Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS11100 and HGI48_RS11105 overlap by 4 nucleotides HGI48_RS11105 and HGI48_RS11110 are separated by 348 nucleotides HGI48_RS11110 and HGI48_RS11115 are separated by 36 nucleotides
HGI48_RS11100: HGI48_RS11100 - exodeoxyribonuclease V subunit beta, at 2,407,081 to 2,410,764
_RS11100
HGI48_RS11105: HGI48_RS11105 - exodeoxyribonuclease V subunit gamma, at 2,410,761 to 2,414,237
_RS11105
HGI48_RS11110: HGI48_RS11110 - CesT family type III secretion system chaperone, at 2,414,586 to 2,415,053
_RS11110
HGI48_RS11115: HGI48_RS11115 - AvrE-family type 3 secretion system effector, at 2,415,090 to 2,419,970
_RS11115
Position (kb)
2410
2411
2412
2413
2414
2415 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2410.748 kb on - strand at 2414.221 kb on - strand at 2414.299 kb on - strand at 2414.303 kb on + strand at 2414.303 kb on + strand at 2414.304 kb on - strand at 2414.450 kb on + strand at 2414.451 kb on - strand at 2414.543 kb on + strand at 2414.543 kb on + strand at 2414.543 kb on + strand at 2414.544 kb on - strand at 2414.544 kb on - strand at 2414.544 kb on - strand at 2414.544 kb on - strand at 2414.544 kb on - strand at 2414.545 kb on + strand at 2414.546 kb on - strand at 2414.569 kb on + strand at 2414.569 kb on + strand at 2414.569 kb on + strand at 2414.570 kb on - strand at 2414.570 kb on - strand at 2414.570 kb on - strand at 2414.570 kb on - strand at 2414.654 kb on - strand, within HGI48_RS11110 at 2414.731 kb on + strand at 2414.732 kb on - strand, within HGI48_RS11110 at 2414.800 kb on + strand, within HGI48_RS11110 at 2414.801 kb on - strand, within HGI48_RS11110 at 2414.874 kb on + strand at 2414.924 kb on + strand, within HGI48_RS11110 at 2414.924 kb on + strand, within HGI48_RS11110 at 2414.925 kb on - strand, within HGI48_RS11110 at 2415.225 kb on - strand at 2415.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 2,410,748 - -0.1 2,414,221 - +0.7 2,414,299 - +0.2 2,414,303 + -0.4 2,414,303 + +1.4 2,414,304 - -0.8 2,414,450 + -0.6 2,414,451 - -1.2 2,414,543 + +1.6 2,414,543 + -0.6 2,414,543 + +0.6 2,414,544 - -0.5 2,414,544 - +0.1 2,414,544 - -1.6 2,414,544 - -1.9 2,414,544 - -1.4 2,414,545 + -0.2 2,414,546 - +0.6 2,414,569 + -1.5 2,414,569 + +1.2 2,414,569 + -0.1 2,414,570 - +0.4 2,414,570 - +1.2 2,414,570 - +0.7 2,414,570 - +0.9 2,414,654 - HGI48_RS11110 0.15 +0.7 2,414,731 + -0.2 2,414,732 - HGI48_RS11110 0.31 -0.1 2,414,800 + HGI48_RS11110 0.46 -0.1 2,414,801 - HGI48_RS11110 0.46 +1.8 2,414,874 + +2.4 2,414,924 + HGI48_RS11110 0.72 -0.0 2,414,924 + HGI48_RS11110 0.72 -1.4 2,414,925 - HGI48_RS11110 0.72 +0.9 2,415,225 - -0.3 2,415,225 - -0.3
Or see this region's nucleotide sequence