Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20830

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,648,629	+		HGI48_RS20825	0.26	+0.1
4,648,629	+		HGI48_RS20825	0.26	-1.8
4,648,629	+				+1.8
4,648,630	-		HGI48_RS20825	0.26	-1.3
4,648,655	-		HGI48_RS20825	0.28	-0.7
4,648,711	+		HGI48_RS20825	0.34	-0.9
4,648,711	+		HGI48_RS20825	0.34	+2.0
4,648,723	-		HGI48_RS20825	0.35	+0.2
4,648,727	+		HGI48_RS20825	0.35	+0.5
4,648,727	+		HGI48_RS20825	0.35	+0.2
4,648,727	+		HGI48_RS20825	0.35	-1.0
4,648,728	-		HGI48_RS20825	0.35	+0.1
4,648,728	-		HGI48_RS20825	0.35	-0.3
4,648,728	-				+0.4
4,648,730	+		HGI48_RS20825	0.35	+0.3
4,648,730	+		HGI48_RS20825	0.35	+1.9
4,648,797	+		HGI48_RS20825	0.42	-2.7
4,648,797	+		HGI48_RS20825	0.42	+0.3
4,648,798	-		HGI48_RS20825	0.42	-1.3
4,648,798	-		HGI48_RS20825	0.42	-1.0
4,648,798	-		HGI48_RS20825	0.42	+0.8
4,648,798	-		HGI48_RS20825	0.42	-1.0
4,648,798	-		HGI48_RS20825	0.42	+1.0
4,648,798	-		HGI48_RS20825	0.42	+0.0
4,648,854	+		HGI48_RS20825	0.48	-1.0
4,648,854	+				+0.4
4,648,878	-		HGI48_RS20825	0.50	+0.5
4,648,880	+		HGI48_RS20825	0.50	+0.6
4,648,880	+		HGI48_RS20825	0.50	-0.6
4,648,881	-		HGI48_RS20825	0.50	+0.3
4,648,893	+		HGI48_RS20825	0.51	-0.2
4,648,894	-		HGI48_RS20825	0.51	-0.2
4,648,954	-		HGI48_RS20825	0.57	-0.3
4,648,968	-		HGI48_RS20825	0.59	+0.0
4,648,968	-		HGI48_RS20825	0.59	+0.3
4,648,999	+		HGI48_RS20825	0.62	-0.4
4,648,999	+		HGI48_RS20825	0.62	+0.0
4,648,999	+		HGI48_RS20825	0.62	+1.6
4,649,000	-		HGI48_RS20825	0.62	+0.5
4,649,000	-		HGI48_RS20825	0.62	+0.3
4,649,000	-				+0.4
4,649,034	+		HGI48_RS20825	0.65	+0.3
4,649,034	+		HGI48_RS20825	0.65	-1.3
4,649,034	+		HGI48_RS20825	0.65	-0.3
4,649,034	+		HGI48_RS20825	0.65	+1.0
4,649,035	-		HGI48_RS20825	0.65	+1.3
4,649,035	-		HGI48_RS20825	0.65	-2.0
4,649,035	-		HGI48_RS20825	0.65	-1.6
4,649,035	-				-0.6
4,649,036	+		HGI48_RS20825	0.65	-1.1
4,649,036	+		HGI48_RS20825	0.65	+0.6
4,649,037	-		HGI48_RS20825	0.65	+0.0
4,649,050	+		HGI48_RS20825	0.67	-0.1
4,649,050	+		HGI48_RS20825	0.67	+1.7
4,649,050	+		HGI48_RS20825	0.67	+1.6
4,649,051	-		HGI48_RS20825	0.67	+1.8
4,649,051	-		HGI48_RS20825	0.67	-1.8
4,649,070	-		HGI48_RS20825	0.69	+0.0
4,649,070	-		HGI48_RS20825	0.69	-0.5
4,649,082	+		HGI48_RS20825	0.70	+1.1
4,649,082	+		HGI48_RS20825	0.70	+0.1
4,649,083	-		HGI48_RS20825	0.70	-0.8
4,649,083	-		HGI48_RS20825	0.70	-0.4
4,649,083	-		HGI48_RS20825	0.70	+0.4
4,649,112	-		HGI48_RS20825	0.73	+0.3
4,649,112	-		HGI48_RS20825	0.73	-0.2
4,649,118	-		HGI48_RS20825	0.73	-0.8
4,649,118	-		HGI48_RS20825	0.73	-1.4
4,649,126	+				+2.3
4,649,126	+		HGI48_RS20825	0.74	+0.0
4,649,158	+		HGI48_RS20825	0.77	+0.5
4,649,213	-		HGI48_RS20825	0.83	-0.1
4,649,237	-		HGI48_RS20825	0.85	+1.8
4,649,237	-		HGI48_RS20825	0.85	+0.0
4,649,252	+		HGI48_RS20825	0.86	-0.0
4,649,253	-		HGI48_RS20825	0.87	+1.2
4,649,324	-				-1.3
4,649,351	+				-1.0
4,649,351	+				+1.0
4,649,351	+				-2.3
4,649,353	+				+1.8
4,649,353	+				+1.0
4,649,353	+				-0.6
4,649,353	+				+0.2
4,649,353	+				+0.4
4,649,353	+				-0.1
4,649,353	+				+1.3
4,649,353	+				+0.3
4,649,353	+				+1.0
4,649,354	-				-1.1
4,649,354	-				+0.0
4,649,354	-				-1.1
4,649,354	-				-0.3
4,649,354	-				+0.0
4,649,354	-				-0.5
4,649,354	-				-0.2
4,649,354	-				+0.5
4,649,354	-				-2.1
4,649,372	-				+1.6
4,649,375	+				-1.1
4,649,457	+				+2.3
4,649,490	+				+0.2
4,649,490	+				-0.3
4,649,490	+				-1.1
4,649,491	-				-1.9
4,649,491	-				+0.2
4,649,491	-				+0.2
4,649,491	-				+0.7
4,649,541	-				+0.2
4,649,551	+				-0.8
4,649,583	+				-1.1
4,649,618	+				-0.4
4,649,619	-				+2.8
4,649,619	-				-1.3
4,649,622	+				+1.0
4,649,622	+				+1.0
4,649,622	+				-0.6
4,649,622	+				+0.2
4,649,622	+				-0.1
4,649,622	+				-0.3
4,649,623	-				+0.8
4,649,623	-				-0.6
4,649,623	-				+1.2
4,649,623	-				-0.1
4,649,623	-				+0.8
4,649,623	-				-2.0
4,649,623	-				+1.6
4,649,623	-				+1.0
4,649,676	+				+2.2
4,649,677	-				-0.2
4,649,677	-				+2.1
4,649,805	+		HGI48_RS20830	0.13	+0.8
4,649,805	+		HGI48_RS20830	0.13	+0.7
4,649,806	-		HGI48_RS20830	0.13	+1.4
4,649,806	-		HGI48_RS20830	0.13	-1.0
4,649,910	+		HGI48_RS20830	0.20	+1.2
4,649,910	+		HGI48_RS20830	0.20	+1.0
4,649,910	+		HGI48_RS20830	0.20	+1.5
4,649,911	-		HGI48_RS20830	0.20	-1.3
4,649,911	-		HGI48_RS20830	0.20	+1.0
4,649,911	-		HGI48_RS20830	0.20	-0.3
4,650,088	-		HGI48_RS20830	0.32	-1.6
4,650,088	-		HGI48_RS20830	0.32	+1.5
4,650,088	-				+2.4
4,650,088	-		HGI48_RS20830	0.32	-0.6
4,650,154	+		HGI48_RS20830	0.37	-0.3
4,650,155	-		HGI48_RS20830	0.37	+1.4
4,650,155	-		HGI48_RS20830	0.37	-1.8
4,650,155	-		HGI48_RS20830	0.37	+1.5
4,650,260	-		HGI48_RS20830	0.44	+1.9
4,650,397	+		HGI48_RS20830	0.53	-1.1
4,650,398	-		HGI48_RS20830	0.53	+1.8
4,650,417	+				+3.2
4,650,417	+		HGI48_RS20830	0.55	+1.5
4,650,417	+		HGI48_RS20830	0.55	+0.3
4,650,417	+		HGI48_RS20830	0.55	+0.9
4,650,417	+		HGI48_RS20830	0.55	+1.9
4,650,418	-		HGI48_RS20830	0.55	-1.9
4,650,418	-		HGI48_RS20830	0.55	+0.6
4,650,442	-		HGI48_RS20830	0.56	+1.4
4,650,442	-		HGI48_RS20830	0.56	+0.8
4,650,453	+		HGI48_RS20830	0.57	+1.1
4,650,453	+		HGI48_RS20830	0.57	+0.3
4,650,456	+		HGI48_RS20830	0.57	+1.0
4,650,456	+		HGI48_RS20830	0.57	+0.1
4,650,457	-		HGI48_RS20830	0.57	-2.1
4,650,490	+		HGI48_RS20830	0.60	-2.9
4,650,490	+		HGI48_RS20830	0.60	-2.6
4,650,510	+		HGI48_RS20830	0.61	+1.0
4,650,510	+		HGI48_RS20830	0.61	+0.2
4,650,511	-		HGI48_RS20830	0.61	+1.0
4,650,511	-		HGI48_RS20830	0.61	+0.8
4,650,511	-		HGI48_RS20830	0.61	+1.7
4,650,619	+		HGI48_RS20830	0.68	+1.5
4,650,626	-		HGI48_RS20830	0.69	+0.8
4,650,695	-				+0.0
4,650,695	-		HGI48_RS20830	0.74	-0.1
4,650,711	+		HGI48_RS20830	0.75	+1.2
4,650,711	+		HGI48_RS20830	0.75	+1.1
4,650,711	+		HGI48_RS20830	0.75	+0.9
4,650,712	-		HGI48_RS20830	0.75	+1.2
4,650,712	-		HGI48_RS20830	0.75	+0.0
4,650,712	-				+1.4
4,650,712	-		HGI48_RS20830	0.75	+0.6
4,650,712	-		HGI48_RS20830	0.75	-0.3
4,650,718	+		HGI48_RS20830	0.75	+0.9
4,650,718	+		HGI48_RS20830	0.75	+2.2
4,650,718	+		HGI48_RS20830	0.75	+1.3
4,650,718	+		HGI48_RS20830	0.75	+0.1
4,650,719	-		HGI48_RS20830	0.75	+1.3
4,650,719	-				+3.7
4,650,719	-		HGI48_RS20830	0.75	+2.3
4,650,719	-		HGI48_RS20830	0.75	-2.1
4,650,726	+		HGI48_RS20830	0.76	+1.0
4,650,726	+		HGI48_RS20830	0.76	+1.4
4,650,726	+		HGI48_RS20830	0.76	+1.5
4,650,727	-		HGI48_RS20830	0.76	+1.2
4,650,902	+				-0.6
4,650,903	-		HGI48_RS20830	0.88	-1.0
4,650,903	-		HGI48_RS20830	0.88	+2.4
4,650,952	+				+0.0
4,650,952	+				+1.9
4,650,998	+				+0.0
4,650,998	+				+0.0
4,650,999	-				+1.3
4,651,088	+				+0.9
4,651,107	+				-0.6
4,651,108	-				+0.1
4,651,108	-				-3.1
4,651,108	-				-1.2
4,651,108	-				+1.0
4,651,113	-				+0.5
4,651,113	-				-0.3
4,651,160	+				+1.3
4,651,160	+				-0.6
4,651,161	-				-0.3
4,651,161	-				+0.0
4,651,242	+				-1.0
4,651,242	+				-1.8
4,651,242	+				-0.6
4,651,243	-				-0.8
4,651,243	-				+2.0
4,651,243	-				+2.1
4,651,243	-				-1.4
4,651,243	-				+0.0
4,651,243	-				-1.6
4,651,243	-				-0.4
4,651,243	-				-1.3
4,651,304	+				+0.3
4,651,304	+				+0.0
4,651,305	-				-1.0
4,651,305	-				-0.8
4,651,315	-				-1.0
4,651,345	+				-0.1
4,651,346	-				+2.3
4,651,346	-				-1.2
4,651,356	+				+0.0
4,651,357	-				-1.3
4,651,375	+				-1.4
4,651,375	+				+0.0
4,651,376	-				-0.2
4,651,376	-				-0.4
4,651,397	+				+0.8
4,651,397	+				+1.2
4,651,424	-				+1.6
4,651,429	+				-0.8
4,651,509	-				-0.8
4,651,509	-				+0.3
4,651,509	-				-0.2
4,651,590	+				-1.3
4,651,743	+		HGI48_RS20835	0.18	+1.1
4,651,808	-		HGI48_RS20835	0.23	-1.0
4,651,874	+		HGI48_RS20835	0.28	-0.7
4,651,875	-				+1.0
4,651,875	-				+0.0
4,651,875	-		HGI48_RS20835	0.28	-1.6
4,651,875	-		HGI48_RS20835	0.28	+0.4
4,651,941	+		HGI48_RS20835	0.33	-1.3
4,651,971	+		HGI48_RS20835	0.36	-0.3
4,651,972	-		HGI48_RS20835	0.36	+1.0
4,652,008	+		HGI48_RS20835	0.39	+1.0
4,652,033	+		HGI48_RS20835	0.41	+0.7
4,652,034	-		HGI48_RS20835	0.41	+1.5
4,652,055	+		HGI48_RS20835	0.42	-0.4
4,652,076	+		HGI48_RS20835	0.44	-0.7
4,652,077	-		HGI48_RS20835	0.44	-0.4