Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07020

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS07015 and HGI48_RS07020 overlap by 11 nucleotidesHGI48_RS07020 and HGI48_RS07025 overlap by 8 nucleotidesHGI48_RS07025 and HGI48_RS07030 are separated by 2 nucleotidesHGI48_RS07030 and HGI48_RS07035 overlap by 4 nucleotides HGI48_RS07015: HGI48_RS07015 - alanine--glyoxylate aminotransferase family protein, at 1,488,694 to 1,489,794 _RS07015 HGI48_RS07020: HGI48_RS07020 - GNAT family N-acetyltransferase, at 1,489,784 to 1,490,803 _RS07020 HGI48_RS07025: HGI48_RS07025 - Trm112 family protein, at 1,490,796 to 1,490,960 _RS07025 HGI48_RS07030: HGI48_RS07030 - methyltransferase domain-containing protein, at 1,490,963 to 1,491,790 _RS07030 HGI48_RS07035: HGI48_RS07035 - ATP-grasp domain-containing protein, at 1,491,787 to 1,492,983 _RS07035 Position (kb) 1489 1490 1491Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1488.900 kb on + strand, within HGI48_RS07015at 1488.903 kb on + strand, within HGI48_RS07015at 1489.069 kb on + strand, within HGI48_RS07015at 1489.069 kb on + strand, within HGI48_RS07015at 1489.069 kb on + strand, within HGI48_RS07015at 1489.069 kb on + strand, within HGI48_RS07015at 1489.069 kb on + strand, within HGI48_RS07015at 1489.069 kb on + strand, within HGI48_RS07015at 1489.070 kb on - strand, within HGI48_RS07015at 1489.070 kb on - strand, within HGI48_RS07015at 1489.070 kb on - strand, within HGI48_RS07015at 1489.070 kb on - strand, within HGI48_RS07015at 1489.070 kb on - strand, within HGI48_RS07015at 1489.070 kb on - strand, within HGI48_RS07015at 1489.070 kb on - strand, within HGI48_RS07015at 1489.114 kb on + strandat 1489.114 kb on + strand, within HGI48_RS07015at 1489.114 kb on + strand, within HGI48_RS07015at 1489.114 kb on + strand, within HGI48_RS07015at 1489.114 kb on + strand, within HGI48_RS07015at 1489.114 kb on + strand, within HGI48_RS07015at 1489.114 kb on + strand, within HGI48_RS07015at 1489.115 kb on - strand, within HGI48_RS07015at 1489.115 kb on - strand, within HGI48_RS07015at 1489.115 kb on - strandat 1489.115 kb on - strand, within HGI48_RS07015at 1489.115 kb on - strand, within HGI48_RS07015at 1489.193 kb on + strand, within HGI48_RS07015at 1489.213 kb on - strand, within HGI48_RS07015at 1489.291 kb on + strand, within HGI48_RS07015at 1489.291 kb on + strand, within HGI48_RS07015at 1489.292 kb on - strand, within HGI48_RS07015at 1489.292 kb on - strand, within HGI48_RS07015at 1489.348 kb on + strand, within HGI48_RS07015at 1489.348 kb on + strand, within HGI48_RS07015at 1489.349 kb on - strand, within HGI48_RS07015at 1489.349 kb on - strand, within HGI48_RS07015at 1489.349 kb on - strand, within HGI48_RS07015at 1489.349 kb on - strandat 1489.350 kb on + strand, within HGI48_RS07015at 1489.350 kb on + strand, within HGI48_RS07015at 1489.350 kb on + strandat 1489.350 kb on + strand, within HGI48_RS07015at 1489.350 kb on + strand, within HGI48_RS07015at 1489.350 kb on + strand, within HGI48_RS07015at 1489.351 kb on - strand, within HGI48_RS07015at 1489.351 kb on - strand, within HGI48_RS07015at 1489.351 kb on - strand, within HGI48_RS07015at 1489.351 kb on - strand, within HGI48_RS07015at 1489.351 kb on - strand, within HGI48_RS07015at 1489.351 kb on - strand, within HGI48_RS07015at 1489.351 kb on - strand, within HGI48_RS07015at 1489.351 kb on - strand, within HGI48_RS07015at 1489.351 kb on - strand, within HGI48_RS07015at 1489.351 kb on - strand, within HGI48_RS07015at 1489.351 kb on - strand, within HGI48_RS07015at 1489.400 kb on - strand, within HGI48_RS07015at 1489.401 kb on + strand, within HGI48_RS07015at 1489.443 kb on - strand, within HGI48_RS07015at 1489.561 kb on + strand, within HGI48_RS07015at 1489.588 kb on + strand, within HGI48_RS07015at 1489.588 kb on + strand, within HGI48_RS07015at 1489.588 kb on + strand, within HGI48_RS07015at 1489.589 kb on - strandat 1489.589 kb on - strand, within HGI48_RS07015at 1489.688 kb on + strandat 1489.688 kb on + strandat 1489.712 kb on - strandat 1489.712 kb on - strandat 1489.742 kb on + strandat 1489.743 kb on - strandat 1489.763 kb on + strandat 1489.763 kb on + strandat 1489.792 kb on + strandat 1489.793 kb on - strandat 1489.793 kb on - strandat 1489.825 kb on + strandat 1489.825 kb on + strandat 1489.825 kb on + strandat 1489.825 kb on + strandat 1489.826 kb on - strandat 1489.826 kb on - strandat 1489.826 kb on - strandat 1489.911 kb on + strand, within HGI48_RS07020at 1489.912 kb on - strand, within HGI48_RS07020at 1489.931 kb on + strand, within HGI48_RS07020at 1489.932 kb on - strand, within HGI48_RS07020at 1489.932 kb on - strand, within HGI48_RS07020at 1489.934 kb on + strand, within HGI48_RS07020at 1489.934 kb on + strand, within HGI48_RS07020at 1489.935 kb on - strand, within HGI48_RS07020at 1489.935 kb on - strand, within HGI48_RS07020at 1489.935 kb on - strand, within HGI48_RS07020at 1489.935 kb on - strand, within HGI48_RS07020at 1489.982 kb on + strand, within HGI48_RS07020at 1489.983 kb on - strand, within HGI48_RS07020at 1490.014 kb on - strand, within HGI48_RS07020at 1490.050 kb on + strandat 1490.050 kb on + strand, within HGI48_RS07020at 1490.061 kb on + strand, within HGI48_RS07020at 1490.062 kb on - strand, within HGI48_RS07020at 1490.153 kb on - strand, within HGI48_RS07020at 1490.257 kb on + strand, within HGI48_RS07020at 1490.272 kb on + strand, within HGI48_RS07020at 1490.465 kb on - strand, within HGI48_RS07020at 1490.475 kb on - strand, within HGI48_RS07020at 1490.475 kb on - strand, within HGI48_RS07020at 1490.477 kb on + strand, within HGI48_RS07020at 1490.624 kb on + strand, within HGI48_RS07020at 1490.649 kb on - strand, within HGI48_RS07020at 1490.661 kb on - strand, within HGI48_RS07020at 1490.672 kb on + strandat 1490.673 kb on - strand, within HGI48_RS07020at 1490.673 kb on - strand, within HGI48_RS07020at 1490.732 kb on - strandat 1490.768 kb on + strandat 1490.795 kb on + strandat 1490.801 kb on + strandat 1490.801 kb on + strandat 1490.836 kb on + strand, within HGI48_RS07025at 1490.837 kb on - strand, within HGI48_RS07025at 1490.845 kb on + strand, within HGI48_RS07025at 1490.846 kb on - strand, within HGI48_RS07025at 1490.856 kb on + strand, within HGI48_RS07025at 1490.856 kb on + strand, within HGI48_RS07025at 1490.879 kb on + strand, within HGI48_RS07025at 1490.879 kb on + strand, within HGI48_RS07025at 1490.880 kb on - strand, within HGI48_RS07025at 1490.880 kb on - strand, within HGI48_RS07025at 1490.880 kb on - strand, within HGI48_RS07025at 1490.982 kb on - strandat 1491.002 kb on + strandat 1491.047 kb on + strand, within HGI48_RS07030at 1491.049 kb on + strand, within HGI48_RS07030at 1491.049 kb on + strand, within HGI48_RS07030at 1491.049 kb on + strandat 1491.050 kb on - strand, within HGI48_RS07030at 1491.050 kb on - strand, within HGI48_RS07030at 1491.116 kb on + strandat 1491.116 kb on + strand, within HGI48_RS07030at 1491.116 kb on + strand, within HGI48_RS07030at 1491.116 kb on + strand, within HGI48_RS07030at 1491.117 kb on - strand, within HGI48_RS07030at 1491.180 kb on + strand, within HGI48_RS07030at 1491.180 kb on + strand, within HGI48_RS07030at 1491.223 kb on + strand, within HGI48_RS07030at 1491.229 kb on - strand, within HGI48_RS07030at 1491.231 kb on + strand, within HGI48_RS07030at 1491.247 kb on + strand, within HGI48_RS07030at 1491.398 kb on - strandat 1491.401 kb on - strand, within HGI48_RS07030at 1491.447 kb on + strand, within HGI48_RS07030at 1491.485 kb on - strand, within HGI48_RS07030at 1491.487 kb on + strand, within HGI48_RS07030at 1491.529 kb on - strand, within HGI48_RS07030at 1491.560 kb on - strand, within HGI48_RS07030at 1491.581 kb on + strand, within HGI48_RS07030at 1491.607 kb on + strand, within HGI48_RS07030at 1491.688 kb on + strandat 1491.695 kb on - strand, within HGI48_RS07030at 1491.716 kb on + strandat 1491.716 kb on + strandat 1491.716 kb on + strandat 1491.716 kb on + strandat 1491.717 kb on - strandat 1491.718 kb on + strandat 1491.760 kb on + strandat 1491.761 kb on - strandat 1491.764 kb on + strandat 1491.764 kb on + strandat 1491.764 kb on + strandat 1491.764 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,488,900 + HGI48_RS07015 0.19 +1.5
1,488,903 + HGI48_RS07015 0.19 -2.0
1,489,069 + HGI48_RS07015 0.34 -2.0
1,489,069 + HGI48_RS07015 0.34 -0.6
1,489,069 + HGI48_RS07015 0.34 -0.4
1,489,069 + HGI48_RS07015 0.34 +1.1
1,489,069 + HGI48_RS07015 0.34 -2.0
1,489,069 + HGI48_RS07015 0.34 -1.1
1,489,070 - HGI48_RS07015 0.34 +0.4
1,489,070 - HGI48_RS07015 0.34 -1.4
1,489,070 - HGI48_RS07015 0.34 +0.8
1,489,070 - HGI48_RS07015 0.34 +0.3
1,489,070 - HGI48_RS07015 0.34 -0.8
1,489,070 - HGI48_RS07015 0.34 -2.4
1,489,070 - HGI48_RS07015 0.34 -0.4
1,489,114 + +0.6
1,489,114 + HGI48_RS07015 0.38 -0.5
1,489,114 + HGI48_RS07015 0.38 -0.7
1,489,114 + HGI48_RS07015 0.38 -2.7
1,489,114 + HGI48_RS07015 0.38 -1.0
1,489,114 + HGI48_RS07015 0.38 -0.4
1,489,114 + HGI48_RS07015 0.38 -2.8
1,489,115 - HGI48_RS07015 0.38 -0.1
1,489,115 - HGI48_RS07015 0.38 -0.4
1,489,115 - -1.0
1,489,115 - HGI48_RS07015 0.38 -0.6
1,489,115 - HGI48_RS07015 0.38 -2.5
1,489,193 + HGI48_RS07015 0.45 +0.1
1,489,213 - HGI48_RS07015 0.47 +0.1
1,489,291 + HGI48_RS07015 0.54 +1.4
1,489,291 + HGI48_RS07015 0.54 -1.4
1,489,292 - HGI48_RS07015 0.54 +0.1
1,489,292 - HGI48_RS07015 0.54 +0.9
1,489,348 + HGI48_RS07015 0.59 -1.5
1,489,348 + HGI48_RS07015 0.59 +0.1
1,489,349 - HGI48_RS07015 0.59 +0.6
1,489,349 - HGI48_RS07015 0.59 -1.4
1,489,349 - HGI48_RS07015 0.59 -1.4
1,489,349 - -0.4
1,489,350 + HGI48_RS07015 0.60 -0.1
1,489,350 + HGI48_RS07015 0.60 +0.4
1,489,350 + +0.6
1,489,350 + HGI48_RS07015 0.60 -1.0
1,489,350 + HGI48_RS07015 0.60 +1.2
1,489,350 + HGI48_RS07015 0.60 -0.0
1,489,351 - HGI48_RS07015 0.60 +1.1
1,489,351 - HGI48_RS07015 0.60 +0.4
1,489,351 - HGI48_RS07015 0.60 +0.5
1,489,351 - HGI48_RS07015 0.60 +0.7
1,489,351 - HGI48_RS07015 0.60 +1.1
1,489,351 - HGI48_RS07015 0.60 -0.5
1,489,351 - HGI48_RS07015 0.60 -1.0
1,489,351 - HGI48_RS07015 0.60 -0.5
1,489,351 - HGI48_RS07015 0.60 +0.6
1,489,351 - HGI48_RS07015 0.60 -2.4
1,489,351 - HGI48_RS07015 0.60 -0.1
1,489,400 - HGI48_RS07015 0.64 -0.8
1,489,401 + HGI48_RS07015 0.64 +0.6
1,489,443 - HGI48_RS07015 0.68 -2.1
1,489,561 + HGI48_RS07015 0.79 -0.8
1,489,588 + HGI48_RS07015 0.81 -0.4
1,489,588 + HGI48_RS07015 0.81 -1.7
1,489,588 + HGI48_RS07015 0.81 -0.6
1,489,589 - +0.6
1,489,589 - HGI48_RS07015 0.81 +0.0
1,489,688 + +0.2
1,489,688 + +0.8
1,489,712 - -0.1
1,489,712 - -0.5
1,489,742 + +1.4
1,489,743 - -0.2
1,489,763 + +0.6
1,489,763 + +0.2
1,489,792 + -0.4
1,489,793 - +0.6
1,489,793 - -2.0
1,489,825 + -1.2
1,489,825 + -0.7
1,489,825 + +0.6
1,489,825 + +0.4
1,489,826 - +0.6
1,489,826 - -2.0
1,489,826 - +0.0
1,489,911 + HGI48_RS07020 0.12 +0.4
1,489,912 - HGI48_RS07020 0.13 -0.1
1,489,931 + HGI48_RS07020 0.14 -2.0
1,489,932 - HGI48_RS07020 0.15 -1.0
1,489,932 - HGI48_RS07020 0.15 -0.2
1,489,934 + HGI48_RS07020 0.15 -1.7
1,489,934 + HGI48_RS07020 0.15 -2.0
1,489,935 - HGI48_RS07020 0.15 +1.4
1,489,935 - HGI48_RS07020 0.15 +1.1
1,489,935 - HGI48_RS07020 0.15 -0.9
1,489,935 - HGI48_RS07020 0.15 +0.1
1,489,982 + HGI48_RS07020 0.19 +0.5
1,489,983 - HGI48_RS07020 0.20 -0.8
1,490,014 - HGI48_RS07020 0.23 -0.3
1,490,050 + +1.4
1,490,050 + HGI48_RS07020 0.26 +0.6
1,490,061 + HGI48_RS07020 0.27 +0.1
1,490,062 - HGI48_RS07020 0.27 -1.1
1,490,153 - HGI48_RS07020 0.36 -0.7
1,490,257 + HGI48_RS07020 0.46 +0.6
1,490,272 + HGI48_RS07020 0.48 -1.0
1,490,465 - HGI48_RS07020 0.67 -0.3
1,490,475 - HGI48_RS07020 0.68 +0.0
1,490,475 - HGI48_RS07020 0.68 -0.0
1,490,477 + HGI48_RS07020 0.68 +1.0
1,490,624 + HGI48_RS07020 0.82 -0.3
1,490,649 - HGI48_RS07020 0.85 +0.0
1,490,661 - HGI48_RS07020 0.86 -1.0
1,490,672 + -1.0
1,490,673 - HGI48_RS07020 0.87 -0.2
1,490,673 - HGI48_RS07020 0.87 +0.1
1,490,732 - +0.1
1,490,768 + +0.3
1,490,795 + -2.4
1,490,801 + +1.6
1,490,801 + +0.1
1,490,836 + HGI48_RS07025 0.24 -1.0
1,490,837 - HGI48_RS07025 0.25 +0.4
1,490,845 + HGI48_RS07025 0.30 -1.4
1,490,846 - HGI48_RS07025 0.30 -1.5
1,490,856 + HGI48_RS07025 0.36 +0.9
1,490,856 + HGI48_RS07025 0.36 +1.2
1,490,879 + HGI48_RS07025 0.50 -1.4
1,490,879 + HGI48_RS07025 0.50 +1.1
1,490,880 - HGI48_RS07025 0.51 +0.7
1,490,880 - HGI48_RS07025 0.51 +0.5
1,490,880 - HGI48_RS07025 0.51 +0.3
1,490,982 - +0.8
1,491,002 + +0.2
1,491,047 + HGI48_RS07030 0.10 +0.9
1,491,049 + HGI48_RS07030 0.10 -0.8
1,491,049 + HGI48_RS07030 0.10 -1.4
1,491,049 + +0.6
1,491,050 - HGI48_RS07030 0.11 -0.4
1,491,050 - HGI48_RS07030 0.11 -1.9
1,491,116 + +2.6
1,491,116 + HGI48_RS07030 0.18 +0.0
1,491,116 + HGI48_RS07030 0.18 -0.8
1,491,116 + HGI48_RS07030 0.18 +1.4
1,491,117 - HGI48_RS07030 0.19 -1.2
1,491,180 + HGI48_RS07030 0.26 -1.1
1,491,180 + HGI48_RS07030 0.26 -0.8
1,491,223 + HGI48_RS07030 0.31 +0.6
1,491,229 - HGI48_RS07030 0.32 -0.0
1,491,231 + HGI48_RS07030 0.32 +0.0
1,491,247 + HGI48_RS07030 0.34 +0.8
1,491,398 - +1.6
1,491,401 - HGI48_RS07030 0.53 +0.6
1,491,447 + HGI48_RS07030 0.58 -0.1
1,491,485 - HGI48_RS07030 0.63 -0.5
1,491,487 + HGI48_RS07030 0.63 +0.6
1,491,529 - HGI48_RS07030 0.68 +1.3
1,491,560 - HGI48_RS07030 0.72 +0.6
1,491,581 + HGI48_RS07030 0.75 +0.4
1,491,607 + HGI48_RS07030 0.78 -2.2
1,491,688 + -1.0
1,491,695 - HGI48_RS07030 0.88 +0.4
1,491,716 + -1.0
1,491,716 + -2.0
1,491,716 + +0.6
1,491,716 + +0.9
1,491,717 - +0.7
1,491,718 + -1.2
1,491,760 + -0.4
1,491,761 - -1.8
1,491,764 + -0.6
1,491,764 + +1.1
1,491,764 + +1.2
1,491,764 + +0.0

Or see this region's nucleotide sequence