Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20290

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,535,916	+				+0.9
4,535,921	-				+0.5
4,535,921	-				-0.3
4,535,921	-				-0.3
4,535,949	+				-1.6
4,535,949	+				-0.3
4,535,950	-				-0.2
4,535,950	-				+0.2
4,536,043	+		HGI48_RS20285	0.12	+1.3
4,536,044	-		HGI48_RS20285	0.12	+1.0
4,536,044	-		HGI48_RS20285	0.12	+1.5
4,536,044	-		HGI48_RS20285	0.12	-1.6
4,536,049	+		HGI48_RS20285	0.13	-0.6
4,536,049	+		HGI48_RS20285	0.13	-0.6
4,536,050	-		HGI48_RS20285	0.13	-1.4
4,536,050	-		HGI48_RS20285	0.13	+1.8
4,536,050	-		HGI48_RS20285	0.13	-0.2
4,536,152	+		HGI48_RS20285	0.27	-2.2
4,536,153	-		HGI48_RS20285	0.27	+1.7
4,536,153	-		HGI48_RS20285	0.27	+0.1
4,536,153	-		HGI48_RS20285	0.27	+0.4
4,536,160	+		HGI48_RS20285	0.28	-0.4
4,536,161	-		HGI48_RS20285	0.28	+0.3
4,536,161	-		HGI48_RS20285	0.28	-0.6
4,536,191	+		HGI48_RS20285	0.32	-1.0
4,536,208	+		HGI48_RS20285	0.34	+0.3
4,536,208	+		HGI48_RS20285	0.34	+0.6
4,536,208	+		HGI48_RS20285	0.34	-0.3
4,536,208	+		HGI48_RS20285	0.34	+0.3
4,536,325	+		HGI48_RS20285	0.50	-2.0
4,536,325	+		HGI48_RS20285	0.50	-1.3
4,536,325	+		HGI48_RS20285	0.50	+1.2
4,536,325	+		HGI48_RS20285	0.50	-1.6
4,536,325	+				+1.0
4,536,326	-		HGI48_RS20285	0.50	-0.0
4,536,326	-		HGI48_RS20285	0.50	-0.1
4,536,326	-		HGI48_RS20285	0.50	-0.6
4,536,326	-		HGI48_RS20285	0.50	+0.5
4,536,328	+				+1.0
4,536,374	-		HGI48_RS20285	0.57	+0.7
4,536,405	-		HGI48_RS20285	0.61	-0.5
4,536,592	+		HGI48_RS20285	0.86	+0.5
4,536,593	-		HGI48_RS20285	0.86	-1.3
4,536,593	-		HGI48_RS20285	0.86	+0.3
4,536,639	+				-1.0
4,536,640	-				+1.5
4,536,749	+				+0.7
4,536,749	+				-0.3
4,536,750	-				-0.0
4,536,750	-				-1.3
4,536,750	-				-1.0
4,536,750	-				-1.0
4,536,755	-				-1.3
4,536,882	+				+0.3
4,536,994	+		HGI48_RS20290	0.11	-0.6
4,536,995	-		HGI48_RS20290	0.11	-0.3
4,537,002	+				+1.7
4,537,002	+		HGI48_RS20290	0.11	-0.2
4,537,003	-				-0.6
4,537,003	-		HGI48_RS20290	0.11	-0.5
4,537,016	-		HGI48_RS20290	0.12	-0.6
4,537,016	-		HGI48_RS20290	0.12	-1.0
4,537,065	+		HGI48_RS20290	0.15	+1.1
4,537,065	+		HGI48_RS20290	0.15	-0.3
4,537,065	+				+1.0
4,537,065	+		HGI48_RS20290	0.15	-2.4
4,537,066	-				+0.4
4,537,066	-		HGI48_RS20290	0.15	-1.8
4,537,066	-		HGI48_RS20290	0.15	-0.8
4,537,066	-		HGI48_RS20290	0.15	-0.4
4,537,066	-		HGI48_RS20290	0.15	-1.4
4,537,066	-		HGI48_RS20290	0.15	+1.3
4,537,110	+		HGI48_RS20290	0.18	-1.0
4,537,110	+		HGI48_RS20290	0.18	-2.2
4,537,110	+		HGI48_RS20290	0.18	-0.6
4,537,111	-		HGI48_RS20290	0.18	-0.4
4,537,111	-		HGI48_RS20290	0.18	-0.4
4,537,111	-		HGI48_RS20290	0.18	-1.2
4,537,111	-		HGI48_RS20290	0.18	+1.0
4,537,111	-		HGI48_RS20290	0.18	-0.6
4,537,111	-		HGI48_RS20290	0.18	+0.3
4,537,237	+		HGI48_RS20290	0.27	-1.3
4,537,260	+		HGI48_RS20290	0.28	-0.1
4,537,266	+				-0.6
4,537,266	+		HGI48_RS20290	0.28	-1.0
4,537,266	+		HGI48_RS20290	0.28	-1.8
4,537,266	+		HGI48_RS20290	0.28	-1.8
4,537,267	-		HGI48_RS20290	0.28	-0.1
4,537,267	-		HGI48_RS20290	0.28	-0.4
4,537,395	+		HGI48_RS20290	0.37	-2.6
4,537,395	+				-0.6
4,537,395	+		HGI48_RS20290	0.37	-1.3
4,537,396	-		HGI48_RS20290	0.37	-0.6
4,537,396	-		HGI48_RS20290	0.37	-1.1
4,537,396	-		HGI48_RS20290	0.37	+0.3
4,537,396	-		HGI48_RS20290	0.37	-1.3
4,537,396	-		HGI48_RS20290	0.37	-1.2
4,537,396	-		HGI48_RS20290	0.37	-0.8
4,537,421	-		HGI48_RS20290	0.38	-0.6
4,537,435	+		HGI48_RS20290	0.39	-0.4
4,537,436	-		HGI48_RS20290	0.39	-2.6
4,537,436	-		HGI48_RS20290	0.39	-2.6
4,537,459	+		HGI48_RS20290	0.41	-1.6
4,537,460	-		HGI48_RS20290	0.41	-0.0
4,537,477	-		HGI48_RS20290	0.42	+1.3
4,537,564	+		HGI48_RS20290	0.48	-1.1
4,537,564	+		HGI48_RS20290	0.48	-1.3
4,537,564	+		HGI48_RS20290	0.48	+0.4
4,537,583	-				-0.0
4,537,583	-		HGI48_RS20290	0.49	-0.0
4,537,599	+		HGI48_RS20290	0.50	-2.2
4,537,599	+		HGI48_RS20290	0.50	-2.2
4,537,600	-		HGI48_RS20290	0.50	-1.5
4,537,771	+		HGI48_RS20290	0.61	-1.6
4,537,824	-		HGI48_RS20290	0.65	-1.3
4,537,921	+		HGI48_RS20290	0.71	+1.3
4,537,921	+				-0.0
4,537,921	+		HGI48_RS20290	0.71	-1.5
4,537,921	+		HGI48_RS20290	0.71	-1.2
4,537,922	-		HGI48_RS20290	0.71	+0.4
4,537,922	-		HGI48_RS20290	0.71	-0.0
4,537,922	-		HGI48_RS20290	0.71	-2.0
4,537,922	-		HGI48_RS20290	0.71	-0.3
4,537,922	-		HGI48_RS20290	0.71	-2.5
4,537,922	-		HGI48_RS20290	0.71	-1.3
4,537,922	-				-0.6
4,538,194	+		HGI48_RS20290	0.88	+0.1
4,538,194	+		HGI48_RS20290	0.88	-0.4
4,538,194	+		HGI48_RS20290	0.88	-2.4
4,538,194	+		HGI48_RS20290	0.88	-1.5
4,538,194	+		HGI48_RS20290	0.88	-0.0
4,538,195	-		HGI48_RS20290	0.89	-0.9
4,538,195	-		HGI48_RS20290	0.89	-1.7
4,538,195	-		HGI48_RS20290	0.89	-1.0
4,538,195	-		HGI48_RS20290	0.89	-1.3
4,538,195	-		HGI48_RS20290	0.89	-0.0
4,538,195	-		HGI48_RS20290	0.89	-0.3
4,538,195	-		HGI48_RS20290	0.89	+0.6
4,538,195	-		HGI48_RS20290	0.89	-0.0
4,538,257	+				-2.0
4,538,257	+				-2.1
4,538,257	+				+0.6
4,538,289	-				-0.6
4,538,295	+				+1.0
4,538,295	+				-1.6
4,538,295	+				-1.8
4,538,295	+				-1.5
4,538,295	+				-1.6
4,538,295	+				-1.0
4,538,295	+				+0.5
4,538,296	-				+0.5
4,538,296	-				+1.0
4,538,325	+				-2.2
4,538,326	-				-0.6
4,538,378	+				+0.2
4,538,441	+				-1.9
4,538,712	+		HGI48_RS20295	0.18	-2.6
4,538,790	-		HGI48_RS20295	0.22	-2.0
4,538,864	+		HGI48_RS20295	0.26	+1.3
4,538,864	+		HGI48_RS20295	0.26	-1.0
4,538,864	+				-0.6
4,538,864	+		HGI48_RS20295	0.26	-2.2
4,538,865	-		HGI48_RS20295	0.26	+1.8
4,538,865	-		HGI48_RS20295	0.26	-1.3
4,538,865	-		HGI48_RS20295	0.26	-3.5
4,538,865	-		HGI48_RS20295	0.26	-2.2
4,538,925	+		HGI48_RS20295	0.30	-1.3
4,538,925	+		HGI48_RS20295	0.30	-1.3
4,538,926	-		HGI48_RS20295	0.30	-0.9
4,538,951	+		HGI48_RS20295	0.31	-1.3
4,538,951	+		HGI48_RS20295	0.31	+0.3
4,538,951	+		HGI48_RS20295	0.31	-1.6
4,538,951	+		HGI48_RS20295	0.31	-1.8
4,538,951	+		HGI48_RS20295	0.31	-2.1
4,538,952	-		HGI48_RS20295	0.31	-3.6
4,538,952	-		HGI48_RS20295	0.31	+1.0
4,538,981	+		HGI48_RS20295	0.33	-1.3
4,539,137	+		HGI48_RS20295	0.41	-1.8
4,539,137	+		HGI48_RS20295	0.41	-3.0
4,539,225	+		HGI48_RS20295	0.46	-3.5
4,539,226	-		HGI48_RS20295	0.46	-1.6
4,539,266	+		HGI48_RS20295	0.48	-2.4
4,539,266	+		HGI48_RS20295	0.48	-0.3
4,539,267	-		HGI48_RS20295	0.48	-0.8
4,539,267	-		HGI48_RS20295	0.48	-2.3
4,539,267	-		HGI48_RS20295	0.48	-0.6
4,539,336	+				-0.6
4,539,337	-		HGI48_RS20295	0.52	+0.5