RS00845 at 192.271 kb on - strand, within HGI48_RS00845 at 192.286 kb on + strand, within HGI48_RS00845 at 192.287 kb on - strand, within HGI48_RS00845 at 192.300 kb on - strand, within HGI48_RS00845 at 192.305 kb on + strand, within HGI48_RS00845 at 192.311 kb on - strand, within HGI48_RS00845 at 192.331 kb on + strand, within HGI48_RS00845 at 192.331 kb on + strand, within HGI48_RS00845 at 192.331 kb on + strand, within HGI48_RS00845 at 192.405 kb on - strand at 192.418 kb on - strand at 192.418 kb on - strand, within HGI48_RS00845 at 192.418 kb on - strand, within HGI48_RS00845 at 192.418 kb on - strand, within HGI48_RS00845 at 192.418 kb on - strand, within HGI48_RS00845 at 192.418 kb on - strand, within HGI48_RS00845 at 192.433 kb on - strand, within HGI48_RS00845 at 192.495 kb on + strand, within HGI48_RS00845 at 192.506 kb on + strand, within HGI48_RS00845 at 192.514 kb on + strand, within HGI48_RS00845 at 192.530 kb on + strand, within HGI48_RS00845 at 192.572 kb on + strand, within HGI48_RS00845 at 192.616 kb on + strand, within HGI48_RS00845 at 192.713 kb on + strand at 192.729 kb on + strand at 192.729 kb on + strand at 192.738 kb on + strand at 192.739 kb on - strand at 192.861 kb on + strand at 192.862 kb on - strand at 192.862 kb on - strand at 192.863 kb on + strand at 192.863 kb on + strand at 192.863 kb on + strand at 192.864 kb on - strand at 192.864 kb on - strand at 192.864 kb on - strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.866 kb on - strand at 192.883 kb on - strand at 192.892 kb on + strand at 192.925 kb on - strand at 192.926 kb on + strand at 192.926 kb on + strand at 192.926 kb on + strand at 192.927 kb on - strand at 192.927 kb on - strand at 192.927 kb on - strand at 193.004 kb on + strand at 193.005 kb on - strand at 193.058 kb on + strand at 193.059 kb on - strand at 193.066 kb on + strand at 193.066 kb on + strand at 193.066 kb on + strand at 193.066 kb on + strand at 193.067 kb on - strand at 193.067 kb on - strand at 193.067 kb on - strand at 193.081 kb on - strand at 193.239 kb on + strand, within HGI48_RS00850 at 193.240 kb on - strand, within HGI48_RS00850 at 193.240 kb on - strand, within HGI48_RS00850 at 193.242 kb on + strand at 193.242 kb on + strand, within HGI48_RS00850 at 193.242 kb on + strand, within HGI48_RS00850 at 193.242 kb on + strand, within HGI48_RS00850 at 193.243 kb on - strand, within HGI48_RS00850 at 193.274 kb on + strand, within HGI48_RS00850 at 193.274 kb on + strand, within HGI48_RS00850 at 193.288 kb on + strand, within HGI48_RS00850 at 193.289 kb on - strand, within HGI48_RS00850 at 193.289 kb on - strand, within HGI48_RS00850 at 193.289 kb on - strand, within HGI48_RS00850 at 193.289 kb on - strand, within HGI48_RS00850 at 193.543 kb on - strand, within HGI48_RS00850 at 193.573 kb on - strand, within HGI48_RS00850 at 193.581 kb on + strand, within HGI48_RS00850 at 193.582 kb on - strand, within HGI48_RS00850 at 193.582 kb on - strand, within HGI48_RS00850 at 193.683 kb on + strand, within HGI48_RS00850 at 193.683 kb on + strand, within HGI48_RS00850 at 193.683 kb on + strand at 193.683 kb on + strand, within HGI48_RS00850 at 193.684 kb on - strand, within HGI48_RS00850 at 193.684 kb on - strand, within HGI48_RS00850 at 193.684 kb on - strand, within HGI48_RS00850 at 193.684 kb on - strand, within HGI48_RS00850 at 193.684 kb on - strand at 193.684 kb on - strand, within HGI48_RS00850 at 193.872 kb on + strand, within HGI48_RS00850 at 193.912 kb on - strand, within HGI48_RS00850 at 194.164 kb on + strand, within HGI48_RS00850 at 194.164 kb on + strand, within HGI48_RS00850 at 194.165 kb on - strand, within HGI48_RS00850 at 194.165 kb on - strand, within HGI48_RS00850 at 194.165 kb on - strand, within HGI48_RS00850 at 194.165 kb on - strand, within HGI48_RS00850 at 194.165 kb on - strand, within HGI48_RS00850 at 194.169 kb on + strand, within HGI48_RS00850 at 194.169 kb on + strand, within HGI48_RS00850 at 194.169 kb on + strand, within HGI48_RS00850 at 194.170 kb on - strand, within HGI48_RS00850 at 194.281 kb on + strand, within HGI48_RS00850 at 194.281 kb on + strand at 194.282 kb on - strand, within HGI48_RS00850 at 194.331 kb on + strand, within HGI48_RS00850 at 194.332 kb on - strand, within HGI48_RS00850 at 194.399 kb on + strand, within HGI48_RS00850 at 194.399 kb on + strand, within HGI48_RS00850 at 194.399 kb on + strand, within HGI48_RS00850 at 194.400 kb on - strand at 194.400 kb on - strand, within HGI48_RS00850 at 194.400 kb on - strand, within HGI48_RS00850 at 194.400 kb on - strand, within HGI48_RS00850 at 194.400 kb on - strand, within HGI48_RS00850 at 194.400 kb on - strand, within HGI48_RS00850 at 194.528 kb on + strand, within HGI48_RS00850 at 194.528 kb on + strand, within HGI48_RS00850 at 194.599 kb on - strand, within HGI48_RS00850 at 194.599 kb on - strand at 194.599 kb on - strand, within HGI48_RS00850 at 194.661 kb on - strand, within HGI48_RS00850 at 194.774 kb on + strand, within HGI48_RS00850 at 194.795 kb on - strand, within HGI48_RS00850 at 195.023 kb on - strand, within HGI48_RS00850 at 195.041 kb on + strand at 195.041 kb on + strand, within HGI48_RS00850 at 195.041 kb on + strand, within HGI48_RS00850 at 195.041 kb on + strand at 195.042 kb on - strand at 195.042 kb on - strand, within HGI48_RS00850 at 195.042 kb on - strand, within HGI48_RS00850 at 195.078 kb on + strand at 195.118 kb on + strand, within HGI48_RS00850 at 195.118 kb on + strand, within HGI48_RS00850 at 195.118 kb on + strand, within HGI48_RS00850 at 195.118 kb on + strand, within HGI48_RS00850 at 195.119 kb on - strand, within HGI48_RS00850 at 195.119 kb on - strand, within HGI48_RS00850 at 195.119 kb on - strand, within HGI48_RS00850 at 195.263 kb on + strand, within HGI48_RS00850 at 195.263 kb on + strand, within HGI48_RS00850 at 195.313 kb on + strand, within HGI48_RS00850 at 195.313 kb on + strand, within HGI48_RS00850 at 195.313 kb on + strand, within HGI48_RS00850 at 195.313 kb on + strand at 195.313 kb on + strand, within HGI48_RS00850 at 195.313 kb on + strand, within HGI48_RS00850 at 195.314 kb on - strand, within HGI48_RS00850 at 195.570 kb on + strand at 195.571 kb on - strand at 195.583 kb on + strand at 195.584 kb on - strand at 195.634 kb on + strand at 195.652 kb on + strand at 195.652 kb on + strand at 195.652 kb on + strand at 195.693 kb on + strand at 195.693 kb on + strand at 195.693 kb on + strand at 195.694 kb on - strand at 195.694 kb on - strand at 195.708 kb on + strand at 195.709 kb on - strand at 195.763 kb on + strand at 195.764 kb on - strand at 195.764 kb on - strand at 195.765 kb on + strand at 195.765 kb on + strand at 195.776 kb on + strand at 195.776 kb on + strand at 195.777 kb on - strand at 195.779 kb on + strand at 195.779 kb on + strand at 195.900 kb on + strand at 195.900 kb on + strand at 195.900 kb on + strand at 195.900 kb on + strand at 195.900 kb on + strand at 195.900 kb on + strand at 195.901 kb on - strand at 195.901 kb on - strand at 195.936 kb on - strand at 195.936 kb on - strand at 195.951 kb on + strand at 195.960 kb on + strand at 195.960 kb on + strand at 195.961 kb on - strand at 195.972 kb on + strand at 195.972 kb on + strand at 195.973 kb on - strand at 195.973 kb on - strand at 195.986 kb on - strand at 195.989 kb on + strand at 195.989 kb on + strand at 195.989 kb on + strand at 195.989 kb on + strand at 195.990 kb on - strand at 195.990 kb on - strand at 196.003 kb on + strand at 196.003 kb on + strand at 196.003 kb on + strand at 196.005 kb on + strand at 196.006 kb on - strand at 196.006 kb on - strand at 196.089 kb on + strand, within HGI48_RS00855 at 196.090 kb on - strand, within HGI48_RS00855 at 196.100 kb on + strand, within HGI48_RS00855 at 196.101 kb on - strand, within HGI48_RS00855 at 196.169 kb on - strand, within HGI48_RS00855 at 196.194 kb on + strand, within HGI48_RS00855 at 196.195 kb on - strand, within HGI48_RS00855 at 196.234 kb on + strand at 196.235 kb on - strand, within HGI48_RS00855 at 196.235 kb on - strand, within HGI48_RS00855 at 196.235 kb on - strand, within HGI48_RS00855 at 196.243 kb on + strand, within HGI48_RS00855 at 196.243 kb on + strand, within HGI48_RS00855 at 196.244 kb on - strand, within HGI48_RS00855 at 196.244 kb on - strand, within HGI48_RS00855 at 196.244 kb on - strand, within HGI48_RS00855 at 196.313 kb on - strand, within HGI48_RS00855 at 196.454 kb on + strand, within HGI48_RS00855 at 196.454 kb on + strand at 196.455 kb on - strand, within HGI48_RS00855 at 196.455 kb on - strand, within HGI48_RS00855 at 196.513 kb on + strand, within HGI48_RS00855 at 196.524 kb on - strand, within HGI48_RS00855 at 196.539 kb on + strand, within HGI48_RS00855 at 196.539 kb on + strand, within HGI48_RS00855 at 196.539 kb on + strand, within HGI48_RS00855 at 196.539 kb on + strand, within HGI48_RS00855 at 196.540 kb on - strand, within HGI48_RS00855 at 196.540 kb on - strand at 196.540 kb on - strand, within HGI48_RS00855 at 196.540 kb on - strand, within HGI48_RS00855 at 196.540 kb on - strand, within HGI48_RS00855 at 196.540 kb on - strand, within HGI48_RS00855 at 196.540 kb on - strand, within HGI48_RS00855 at 196.540 kb on - strand, within HGI48_RS00855 at 196.540 kb on - strand, within HGI48_RS00855 at 196.540 kb on - strand, within HGI48_RS00855 at 196.540 kb on - strand, within HGI48_RS00855 at 196.540 kb on - strand, within HGI48_RS00855 at 196.545 kb on - strand at 196.571 kb on + strand, within HGI48_RS00855 at 196.573 kb on + strand, within HGI48_RS00855 at 196.573 kb on + strand, within HGI48_RS00855 at 196.573 kb on + strand, within HGI48_RS00855
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 191,966 - HGI48_RS00840 0.68 -0.3 192,039 - HGI48_RS00840 0.82 +0.6 192,039 - HGI48_RS00840 0.82 +1.1 192,182 - +0.6 192,213 - HGI48_RS00845 0.13 -1.7 192,213 - HGI48_RS00845 0.13 -0.5 192,233 + HGI48_RS00845 0.17 -2.2 192,271 - HGI48_RS00845 0.23 +1.9 192,286 + HGI48_RS00845 0.26 +0.1 192,287 - HGI48_RS00845 0.26 +1.9 192,300 - HGI48_RS00845 0.28 +0.1 192,305 + HGI48_RS00845 0.29 -0.1 192,311 - HGI48_RS00845 0.30 +0.7 192,331 + HGI48_RS00845 0.34 +1.3 192,331 + HGI48_RS00845 0.34 +0.5 192,331 + HGI48_RS00845 0.34 -1.2 192,405 - -0.5 192,418 - +1.1 192,418 - HGI48_RS00845 0.49 +0.5 192,418 - HGI48_RS00845 0.49 +0.2 192,418 - HGI48_RS00845 0.49 -1.7 192,418 - HGI48_RS00845 0.49 -0.7 192,418 - HGI48_RS00845 0.49 -2.7 192,433 - HGI48_RS00845 0.51 +0.1 192,495 + HGI48_RS00845 0.62 -0.9 192,506 + HGI48_RS00845 0.64 +0.8 192,514 + HGI48_RS00845 0.66 -2.2 192,530 + HGI48_RS00845 0.68 -0.9 192,572 + HGI48_RS00845 0.76 -2.0 192,616 + HGI48_RS00845 0.83 -0.1 192,713 + -0.5 192,729 + +4.8 192,729 + +3.0 192,738 + +1.2 192,739 - +0.8 192,861 + +1.7 192,862 - +1.1 192,862 - -0.5 192,863 + +0.0 192,863 + -0.7 192,863 + -0.5 192,864 - -0.1 192,864 - -3.1 192,864 - -1.3 192,865 + -1.0 192,865 + +0.4 192,865 + -0.7 192,865 + +2.9 192,866 - +0.5 192,883 - +2.7 192,892 + -2.3 192,925 - +0.3 192,926 + -0.7 192,926 + -0.0 192,926 + +0.6 192,927 - +0.9 192,927 - -0.7 192,927 - -0.7 193,004 + -1.5 193,005 - -1.0 193,058 + +0.4 193,059 - -0.7 193,066 + -1.5 193,066 + -1.7 193,066 + -1.2 193,066 + -1.9 193,067 - -0.5 193,067 - -0.5 193,067 - -2.0 193,081 - -3.6 193,239 + HGI48_RS00850 0.11 -1.5 193,240 - HGI48_RS00850 0.11 -1.7 193,240 - HGI48_RS00850 0.11 -2.2 193,242 + +0.1 193,242 + HGI48_RS00850 0.11 -0.5 193,242 + HGI48_RS00850 0.11 -2.3 193,242 + HGI48_RS00850 0.11 -0.5 193,243 - HGI48_RS00850 0.11 +0.3 193,274 + HGI48_RS00850 0.12 -1.5 193,274 + HGI48_RS00850 0.12 -1.5 193,288 + HGI48_RS00850 0.13 -1.5 193,289 - HGI48_RS00850 0.13 -0.9 193,289 - HGI48_RS00850 0.13 +0.3 193,289 - HGI48_RS00850 0.13 -1.7 193,289 - HGI48_RS00850 0.13 -1.4 193,543 - HGI48_RS00850 0.23 -2.0 193,573 - HGI48_RS00850 0.24 -1.7 193,581 + HGI48_RS00850 0.24 -2.7 193,582 - HGI48_RS00850 0.24 -1.9 193,582 - HGI48_RS00850 0.24 -1.3 193,683 + HGI48_RS00850 0.28 -0.3 193,683 + HGI48_RS00850 0.28 -1.5 193,683 + -0.5 193,683 + HGI48_RS00850 0.28 -2.6 193,684 - HGI48_RS00850 0.28 -2.4 193,684 - HGI48_RS00850 0.28 -2.1 193,684 - HGI48_RS00850 0.28 -0.9 193,684 - HGI48_RS00850 0.28 +1.1 193,684 - +2.4 193,684 - HGI48_RS00850 0.28 -1.5 193,872 + HGI48_RS00850 0.35 -0.9 193,912 - HGI48_RS00850 0.37 -3.0 194,164 + HGI48_RS00850 0.46 -2.6 194,164 + HGI48_RS00850 0.46 +0.8 194,165 - HGI48_RS00850 0.46 -0.9 194,165 - HGI48_RS00850 0.46 -0.9 194,165 - HGI48_RS00850 0.46 +0.1 194,165 - HGI48_RS00850 0.46 -3.6 194,165 - HGI48_RS00850 0.46 -1.9 194,169 + HGI48_RS00850 0.46 -4.6 194,169 + HGI48_RS00850 0.46 -3.3 194,169 + HGI48_RS00850 0.46 +0.8 194,170 - HGI48_RS00850 0.46 -1.5 194,281 + HGI48_RS00850 0.51 -2.5 194,281 + -0.5 194,282 - HGI48_RS00850 0.51 +1.1 194,331 + HGI48_RS00850 0.53 -1.7 194,332 - HGI48_RS00850 0.53 -3.5 194,399 + HGI48_RS00850 0.55 +2.2 194,399 + HGI48_RS00850 0.55 -2.9 194,399 + HGI48_RS00850 0.55 -2.3 194,400 - +2.3 194,400 - HGI48_RS00850 0.55 +0.4 194,400 - HGI48_RS00850 0.55 -3.0 194,400 - HGI48_RS00850 0.55 -2.9 194,400 - HGI48_RS00850 0.55 +0.7 194,400 - HGI48_RS00850 0.55 -0.5 194,528 + HGI48_RS00850 0.60 -0.9 194,528 + HGI48_RS00850 0.60 -0.3 194,599 - HGI48_RS00850 0.63 -2.2 194,599 - +0.1 194,599 - HGI48_RS00850 0.63 -3.2 194,661 - HGI48_RS00850 0.65 -2.6 194,774 + HGI48_RS00850 0.69 -1.8 194,795 - HGI48_RS00850 0.70 -2.2 195,023 - HGI48_RS00850 0.79 -4.2 195,041 + -0.5 195,041 + HGI48_RS00850 0.79 -1.7 195,041 + HGI48_RS00850 0.79 -2.7 195,041 + +0.1 195,042 - +1.1 195,042 - HGI48_RS00850 0.79 -1.9 195,042 - HGI48_RS00850 0.79 -3.6 195,078 + -0.5 195,118 + HGI48_RS00850 0.82 -0.9 195,118 + HGI48_RS00850 0.82 -0.9 195,118 + HGI48_RS00850 0.82 -1.7 195,118 + HGI48_RS00850 0.82 -1.5 195,119 - HGI48_RS00850 0.82 -2.0 195,119 - HGI48_RS00850 0.82 -0.9 195,119 - HGI48_RS00850 0.82 -1.3 195,263 + HGI48_RS00850 0.88 -0.9 195,263 + HGI48_RS00850 0.88 -1.6 195,313 + HGI48_RS00850 0.90 -1.9 195,313 + HGI48_RS00850 0.90 +1.9 195,313 + HGI48_RS00850 0.90 -1.2 195,313 + +0.1 195,313 + HGI48_RS00850 0.90 +0.9 195,313 + HGI48_RS00850 0.90 -1.7 195,314 - HGI48_RS00850 0.90 -2.5 195,570 + +0.5 195,571 - -1.2 195,583 + -2.8 195,584 - +1.9 195,634 + -2.0 195,652 + +0.2 195,652 + -1.4 195,652 + -1.5 195,693 + -1.7 195,693 + +0.6 195,693 + -0.7 195,694 - +0.5 195,694 - +2.2 195,708 + +0.4 195,709 - -2.0 195,763 + +1.3 195,764 - -0.4 195,764 - +0.1 195,765 + +2.9 195,765 + -0.7 195,776 + +1.8 195,776 + -2.5 195,777 - +2.1 195,779 + -0.0 195,779 + -0.2 195,900 + -0.3 195,900 + -0.5 195,900 + -1.1 195,900 + -1.5 195,900 + -1.7 195,900 + -0.5 195,901 - +1.2 195,901 - +0.1 195,936 - -0.9 195,936 - -0.2 195,951 + +0.1 195,960 + -0.5 195,960 + -1.7 195,961 - -1.5 195,972 + +1.6 195,972 + -0.5 195,973 - -0.0 195,973 - -1.7 195,986 - -1.2 195,989 + +1.1 195,989 + -0.1 195,989 + +0.4 195,989 + -0.6 195,990 - +0.8 195,990 - +0.6 196,003 + -0.9 196,003 + -0.1 196,003 + +1.0 196,005 + +1.6 196,006 - +1.3 196,006 - -1.9 196,089 + HGI48_RS00855 0.16 +0.1 196,090 - HGI48_RS00855 0.16 -2.2 196,100 + HGI48_RS00855 0.17 -1.1 196,101 - HGI48_RS00855 0.17 -1.2 196,169 - HGI48_RS00855 0.22 -1.5 196,194 + HGI48_RS00855 0.23 +0.3 196,195 - HGI48_RS00855 0.23 -0.6 196,234 + +2.4 196,235 - HGI48_RS00855 0.26 +0.7 196,235 - HGI48_RS00855 0.26 -0.4 196,235 - HGI48_RS00855 0.26 -1.2 196,243 + HGI48_RS00855 0.27 +0.1 196,243 + HGI48_RS00855 0.27 -1.2 196,244 - HGI48_RS00855 0.27 -0.7 196,244 - HGI48_RS00855 0.27 +0.4 196,244 - HGI48_RS00855 0.27 +0.1 196,313 - HGI48_RS00855 0.32 -0.6 196,454 + HGI48_RS00855 0.42 +0.4 196,454 + +1.5 196,455 - HGI48_RS00855 0.42 -0.3 196,455 - HGI48_RS00855 0.42 +1.4 196,513 + HGI48_RS00855 0.46 +0.4 196,524 - HGI48_RS00855 0.47 +0.4 196,539 + HGI48_RS00855 0.48 +1.8 196,539 + HGI48_RS00855 0.48 -2.2 196,539 + HGI48_RS00855 0.48 -0.2 196,539 + HGI48_RS00855 0.48 -1.7 196,540 - HGI48_RS00855 0.48 -0.1 196,540 - -0.5 196,540 - HGI48_RS00855 0.48 +0.3 196,540 - HGI48_RS00855 0.48 +0.8 196,540 - HGI48_RS00855 0.48 -0.8 196,540 - HGI48_RS00855 0.48 -0.9 196,540 - HGI48_RS00855 0.48 +1.3 196,540 - HGI48_RS00855 0.48 +1.4 196,540 - HGI48_RS00855 0.48 -0.7 196,540 - HGI48_RS00855 0.48 -1.5 196,540 - HGI48_RS00855 0.48 -0.2 196,540 - HGI48_RS00855 0.48 -1.5 196,545 - +1.5 196,571 + HGI48_RS00855 0.51 +0.1 196,573 + HGI48_RS00855 0.51 +0.7 196,573 + HGI48_RS00855 0.51 +0.8 196,573 + HGI48_RS00855 0.51 -0.9
Or see this region's nucleotide sequence