Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10410

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,245,774	+		HGI48_RS10400	0.51	+0.7
2,245,970	-		HGI48_RS10400	0.70	-1.2
2,245,973	+		HGI48_RS10400	0.71	-0.6
2,245,973	+				-0.2
2,245,973	+		HGI48_RS10400	0.71	-1.0
2,245,973	+		HGI48_RS10400	0.71	+0.4
2,245,974	-				+0.4
2,246,015	+		HGI48_RS10400	0.75	+0.0
2,246,036	+		HGI48_RS10400	0.77	+0.4
2,246,036	+		HGI48_RS10400	0.77	-0.3
2,246,037	-		HGI48_RS10400	0.77	+0.0
2,246,037	-		HGI48_RS10400	0.77	-0.6
2,246,154	+		HGI48_RS10400	0.89	-0.2
2,246,154	+		HGI48_RS10400	0.89	+0.8
2,246,155	-		HGI48_RS10400	0.89	-0.3
2,246,264	+				+0.4
2,246,265	-				-0.6
2,246,285	+				-2.2
2,246,286	-				+0.4
2,246,286	-				-1.2
2,246,300	-				-3.9
2,246,302	+				-1.7
2,246,650	+		HGI48_RS10405	0.85	-0.6
2,246,651	-		HGI48_RS10405	0.85	+1.0
2,246,698	+				-1.2
2,246,699	+				-0.4
2,246,699	+				-1.4
2,246,700	-				-0.9
2,246,700	-				-1.6
2,246,700	-				+0.4
2,246,700	-				+0.0
2,246,732	-				+1.2
2,246,754	+				+1.4
2,246,754	+				+0.4
2,246,755	-				+0.4
2,246,856	+				+0.7
2,246,856	+				-1.7
2,246,856	+				-0.6
2,246,856	+				-0.6
2,246,856	+				-2.2
2,246,856	+				+0.0
2,246,856	+				-0.2
2,246,856	+				-0.6
2,246,856	+				-2.3
2,246,856	+				-2.6
2,246,856	+				-2.6
2,246,856	+				-2.4
2,246,856	+				-0.6
2,246,857	-				+0.0
2,246,857	-				-1.0
2,246,857	-				-1.0
2,246,857	-				-0.6
2,246,857	-				-0.6
2,246,857	-				+0.0
2,246,857	-				-1.4
2,246,857	-				+0.4
2,246,857	-				-1.4
2,246,857	-				-0.5
2,246,857	-				-0.7
2,246,857	-				-1.1
2,246,857	-				-0.7
2,246,944	+				+0.8
2,246,998	+		HGI48_RS10410	0.17	-1.0
2,246,999	-				+1.4
2,246,999	-		HGI48_RS10410	0.17	+1.0
2,247,028	-		HGI48_RS10410	0.19	-1.6
2,247,028	-		HGI48_RS10410	0.19	-1.6
2,247,050	+		HGI48_RS10410	0.20	+0.1
2,247,051	-		HGI48_RS10410	0.20	-0.7
2,247,051	-		HGI48_RS10410	0.20	-2.6
2,247,149	-		HGI48_RS10410	0.27	-0.9
2,247,186	+		HGI48_RS10410	0.30	-3.8
2,247,187	-		HGI48_RS10410	0.30	+0.0
2,247,223	-		HGI48_RS10410	0.32	-2.2
2,247,253	+		HGI48_RS10410	0.34	-1.2
2,247,254	-		HGI48_RS10410	0.34	-0.1
2,247,283	+		HGI48_RS10410	0.36	-0.6
2,247,295	+		HGI48_RS10410	0.37	-2.6
2,247,295	+		HGI48_RS10410	0.37	-0.1
2,247,326	-		HGI48_RS10410	0.39	-2.6
2,247,326	-				-0.6
2,247,387	+		HGI48_RS10410	0.43	-0.8
2,247,387	+		HGI48_RS10410	0.43	-0.8
2,247,387	+		HGI48_RS10410	0.43	-1.9
2,247,388	-		HGI48_RS10410	0.43	-0.2
2,247,388	-		HGI48_RS10410	0.43	-0.9
2,247,388	-				-1.2
2,247,388	-		HGI48_RS10410	0.43	-1.6
2,247,388	-				+0.4
2,247,388	-				-0.2
2,247,388	-		HGI48_RS10410	0.43	-0.6
2,247,474	+		HGI48_RS10410	0.49	-3.3
2,247,475	-		HGI48_RS10410	0.49	-1.6
2,247,490	+		HGI48_RS10410	0.50	+1.1
2,247,491	-				+0.4
2,247,491	-		HGI48_RS10410	0.51	-0.3
2,247,491	-		HGI48_RS10410	0.51	-1.9
2,247,491	-				-1.2
2,247,507	+		HGI48_RS10410	0.52	-3.7
2,247,508	-		HGI48_RS10410	0.52	+0.4
2,247,514	+		HGI48_RS10410	0.52	-0.2
2,247,532	+		HGI48_RS10410	0.53	-2.2
2,247,538	+		HGI48_RS10410	0.54	-2.4
2,247,538	+		HGI48_RS10410	0.54	-2.6
2,247,539	-		HGI48_RS10410	0.54	+0.7
2,247,593	+		HGI48_RS10410	0.57	-1.6
2,247,640	-		HGI48_RS10410	0.61	-1.3
2,247,763	+		HGI48_RS10410	0.69	-0.6
2,247,765	+		HGI48_RS10410	0.69	-2.4
2,247,765	+		HGI48_RS10410	0.69	+0.3
2,247,765	+		HGI48_RS10410	0.69	+0.4
2,247,765	+		HGI48_RS10410	0.69	+0.6
2,247,765	+		HGI48_RS10410	0.69	-2.0
2,247,765	+		HGI48_RS10410	0.69	-1.8
2,247,766	-		HGI48_RS10410	0.69	-1.4
2,247,766	-		HGI48_RS10410	0.69	-0.7
2,247,766	-		HGI48_RS10410	0.69	-0.3
2,247,766	-		HGI48_RS10410	0.69	-0.4
2,247,766	-		HGI48_RS10410	0.69	-0.5
2,247,766	-		HGI48_RS10410	0.69	-0.6
2,247,766	-		HGI48_RS10410	0.69	+0.6
2,247,766	-		HGI48_RS10410	0.69	-2.5
2,247,766	-		HGI48_RS10410	0.69	+0.3
2,247,766	-		HGI48_RS10410	0.69	-2.4
2,247,766	-		HGI48_RS10410	0.69	-2.3
2,247,818	-		HGI48_RS10410	0.73	-1.9
2,247,818	-		HGI48_RS10410	0.73	+1.0
2,248,044	-		HGI48_RS10410	0.88	+1.2
2,248,050	+		HGI48_RS10410	0.89	-0.3
2,248,051	-		HGI48_RS10410	0.89	+0.2
2,248,051	-		HGI48_RS10410	0.89	-1.2
2,248,051	-		HGI48_RS10410	0.89	+0.4
2,248,051	-		HGI48_RS10410	0.89	-0.6
2,248,078	+				-0.6
2,248,079	-				+0.2
2,248,080	+				-0.7
2,248,081	-				-1.6
2,248,081	-				-0.9
2,248,081	-				-3.0
2,248,081	-				-1.9
2,248,081	-				-1.7
2,248,135	+				+0.0
2,248,135	+				-1.9
2,248,135	+				-1.2
2,248,144	+				+0.1
2,248,144	+				-1.2
2,248,144	+				-2.4
2,248,144	+				-1.4
2,248,145	-				-1.3
2,248,145	-				-3.2
2,248,145	-				-1.4
2,248,167	+				-0.7
2,248,168	-				+0.6
2,248,193	+				-0.6
2,248,193	+				-0.3
2,248,198	+				-2.6
2,248,200	+				-1.5
2,248,201	-				-0.5
2,248,201	-				+0.4
2,248,201	-				-0.8
2,248,201	-				-1.0
2,248,201	-				-0.2
2,248,213	+				-1.4
2,248,216	+				+0.6
2,248,217	-				-0.6
2,248,305	+				-0.9
2,248,305	+				+0.4
2,248,306	-				+1.8
2,248,307	+				-0.1
2,248,307	+				-0.3
2,248,307	+				-0.7
2,248,307	+				+1.1
2,248,308	-				+0.1
2,248,308	-				+1.3
2,248,315	-				+0.4
2,248,315	-				-0.4
2,248,379	-				+1.8
2,248,379	-				-1.4
2,248,380	+				-0.6
2,248,380	+				-0.3
2,248,380	+				+1.4
2,248,381	-				-0.6
2,248,381	-				-0.8
2,248,402	+				-1.9
2,248,402	+				-1.2
2,248,575	-		HGI48_RS10415	0.67	+0.8
2,248,610	+		HGI48_RS10415	0.86	-0.4
2,248,610	+		HGI48_RS10415	0.86	-0.3
2,248,611	-		HGI48_RS10415	0.87	-0.2
2,248,642	+				-0.3
2,248,642	+				-0.3
2,248,642	+				-0.6
2,248,703	+				+0.4
2,248,703	+				+0.9
2,248,704	-				-0.8
2,248,704	-				-1.1
2,248,704	-				-0.9
2,248,704	-				-2.2
2,248,737	-				-0.6
2,248,737	-				+1.4
2,248,848	+				-0.0
2,248,947	+		HGI48_RS10420	0.14	-0.3
2,248,947	+		HGI48_RS10420	0.14	-2.4
2,248,971	+		HGI48_RS10420	0.16	+0.2
2,248,972	-		HGI48_RS10420	0.16	-1.3
2,248,972	-		HGI48_RS10420	0.16	-0.2
2,248,972	-		HGI48_RS10420	0.16	+1.0
2,249,029	+				+1.8
2,249,030	-		HGI48_RS10420	0.19	-0.9
2,249,030	-		HGI48_RS10420	0.19	-0.6